Wall clock time and date at job start Mon Mar 30 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 N 1.46898 * 109.47448 * 179.97438 * 3 2 1 5 5 C 1.46849 * 111.00029 * 294.21010 * 4 3 2 6 6 C 1.53037 * 109.52419 * 174.15990 * 5 4 3 7 7 C 1.53114 * 109.27842 * 59.17788 * 6 5 4 8 8 O 1.42902 * 109.52512 * 62.24955 * 7 6 5 9 9 C 1.50700 * 109.52597 * 182.44167 * 7 6 5 10 10 H 1.08000 * 120.00182 * 115.60916 * 9 7 6 11 11 C 1.37874 * 119.99596 * 295.62001 * 9 7 6 12 12 N 1.31518 * 120.00563 * 6.09114 * 11 9 7 13 13 Si 1.86804 * 119.99731 * 186.09532 * 11 9 7 14 14 H 1.48496 * 109.47381 * 84.99095 * 13 11 9 15 15 H 1.48507 * 109.46987 * 204.99087 * 13 11 9 16 16 H 1.48501 * 109.47203 * 324.98980 * 13 11 9 17 17 C 1.53126 * 109.16207 * 302.34311 * 7 6 5 18 18 C 1.46840 * 111.00237 * 169.99592 * 4 3 2 19 19 H 1.08998 * 109.46738 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47196 * 300.00153 * 1 2 3 21 21 H 1.09004 * 109.46656 * 60.00580 * 1 2 3 22 22 H 1.08996 * 109.47909 * 239.99623 * 2 1 3 23 23 H 1.09004 * 109.47099 * 119.99122 * 2 1 3 24 24 H 1.09000 * 109.47114 * 299.99730 * 3 2 1 25 25 H 1.09006 * 109.47458 * 59.99406 * 3 2 1 26 26 H 1.09002 * 109.45823 * 294.17300 * 5 4 3 27 27 H 1.08998 * 109.46264 * 54.14141 * 5 4 3 28 28 H 1.08995 * 109.50159 * 299.23833 * 6 5 4 29 29 H 1.08996 * 109.49919 * 179.11966 * 6 5 4 30 30 H 0.96699 * 113.99881 * 64.53342 * 8 7 6 31 31 H 0.96998 * 120.00404 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.50604 * 297.71502 * 17 7 6 33 33 H 1.09003 * 109.50503 * 177.59467 * 17 7 6 34 34 H 1.09002 * 109.46482 * 305.86134 * 18 4 3 35 35 H 1.09003 * 109.46308 * 65.82250 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0348 0.8806 1.2513 6 6 5.5577 0.7619 1.1583 7 6 6.1584 2.1478 0.9073 8 8 5.8562 3.0059 2.0093 9 6 7.6529 2.0289 0.7551 10 1 8.1212 2.2759 -0.1863 11 6 8.4224 1.6046 1.8175 12 7 7.8447 1.1897 2.9237 13 14 10.2858 1.6192 1.6857 14 1 10.7965 2.9682 2.0384 15 1 10.8559 0.6145 2.6190 16 1 10.6863 1.2863 0.2950 17 6 5.5582 2.7310 -0.3750 18 6 4.0353 2.7926 -0.2375 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.8935 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9565 0.8900 26 1 3.7716 1.5350 2.0823 27 1 3.6029 -0.1065 1.4157 28 1 5.8212 0.0968 0.3360 29 1 5.9490 0.3594 2.0925 30 1 6.2603 2.7316 2.8438 31 1 8.3862 0.8915 3.6713 32 1 5.8218 2.0968 -1.2214 33 1 5.9500 3.7354 -0.5362 34 1 3.6038 3.1942 -1.1544 35 1 3.7721 3.4381 0.6005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:14 Heat of formation + Delta-G solvation = -65.279546 kcal Electronic energy + Delta-G solvation = -15178.566628 eV Core-core repulsion = 12789.704307 eV Total energy + Delta-G solvation = -2388.862321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -38.52713 -35.76253 -33.18704 -31.98728 -30.15447 -29.74225 -26.43504 -24.41357 -22.37732 -21.65397 -20.29923 -18.45298 -16.89349 -15.38461 -15.13038 -14.82029 -14.22085 -13.85864 -13.65420 -13.08990 -12.82634 -12.59948 -12.13995 -11.77824 -11.60012 -11.21569 -11.02218 -10.94533 -10.85196 -10.48275 -10.38113 -10.29052 -10.14714 -9.85768 -9.68662 -8.90831 -8.55386 -7.96637 -7.56721 -6.11571 -4.21745 3.26673 3.33094 3.36373 4.35715 4.51949 5.11948 5.14586 5.25612 5.49278 5.69279 5.78592 5.84869 5.94689 6.05680 6.09510 6.18739 6.31172 6.33761 6.37910 6.41958 6.49282 6.68132 6.76186 6.90167 7.10268 7.34301 7.56801 7.68930 7.82701 7.89564 8.09327 8.25324 8.80538 9.47025 9.61286 10.90832 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.059375 B = 0.007721 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.464944 B = 3625.699883 C = 3786.357994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.539 5.539 5 C 0.059 3.941 6 C -0.128 4.128 7 C 0.249 3.751 8 O -0.595 6.595 9 C -0.533 4.533 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.901 5.901 13 Si 0.898 3.102 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.094 4.094 18 C 0.063 3.937 19 H 0.052 0.948 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.028 0.972 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.379 0.621 31 H 0.266 0.734 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 -1.206 -3.341 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.263 5.263 5 C -0.069 4.069 6 C -0.167 4.167 7 C 0.210 3.790 8 O -0.404 6.404 9 C -0.571 4.571 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.542 5.542 13 Si 0.726 3.274 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.131 4.131 18 C -0.065 4.065 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.229 0.771 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.367 -1.251 -4.012 10.267 hybrid contribution 1.092 0.144 1.082 1.544 sum -8.275 -1.107 -2.930 8.848 Atomic orbital electron populations 1.21738 0.96235 1.01274 1.01444 1.21546 0.94657 0.97086 1.02677 1.22079 0.88987 0.96434 0.99817 1.62024 1.05532 1.22477 1.36316 1.22192 0.98174 0.97518 0.88990 1.22204 0.90584 1.00647 1.03256 1.18605 0.91892 0.85471 0.83031 1.86075 1.76675 1.55896 1.21747 1.21795 0.92583 1.44312 0.98444 0.92285 1.25003 0.99103 0.93757 0.95413 1.69611 1.35584 1.44079 1.04898 0.86519 0.85127 0.77806 0.77981 1.20503 1.21226 1.19924 1.21530 0.92310 1.00526 0.98776 1.22008 0.96958 0.88588 0.98926 0.92891 0.93067 0.92955 0.91365 0.91904 0.91714 0.95709 0.95337 0.92668 0.93220 0.88984 0.77089 0.92411 0.91684 0.92552 0.92772 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.65 5.86 -26.73 -0.16 -1.81 16 3 C 0.06 0.86 4.96 -3.82 -0.02 0.84 16 4 N -0.54 -10.25 4.66 -234.67 -1.09 -11.34 16 5 C 0.06 1.21 5.16 -3.83 -0.02 1.19 16 6 C -0.13 -3.07 4.89 -26.65 -0.13 -3.20 16 7 C 0.25 6.30 0.67 -91.65 -0.06 6.24 16 8 O -0.59 -15.68 11.83 -35.23 -0.42 -16.10 16 9 C -0.53 -14.57 8.22 -34.44 -0.28 -14.85 16 10 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 11 C 0.07 1.82 5.19 -17.82 -0.09 1.73 16 12 N -0.90 -24.26 9.76 55.43 0.54 -23.72 16 13 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 17 C -0.09 -2.09 5.05 -26.65 -0.13 -2.22 16 18 C 0.06 1.24 5.32 -3.84 -0.02 1.22 16 19 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.90 6.43 -51.93 -0.33 0.56 16 24 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 25 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 26 H 0.03 0.63 7.76 -51.93 -0.40 0.22 16 27 H 0.05 1.05 6.21 -51.93 -0.32 0.72 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 2.39 6.27 -51.93 -0.33 2.06 16 30 H 0.38 10.25 6.98 45.56 0.32 10.57 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 35 H 0.03 0.71 7.76 -51.93 -0.40 0.30 16 LS Contribution 270.95 15.07 4.08 4.08 Total: -1.00 -27.27 270.95 -7.68 -34.95 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.22 Total: 8.31 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.55 Total: -12.12 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.55 Total: -35.07 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.42 Total: -16.10 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.27 -7.68 -34.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.327 kcal (2) G-P(sol) polarization free energy of solvation -27.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds