Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 N 1.46898 * 109.47448 * 179.97438 * 3 2 1 5 5 C 1.46849 * 111.00029 * 294.21010 * 4 3 2 6 6 C 1.53037 * 109.52419 * 174.15990 * 5 4 3 7 7 C 1.53114 * 109.27842 * 59.17788 * 6 5 4 8 8 O 1.42902 * 109.52512 * 62.24955 * 7 6 5 9 9 C 1.50700 * 109.52597 * 182.44167 * 7 6 5 10 10 H 1.08000 * 120.00182 * 115.60916 * 9 7 6 11 11 C 1.37874 * 119.99596 * 295.62001 * 9 7 6 12 12 N 1.31518 * 120.00563 * 6.09114 * 11 9 7 13 13 Si 1.86804 * 119.99731 * 186.09532 * 11 9 7 14 14 H 1.48496 * 109.47381 * 84.99095 * 13 11 9 15 15 H 1.48507 * 109.46987 * 204.99087 * 13 11 9 16 16 H 1.48501 * 109.47203 * 324.98980 * 13 11 9 17 17 C 1.53126 * 109.16207 * 302.34311 * 7 6 5 18 18 C 1.46840 * 111.00237 * 169.99592 * 4 3 2 19 19 H 1.08998 * 109.46738 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47196 * 300.00153 * 1 2 3 21 21 H 1.09004 * 109.46656 * 60.00580 * 1 2 3 22 22 H 1.08996 * 109.47909 * 239.99623 * 2 1 3 23 23 H 1.09004 * 109.47099 * 119.99122 * 2 1 3 24 24 H 1.09000 * 109.47114 * 299.99730 * 3 2 1 25 25 H 1.09006 * 109.47458 * 59.99406 * 3 2 1 26 26 H 1.09002 * 109.45823 * 294.17300 * 5 4 3 27 27 H 1.08998 * 109.46264 * 54.14141 * 5 4 3 28 28 H 1.08995 * 109.50159 * 299.23833 * 6 5 4 29 29 H 1.08996 * 109.49919 * 179.11966 * 6 5 4 30 30 H 0.96699 * 113.99881 * 64.53342 * 8 7 6 31 31 H 0.96998 * 120.00404 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.50604 * 297.71502 * 17 7 6 33 33 H 1.09003 * 109.50503 * 177.59467 * 17 7 6 34 34 H 1.09002 * 109.46482 * 305.86134 * 18 4 3 35 35 H 1.09003 * 109.46308 * 65.82250 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0348 0.8806 1.2513 6 6 5.5577 0.7619 1.1583 7 6 6.1584 2.1478 0.9073 8 8 5.8562 3.0059 2.0093 9 6 7.6529 2.0289 0.7551 10 1 8.1212 2.2759 -0.1863 11 6 8.4224 1.6046 1.8175 12 7 7.8447 1.1897 2.9237 13 14 10.2858 1.6192 1.6857 14 1 10.7965 2.9682 2.0384 15 1 10.8559 0.6145 2.6190 16 1 10.6863 1.2863 0.2950 17 6 5.5582 2.7310 -0.3750 18 6 4.0353 2.7926 -0.2375 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.8935 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9565 0.8900 26 1 3.7716 1.5350 2.0823 27 1 3.6029 -0.1065 1.4157 28 1 5.8212 0.0968 0.3360 29 1 5.9490 0.3594 2.0925 30 1 6.2603 2.7316 2.8438 31 1 8.3862 0.8915 3.6713 32 1 5.8218 2.0968 -1.2214 33 1 5.9500 3.7354 -0.5362 34 1 3.6038 3.1942 -1.1544 35 1 3.7721 3.4381 0.6005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = -83.750244 kcal Electronic energy + Delta-G solvation = -15179.367578 eV Core-core repulsion = 12789.704307 eV Total energy + Delta-G solvation = -2389.663271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22768 -37.45248 -34.58515 -34.05269 -31.79874 -31.51179 -28.14726 -25.92813 -24.04852 -23.28435 -21.60287 -20.30447 -18.92779 -17.04443 -16.94929 -16.23363 -15.96690 -15.36972 -15.18473 -14.96053 -14.55693 -13.86769 -13.66120 -13.45160 -13.11113 -12.86054 -12.62410 -12.53909 -12.38445 -12.18597 -12.09545 -11.95002 -11.74151 -11.59356 -11.32838 -10.79290 -10.59886 -9.94545 -9.14785 -8.15275 -6.33965 1.40650 1.42507 1.51287 2.39936 3.02487 3.08877 3.99076 4.10530 4.17970 4.26931 4.36343 4.52438 4.54056 4.58943 4.72045 4.73582 4.82266 4.83664 4.95705 5.02758 5.10713 5.22209 5.27380 5.35097 5.45782 5.47112 5.57009 5.78244 5.98724 6.18885 6.28868 6.36896 6.71766 7.37634 7.48950 8.84744 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.059375 B = 0.007721 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.464944 B = 3625.699883 C = 3786.357994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.054 3.946 4 N -0.543 5.543 5 C 0.070 3.930 6 C -0.120 4.120 7 C 0.236 3.764 8 O -0.599 6.599 9 C -0.563 4.563 10 H 0.051 0.949 11 C 0.028 3.972 12 N -0.914 5.914 13 Si 0.958 3.042 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.272 1.272 17 C -0.092 4.092 18 C 0.069 3.931 19 H 0.064 0.936 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.023 0.977 26 H 0.013 0.987 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.372 0.628 31 H 0.268 0.732 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 -1.407 -4.115 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.074 4.074 4 N -0.268 5.268 5 C -0.058 4.058 6 C -0.158 4.158 7 C 0.197 3.803 8 O -0.408 6.408 9 C -0.601 4.601 10 H 0.069 0.931 11 C -0.172 4.172 12 N -0.555 5.555 13 Si 0.784 3.216 14 H -0.203 1.203 15 H -0.206 1.206 16 H -0.197 1.197 17 C -0.130 4.130 18 C -0.058 4.058 19 H 0.084 0.916 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.221 0.779 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.286 -1.452 -4.795 11.441 hybrid contribution 1.365 0.204 1.320 1.909 sum -8.922 -1.248 -3.475 9.655 Atomic orbital electron populations 1.21691 0.93919 1.02373 1.02121 1.21521 0.96627 0.95440 1.02048 1.22223 0.86413 0.98102 1.00619 1.62018 1.07915 1.21886 1.34946 1.21982 0.95975 0.98357 0.89437 1.21993 0.92963 0.99528 1.01353 1.18836 0.91513 0.86218 0.83729 1.86072 1.76589 1.56396 1.21752 1.22076 0.94113 1.45362 0.98543 0.93090 1.25685 1.03074 0.93258 0.95135 1.69707 1.36844 1.43755 1.05169 0.85580 0.80247 0.77811 0.77979 1.20273 1.20553 1.19717 1.21482 0.94334 1.00042 0.97171 1.21938 0.95171 0.88913 0.99826 0.91647 0.92832 0.91843 0.91569 0.92960 0.89814 0.95874 0.96907 0.90877 0.94266 0.91469 0.77893 0.92200 0.91587 0.92905 0.89626 0.96328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.93 5.86 30.59 0.18 -2.75 16 3 C 0.05 1.55 4.96 86.30 0.43 1.97 16 4 N -0.54 -19.80 4.66 -896.35 -4.17 -23.98 16 5 C 0.07 2.87 5.16 86.33 0.45 3.32 16 6 C -0.12 -5.80 4.89 30.64 0.15 -5.65 16 7 C 0.24 12.07 0.67 -11.46 -0.01 12.06 16 8 O -0.60 -32.16 11.83 -148.98 -1.76 -33.92 16 9 C -0.56 -31.15 8.22 25.60 0.21 -30.94 16 10 H 0.05 2.82 7.75 -2.91 -0.02 2.80 16 11 C 0.03 1.50 5.19 84.65 0.44 1.94 16 12 N -0.91 -49.74 9.76 21.45 0.21 -49.53 16 13 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 C -0.09 -4.10 5.05 30.65 0.15 -3.94 16 18 C 0.07 2.63 5.32 86.33 0.46 3.09 16 19 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 20 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.05 1.39 6.43 -2.38 -0.02 1.38 16 24 H 0.08 2.11 7.99 -2.39 -0.02 2.09 16 25 H 0.02 0.68 8.12 -2.38 -0.02 0.66 16 26 H 0.01 0.56 7.76 -2.39 -0.02 0.54 16 27 H 0.07 2.71 6.21 -2.39 -0.01 2.69 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 3.57 6.27 -2.39 -0.01 3.55 16 30 H 0.37 20.64 6.98 -74.06 -0.52 20.12 16 31 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.09 2.72 8.02 -2.39 -0.02 2.70 16 35 H 0.02 0.76 7.76 -2.39 -0.02 0.74 16 Total: -1.00 -57.53 270.95 0.01 -57.52 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.54 Total: 27.71 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 3.17 Total: -22.85 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -3.96 Total: -73.51 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.76 Total: -33.92 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -57.53 0.01 -57.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.227 kcal (2) G-P(sol) polarization free energy of solvation -57.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds