Wall clock time and date at job start Mon Mar 30 2020 02:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47032 * 2 1 4 4 N 1.46898 * 109.47306 * 119.99992 * 2 1 3 5 5 C 1.46846 * 111.00056 * 175.00021 * 4 2 1 6 6 C 1.53035 * 109.52744 * 185.84176 * 5 4 2 7 7 C 1.53124 * 109.27475 * 300.82106 * 6 5 4 8 8 O 1.42906 * 109.52186 * 297.74849 * 7 6 5 9 9 C 1.50702 * 109.52429 * 177.55754 * 7 6 5 10 10 H 1.07995 * 119.99724 * 240.31702 * 9 7 6 11 11 C 1.37877 * 119.99892 * 60.31386 * 9 7 6 12 12 N 1.31514 * 119.99907 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 120.00131 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46713 * 59.99862 * 13 11 9 15 15 H 1.48499 * 109.47226 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46905 * 300.00279 * 13 11 9 17 17 C 1.53123 * 109.16220 * 57.64849 * 7 6 5 18 18 C 1.46846 * 110.99964 * 299.20989 * 4 2 1 19 19 H 1.09006 * 109.46538 * 300.00153 * 1 2 3 20 20 H 1.09001 * 109.47214 * 59.99499 * 1 2 3 21 21 H 1.08996 * 109.46979 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47220 * 240.00049 * 2 1 3 23 23 H 1.09002 * 109.47063 * 300.00059 * 3 2 1 24 24 H 1.08998 * 109.47284 * 60.00428 * 3 2 1 25 25 H 1.09002 * 109.47213 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.46456 * 305.85644 * 5 4 2 27 27 H 1.09003 * 109.46474 * 65.82149 * 5 4 2 28 28 H 1.08993 * 109.50220 * 60.75645 * 6 5 4 29 29 H 1.08992 * 109.50519 * 180.88040 * 6 5 4 30 30 H 0.96698 * 113.99471 * 299.68249 * 8 7 6 31 31 H 0.97003 * 119.99721 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.50279 * 182.40035 * 17 7 6 33 33 H 1.09000 * 109.49827 * 62.29028 * 17 7 6 34 34 H 1.09009 * 109.46169 * 294.17270 * 18 4 2 35 35 H 1.08995 * 109.46611 * 54.14126 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4827 -0.8164 1.1751 6 6 3.9439 -1.6664 2.3612 7 6 3.4907 -1.0031 3.6648 8 8 4.1054 0.2813 3.7859 9 6 3.8897 -1.8660 4.8341 10 1 3.1338 -2.2606 5.4968 11 6 5.2199 -2.1518 5.0578 12 7 6.1405 -1.6709 4.2510 13 14 5.7145 -3.2220 6.5068 14 1 5.0777 -4.5572 6.3760 15 1 7.1911 -3.3781 6.5256 16 1 5.2676 -2.5820 7.7701 17 6 1.9682 -0.8417 3.6439 18 6 1.5644 -0.0158 2.4205 19 1 -0.3632 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 3.1300 1.4426 -0.0005 26 1 3.7914 -1.2933 0.2447 27 1 3.9323 0.1744 1.2416 28 1 3.5056 -2.6616 2.2878 29 1 5.0309 -1.7451 2.3516 30 1 5.0718 0.2545 3.8055 31 1 7.0763 -1.8723 4.4082 32 1 1.6438 -0.3315 4.5508 33 1 1.4989 -1.8241 3.5907 34 1 2.0230 0.9713 2.4813 35 1 0.4797 0.0889 2.3949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:28 Heat of formation + Delta-G solvation = -58.399228 kcal Electronic energy + Delta-G solvation = -15500.954777 eV Core-core repulsion = 13112.390809 eV Total energy + Delta-G solvation = -2388.563968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.87108 -35.98870 -32.39120 -31.98424 -30.07181 -28.75729 -26.94133 -25.53408 -22.66277 -21.77669 -19.71826 -18.15018 -16.89091 -15.46082 -14.96147 -14.58483 -14.18570 -13.87649 -13.52401 -12.99747 -12.80530 -12.67259 -11.81541 -11.79738 -11.51278 -11.29169 -11.11033 -10.93859 -10.74729 -10.58985 -10.48649 -10.16854 -10.08892 -9.93014 -9.65300 -8.87611 -8.50128 -7.97632 -7.50506 -6.10181 -4.20378 3.28197 3.32565 3.36030 4.36499 4.54823 5.14287 5.17615 5.38441 5.57486 5.73754 5.80112 5.89669 6.04154 6.11773 6.16356 6.17700 6.31276 6.32279 6.39918 6.51887 6.57222 6.66153 6.78387 6.93227 7.11820 7.33965 7.59325 7.69628 7.84710 7.91124 8.10266 8.28431 8.81914 9.47658 9.63017 10.92580 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060803 B = 0.008627 C = 0.008340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.393087 B = 3244.894672 C = 3356.325800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.185 4.185 4 N -0.531 5.531 5 C 0.059 3.941 6 C -0.130 4.130 7 C 0.251 3.749 8 O -0.594 6.594 9 C -0.533 4.533 10 H 0.058 0.942 11 C 0.068 3.932 12 N -0.901 5.901 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.094 4.094 18 C 0.058 3.942 19 H 0.055 0.945 20 H 0.051 0.949 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.378 0.622 31 H 0.266 0.734 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 2.800 -6.731 9.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.243 4.243 4 N -0.255 5.255 5 C -0.068 4.068 6 C -0.169 4.169 7 C 0.211 3.789 8 O -0.403 6.403 9 C -0.571 4.571 10 H 0.076 0.924 11 C -0.132 4.132 12 N -0.542 5.542 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.132 4.132 18 C -0.070 4.070 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.227 0.773 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.716 2.511 -6.747 9.845 hybrid contribution 1.318 -0.018 0.743 1.513 sum -5.398 2.493 -6.004 8.450 Atomic orbital electron populations 1.21858 0.95073 1.02026 1.01065 1.21664 0.95218 0.92314 0.94348 1.22462 1.01793 0.98508 1.01579 1.62258 1.12051 1.50047 1.01158 1.22148 0.86092 0.99347 0.99241 1.22214 1.03195 0.97591 0.93898 1.18605 0.87588 0.81189 0.91494 1.86090 1.25456 1.31932 1.96821 1.21769 0.92499 1.30828 1.11980 0.92424 1.24995 0.96494 0.95432 0.96319 1.69587 1.01081 1.46109 1.37423 0.86565 0.77219 0.80826 0.82824 1.20216 1.21228 1.20220 1.21526 0.97420 0.99042 0.95196 1.22089 0.98197 0.96528 0.90186 0.92588 0.93012 0.92114 0.90839 0.93031 0.92337 0.92438 0.93126 0.94894 0.93244 0.88859 0.77253 0.92411 0.92700 0.91775 0.94422 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.99 37.16 0.33 -1.53 16 2 C 0.07 1.12 2.96 -67.71 -0.20 0.92 16 3 C -0.18 -2.68 8.50 37.16 0.32 -2.37 16 4 N -0.53 -9.91 4.64 -226.69 -1.05 -10.96 16 5 C 0.06 1.21 4.89 -3.84 -0.02 1.19 16 6 C -0.13 -3.11 4.83 -26.65 -0.13 -3.24 16 7 C 0.25 6.30 0.67 -91.64 -0.06 6.24 16 8 O -0.59 -15.55 11.82 -35.23 -0.42 -15.97 16 9 C -0.53 -14.59 8.25 -34.44 -0.28 -14.87 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 11 C 0.07 1.84 5.22 -17.82 -0.09 1.74 16 12 N -0.90 -24.26 9.73 55.43 0.54 -23.72 16 13 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.09 -2.09 5.05 -26.65 -0.13 -2.23 16 18 C 0.06 1.12 4.50 -3.84 -0.02 1.10 16 19 H 0.06 0.74 6.30 -51.93 -0.33 0.41 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.89 6.52 -51.93 -0.34 0.55 16 25 H 0.06 0.90 6.65 -51.93 -0.35 0.55 16 26 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 27 H 0.03 0.70 6.35 -51.93 -0.33 0.37 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 30 H 0.38 10.14 7.14 45.56 0.33 10.46 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.04 0.78 6.24 -51.92 -0.32 0.45 16 35 H 0.06 0.99 6.03 -51.93 -0.31 0.68 16 LS Contribution 263.37 15.07 3.97 3.97 Total: -1.00 -27.15 263.37 -7.16 -34.31 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.89 Total: 9.41 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.29 Total: -13.04 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.51 Total: -34.68 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.42 Total: -15.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.15 -7.16 -34.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.091 kcal (2) G-P(sol) polarization free energy of solvation -27.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds