Wall clock time and date at job start Mon Mar 30 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47032 * 2 1 4 4 N 1.46898 * 109.47306 * 119.99992 * 2 1 3 5 5 C 1.46846 * 111.00056 * 175.00021 * 4 2 1 6 6 C 1.53035 * 109.52744 * 185.84176 * 5 4 2 7 7 C 1.53124 * 109.27475 * 300.82106 * 6 5 4 8 8 O 1.42906 * 109.52186 * 297.74849 * 7 6 5 9 9 C 1.50702 * 109.52429 * 177.55754 * 7 6 5 10 10 H 1.07995 * 119.99724 * 240.31702 * 9 7 6 11 11 C 1.37877 * 119.99892 * 60.31386 * 9 7 6 12 12 N 1.31514 * 119.99907 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 120.00131 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46713 * 59.99862 * 13 11 9 15 15 H 1.48499 * 109.47226 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46905 * 300.00279 * 13 11 9 17 17 C 1.53123 * 109.16220 * 57.64849 * 7 6 5 18 18 C 1.46846 * 110.99964 * 299.20989 * 4 2 1 19 19 H 1.09006 * 109.46538 * 300.00153 * 1 2 3 20 20 H 1.09001 * 109.47214 * 59.99499 * 1 2 3 21 21 H 1.08996 * 109.46979 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47220 * 240.00049 * 2 1 3 23 23 H 1.09002 * 109.47063 * 300.00059 * 3 2 1 24 24 H 1.08998 * 109.47284 * 60.00428 * 3 2 1 25 25 H 1.09002 * 109.47213 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.46456 * 305.85644 * 5 4 2 27 27 H 1.09003 * 109.46474 * 65.82149 * 5 4 2 28 28 H 1.08993 * 109.50220 * 60.75645 * 6 5 4 29 29 H 1.08992 * 109.50519 * 180.88040 * 6 5 4 30 30 H 0.96698 * 113.99471 * 299.68249 * 8 7 6 31 31 H 0.97003 * 119.99721 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.50279 * 182.40035 * 17 7 6 33 33 H 1.09000 * 109.49827 * 62.29028 * 17 7 6 34 34 H 1.09009 * 109.46169 * 294.17270 * 18 4 2 35 35 H 1.08995 * 109.46611 * 54.14126 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4827 -0.8164 1.1751 6 6 3.9439 -1.6664 2.3612 7 6 3.4907 -1.0031 3.6648 8 8 4.1054 0.2813 3.7859 9 6 3.8897 -1.8660 4.8341 10 1 3.1338 -2.2606 5.4968 11 6 5.2199 -2.1518 5.0578 12 7 6.1405 -1.6709 4.2510 13 14 5.7145 -3.2220 6.5068 14 1 5.0777 -4.5572 6.3760 15 1 7.1911 -3.3781 6.5256 16 1 5.2676 -2.5820 7.7701 17 6 1.9682 -0.8417 3.6439 18 6 1.5644 -0.0158 2.4205 19 1 -0.3632 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 3.1300 1.4426 -0.0005 26 1 3.7914 -1.2933 0.2447 27 1 3.9323 0.1744 1.2416 28 1 3.5056 -2.6616 2.2878 29 1 5.0309 -1.7451 2.3516 30 1 5.0718 0.2545 3.8055 31 1 7.0763 -1.8723 4.4082 32 1 1.6438 -0.3315 4.5508 33 1 1.4989 -1.8241 3.5907 34 1 2.0230 0.9713 2.4813 35 1 0.4797 0.0889 2.3949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:19 Heat of formation + Delta-G solvation = -77.209056 kcal Electronic energy + Delta-G solvation = -15501.770432 eV Core-core repulsion = 13112.390809 eV Total energy + Delta-G solvation = -2389.379624 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.48242 -37.72751 -34.17202 -33.90762 -31.76559 -30.46391 -28.04843 -27.43768 -24.33129 -23.51342 -21.23890 -19.85049 -18.91039 -17.00671 -16.90831 -16.25722 -15.72654 -15.48674 -15.15299 -14.71030 -14.38640 -14.14579 -13.46088 -13.20442 -13.15299 -12.92201 -12.76493 -12.57099 -12.37582 -12.25479 -12.00338 -11.91536 -11.81818 -11.63777 -11.39317 -10.72970 -10.54078 -9.95995 -9.04248 -8.14283 -6.33119 1.41260 1.41616 1.49615 2.40043 3.04382 3.12743 3.99134 4.10146 4.23965 4.24720 4.38357 4.50885 4.58291 4.62401 4.72195 4.77788 4.84353 4.92726 4.99073 5.01585 5.07386 5.15748 5.26422 5.39252 5.42670 5.51662 5.58295 5.79220 6.01318 6.22313 6.33892 6.43398 6.72726 7.37837 7.51620 8.85659 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060803 B = 0.008627 C = 0.008340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.393087 B = 3244.894672 C = 3356.325800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.069 3.931 3 C -0.179 4.179 4 N -0.536 5.536 5 C 0.070 3.930 6 C -0.122 4.122 7 C 0.239 3.761 8 O -0.598 6.598 9 C -0.564 4.564 10 H 0.049 0.951 11 C 0.028 3.972 12 N -0.913 5.913 13 Si 0.957 3.043 14 H -0.273 1.273 15 H -0.279 1.279 16 H -0.276 1.276 17 C -0.093 4.093 18 C 0.068 3.932 19 H 0.053 0.947 20 H 0.078 0.922 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.021 0.979 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.371 0.629 31 H 0.268 0.732 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.024 0.976 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 2.854 -7.601 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 C -0.238 4.238 4 N -0.260 5.260 5 C -0.058 4.058 6 C -0.160 4.160 7 C 0.200 3.800 8 O -0.407 6.407 9 C -0.602 4.602 10 H 0.067 0.933 11 C -0.171 4.171 12 N -0.553 5.553 13 Si 0.782 3.218 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.131 4.131 18 C -0.060 4.060 19 H 0.072 0.928 20 H 0.097 0.903 21 H 0.078 0.922 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.220 0.780 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.698 2.572 -7.631 11.141 hybrid contribution 1.619 -0.029 0.995 1.901 sum -6.079 2.543 -6.636 9.352 Atomic orbital electron populations 1.21824 0.92976 1.02365 1.02285 1.21848 0.96850 0.92411 0.92818 1.22400 1.00700 0.98208 1.02474 1.62230 1.10551 1.50995 1.02259 1.21939 0.87538 0.98047 0.98271 1.22001 1.01527 0.97477 0.95034 1.18813 0.89246 0.80521 0.91467 1.86086 1.24905 1.32766 1.96906 1.22071 0.92938 1.32072 1.13121 0.93313 1.25671 0.96419 0.96446 0.98576 1.69684 1.01214 1.46267 1.38169 0.85644 0.77096 0.79231 0.79795 1.19868 1.20456 1.20169 1.21483 0.95420 0.99562 0.96661 1.21964 0.99642 0.95020 0.89357 0.92838 0.90345 0.92213 0.89848 0.90234 0.93304 0.94066 0.91455 0.96044 0.94458 0.91300 0.78038 0.92241 0.93260 0.91831 0.95779 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.99 71.98 0.65 -2.44 16 2 C 0.07 1.91 2.96 44.92 0.13 2.04 16 3 C -0.18 -4.78 8.50 71.98 0.61 -4.17 16 4 N -0.54 -19.15 4.64 -871.11 -4.04 -23.19 16 5 C 0.07 2.81 4.89 86.33 0.42 3.24 16 6 C -0.12 -5.87 4.83 30.65 0.15 -5.72 16 7 C 0.24 12.17 0.67 -11.46 -0.01 12.16 16 8 O -0.60 -31.93 11.82 -148.98 -1.76 -33.69 16 9 C -0.56 -31.38 8.25 25.60 0.21 -31.17 16 10 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 11 C 0.03 1.54 5.22 84.65 0.44 1.98 16 12 N -0.91 -49.67 9.73 21.45 0.21 -49.46 16 13 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 C -0.09 -4.15 5.05 30.65 0.15 -4.00 16 18 C 0.07 2.54 4.50 86.32 0.39 2.93 16 19 H 0.05 1.23 6.30 -2.38 -0.02 1.22 16 20 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 23 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.39 6.52 -2.39 -0.02 1.38 16 25 H 0.04 1.22 6.65 -2.39 -0.02 1.21 16 26 H 0.07 2.46 8.08 -2.38 -0.02 2.44 16 27 H 0.02 0.91 6.35 -2.39 -0.02 0.90 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 3.63 6.17 -2.39 -0.01 3.62 16 30 H 0.37 20.45 7.14 -74.06 -0.53 19.92 16 31 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.02 0.97 6.24 -2.38 -0.01 0.96 16 35 H 0.09 2.73 6.03 -2.39 -0.01 2.72 16 Total: -1.00 -57.53 263.37 0.12 -57.42 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.54 Total: 28.85 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.15 Total: -25.15 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -3.84 Total: -72.65 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.76 Total: -33.69 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -57.53 0.12 -57.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.793 kcal (2) G-P(sol) polarization free energy of solvation -57.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds