Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47448 * 2 1 4 4 N 1.46509 * 109.46802 * 120.00042 * 2 1 3 5 5 C 1.36933 * 119.99910 * 113.94555 * 4 2 1 6 6 H 1.08005 * 120.00107 * 155.07587 * 5 4 2 7 7 C 1.38810 * 120.00358 * 335.07602 * 5 4 2 8 8 N 1.31615 * 120.00442 * 141.86660 * 7 5 4 9 9 Si 1.86805 * 119.99725 * 321.86989 * 7 5 4 10 10 H 1.48500 * 109.46912 * 86.72136 * 9 7 5 11 11 H 1.48506 * 109.47225 * 326.72230 * 9 7 5 12 12 H 1.48504 * 109.47269 * 206.72041 * 9 7 5 13 13 C 1.46500 * 120.00049 * 293.94193 * 4 2 1 14 14 H 1.09009 * 109.52220 * 0.02562 * 13 4 2 15 15 C 1.53178 * 109.52435 * 239.87681 * 13 4 2 16 16 C 1.53179 * 109.03270 * 183.17378 * 15 13 4 17 17 C 1.53096 * 109.21459 * 56.88759 * 16 15 13 18 18 O 1.42908 * 109.41289 * 302.42682 * 17 16 15 19 19 C 1.42904 * 114.10221 * 61.15379 * 18 17 16 20 20 H 1.09003 * 109.46764 * 300.00152 * 1 2 3 21 21 H 1.08999 * 109.47149 * 59.99813 * 1 2 3 22 22 H 1.09002 * 109.47547 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47027 * 239.99567 * 2 1 3 24 24 H 1.08999 * 109.47444 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47098 * 300.00218 * 3 2 1 26 26 H 1.09003 * 109.46770 * 59.99964 * 3 2 1 27 27 H 0.97004 * 120.00249 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.54432 * 302.98426 * 15 13 4 29 29 H 1.09000 * 109.54047 * 63.24451 * 15 13 4 30 30 H 1.09006 * 109.47348 * 296.98563 * 16 15 13 31 31 H 1.09001 * 109.52779 * 176.82503 * 16 15 13 32 32 H 1.08996 * 109.48458 * 182.44352 * 17 16 15 33 33 H 1.08996 * 109.48030 * 62.40115 * 17 16 15 34 34 H 1.08997 * 109.48032 * 178.86199 * 19 18 17 35 35 H 1.09003 * 109.48623 * 58.82612 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1963 5 6 2.7002 -1.8718 1.0744 6 1 3.3914 -2.1784 1.8457 7 6 2.5034 -2.6752 -0.0403 8 7 3.5201 -3.3142 -0.5789 9 14 0.7952 -2.8494 -0.7760 10 1 0.5605 -1.7513 -1.7478 11 1 -0.2195 -2.7782 0.3060 12 1 0.6865 -4.1572 -1.4711 13 6 1.7770 -0.1176 2.5227 14 1 1.2235 0.8160 2.4210 15 6 3.1164 0.1537 3.2146 16 6 2.8509 0.6777 4.6292 17 6 1.9973 -0.3393 5.3914 18 8 0.7804 -0.5677 4.6778 19 6 0.9648 -1.1039 3.3661 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.3824 -3.8760 -1.3576 28 1 3.6914 -0.7706 3.2710 29 1 3.6753 0.8983 2.6478 30 1 2.3199 1.6280 4.5710 31 1 3.7984 0.8202 5.1489 32 1 1.7692 0.0487 6.3841 33 1 2.5454 -1.2768 5.4844 34 1 -0.0069 -1.2667 2.9000 35 1 1.4995 -2.0515 3.4325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230073894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = -25.727540 kcal Electronic energy + Delta-G solvation = -15659.505492 eV Core-core repulsion = 13272.358274 eV Total energy + Delta-G solvation = -2387.147218 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.95674 -36.55669 -32.85149 -32.17365 -31.01758 -28.35795 -26.63415 -24.40543 -23.97466 -22.19213 -19.99719 -19.33768 -16.68089 -15.63547 -15.47840 -15.11544 -14.62774 -14.02925 -13.67276 -13.27505 -13.25336 -12.57161 -12.29051 -12.06911 -11.81199 -11.67543 -11.17182 -11.15766 -10.86208 -10.62332 -10.35437 -10.28742 -10.02118 -9.86212 -9.52501 -9.37059 -8.90502 -8.37826 -7.01948 -6.06702 -3.22141 3.37631 3.53277 3.54168 4.30862 4.55946 4.89029 5.22296 5.32255 5.45337 5.48687 5.71420 5.74977 5.79063 5.97891 6.01322 6.10846 6.20517 6.20943 6.23556 6.32935 6.41712 6.46077 6.52117 6.58703 6.65430 6.88598 7.00335 7.04480 7.06594 7.68072 7.98089 8.30406 8.97800 9.74437 10.12450 11.07699 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.012439 C = 0.011593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.494827 B = 2250.458612 C = 2414.709880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.157 3.843 3 C -0.156 4.156 4 N -0.587 5.587 5 C -0.272 4.272 6 H 0.083 0.917 7 C 0.040 3.960 8 N -0.877 5.877 9 Si 0.850 3.150 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.307 1.307 13 C 0.148 3.852 14 H 0.061 0.939 15 C -0.128 4.128 16 C -0.153 4.153 17 C 0.063 3.937 18 O -0.395 6.395 19 C 0.050 3.950 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.262 0.738 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 7.645 6.222 10.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.050 3.950 3 C -0.215 4.215 4 N -0.309 5.309 5 C -0.399 4.399 6 H 0.100 0.900 7 C -0.162 4.162 8 N -0.517 5.517 9 Si 0.679 3.321 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.235 1.235 13 C 0.041 3.959 14 H 0.080 0.920 15 C -0.167 4.167 16 C -0.191 4.191 17 C -0.014 4.014 18 O -0.314 6.314 19 C -0.028 4.028 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.259 7.552 6.177 10.286 hybrid contribution -0.775 -0.355 -0.644 1.068 sum -4.033 7.197 5.533 9.934 Atomic orbital electron populations 1.22722 0.99258 1.01749 1.00344 1.20609 0.91271 0.91994 0.91096 1.22241 1.01478 0.97809 0.99981 1.44303 1.65012 1.22963 0.98669 1.18672 1.17121 0.96579 1.07535 0.89960 1.25152 0.96735 0.97638 0.96639 1.70138 1.29124 1.31887 1.20580 0.87574 0.89556 0.76020 0.78918 1.20830 1.20138 1.23543 1.20845 0.93697 0.95451 0.85953 0.92037 1.22004 0.99504 1.01539 0.93698 1.22219 0.99788 0.99461 0.97635 1.22464 0.86501 0.97715 0.94750 1.87835 1.29645 1.84989 1.28893 1.23210 1.00965 0.97306 0.81291 0.93205 0.93516 0.92553 0.90069 0.92561 0.93731 0.93568 0.92793 0.91274 0.92137 0.91889 0.91786 0.89991 0.93558 0.89858 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 8.10 37.16 0.30 -3.29 16 2 C 0.16 3.37 2.24 -67.93 -0.15 3.22 16 3 C -0.16 -2.81 9.09 37.16 0.34 -2.48 16 4 N -0.59 -13.40 2.10 -157.98 -0.33 -13.74 16 5 C -0.27 -7.24 8.56 -15.06 -0.13 -7.37 16 6 H 0.08 2.34 6.91 -52.48 -0.36 1.98 16 7 C 0.04 1.11 4.76 -17.43 -0.08 1.02 16 8 N -0.88 -26.04 13.97 55.49 0.78 -25.27 16 9 Si 0.85 21.50 23.26 -169.99 -3.95 17.55 16 10 H -0.28 -6.84 6.06 56.52 0.34 -6.50 16 11 H -0.27 -6.90 6.43 56.52 0.36 -6.54 16 12 H -0.31 -8.03 7.11 56.52 0.40 -7.62 16 13 C 0.15 2.92 1.95 -67.79 -0.13 2.79 16 14 H 0.06 1.17 6.07 -51.92 -0.32 0.85 16 15 C -0.13 -2.31 5.33 -26.55 -0.14 -2.45 16 16 C -0.15 -2.24 6.13 -26.59 -0.16 -2.40 16 17 C 0.06 0.94 6.84 37.21 0.25 1.19 16 18 O -0.40 -7.18 10.77 -35.23 -0.38 -7.56 16 19 C 0.05 0.99 6.14 37.20 0.23 1.22 16 20 H 0.05 0.90 7.42 -51.93 -0.39 0.52 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.06 1.22 3.80 -51.93 -0.20 1.03 16 23 H 0.08 1.96 5.22 -51.93 -0.27 1.69 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.77 6.73 -51.93 -0.35 0.42 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.07 1.38 6.87 -51.93 -0.36 1.02 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.06 1.26 7.58 -51.93 -0.39 0.86 16 LS Contribution 261.02 15.07 3.93 3.93 Total: -1.00 -28.56 261.02 -5.30 -33.86 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.67 Total: -0.23 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 0.32 Total: -8.55 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.44 Total: -39.01 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.38 Total: -7.56 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -3.95 Total: 17.55 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.56 -5.30 -33.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.134 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds