Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47019 * 2 1 4 4 N 1.46494 * 109.47333 * 120.00245 * 2 1 3 5 5 C 1.36940 * 120.00320 * 123.86419 * 4 2 1 6 6 H 1.07999 * 120.00275 * 208.12446 * 5 4 2 7 7 C 1.38820 * 119.99381 * 28.11557 * 5 4 2 8 8 N 1.31614 * 120.00143 * 19.15978 * 7 5 4 9 9 Si 1.86800 * 119.99590 * 199.15292 * 7 5 4 10 10 H 1.48502 * 109.47309 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47280 * 120.00420 * 9 7 5 12 12 H 1.48501 * 109.47076 * 240.00329 * 9 7 5 13 13 C 1.46497 * 120.00073 * 303.86129 * 4 2 1 14 14 H 1.08998 * 109.57702 * 0.15768 * 13 4 2 15 15 C 1.53183 * 109.52262 * 120.31548 * 13 4 2 16 16 C 1.53178 * 109.03605 * 176.88461 * 15 13 4 17 17 C 1.53093 * 109.16809 * 303.02361 * 16 15 13 18 18 O 1.42906 * 109.41371 * 57.60388 * 17 16 15 19 19 C 1.42903 * 114.10028 * 298.84445 * 18 17 16 20 20 H 1.09006 * 109.46809 * 299.99628 * 1 2 3 21 21 H 1.08994 * 109.47322 * 59.99888 * 1 2 3 22 22 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46809 * 240.00372 * 2 1 3 24 24 H 1.08996 * 109.47199 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.47355 * 300.00650 * 3 2 1 26 26 H 1.09007 * 109.46867 * 59.99976 * 3 2 1 27 27 H 0.97005 * 119.99721 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.54187 * 57.02239 * 15 13 4 29 29 H 1.08996 * 109.53941 * 296.75451 * 15 13 4 30 30 H 1.08996 * 109.52050 * 183.10903 * 16 15 13 31 31 H 1.09007 * 109.51890 * 62.92629 * 16 15 13 32 32 H 1.09002 * 109.47263 * 297.62686 * 17 16 15 33 33 H 1.08991 * 109.48295 * 177.58950 * 17 16 15 34 34 H 1.08994 * 109.47714 * 181.14106 * 19 18 17 35 35 H 1.09000 * 109.48005 * 301.18026 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8697 -1.7561 1.0720 6 1 2.8817 -2.5285 1.8267 7 6 3.7171 -1.8433 -0.0241 8 7 3.9882 -0.7684 -0.7335 9 14 4.4726 -3.4863 -0.4920 10 1 4.0124 -4.5312 0.4576 11 1 4.0526 -3.8501 -1.8691 12 1 5.9531 -3.3841 -0.4368 13 6 1.5961 -0.2414 2.5250 14 1 0.9224 0.6096 2.4259 15 6 0.8746 -1.3841 3.2463 16 6 0.5071 -0.9284 4.6618 17 6 1.7778 -0.4894 5.3943 18 8 2.4160 0.5537 4.6548 19 6 2.8247 0.1710 3.3400 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 4.5807 -0.8293 -1.4992 28 1 1.5312 -2.2524 3.3018 29 1 -0.0319 -1.6451 2.7003 30 1 0.0425 -1.7538 5.2010 31 1 -0.1886 -0.0911 4.6057 32 1 2.4561 -1.3377 5.4855 33 1 1.5169 -0.1237 6.3873 34 1 3.3180 1.0123 2.8534 35 1 3.5167 -0.6687 3.4045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230073900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = -37.989238 kcal Electronic energy + Delta-G solvation = -15589.335786 eV Core-core repulsion = 13201.656862 eV Total energy + Delta-G solvation = -2387.678925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.79129 -36.19759 -32.71094 -31.82394 -30.81838 -27.90835 -26.01774 -24.30536 -23.92203 -22.15440 -19.71298 -19.13756 -16.58143 -15.37297 -15.23626 -14.83150 -14.19606 -13.98131 -13.74365 -13.19592 -12.66518 -12.08503 -12.05175 -11.92438 -11.51104 -11.25860 -11.04968 -10.89126 -10.71111 -10.51379 -10.30910 -10.21600 -9.96663 -9.74163 -9.58852 -9.26935 -8.76169 -8.37900 -6.64874 -5.79610 -3.21777 3.36172 3.45291 3.46630 4.39497 4.56798 5.27697 5.35417 5.38199 5.54540 5.61644 5.86012 5.90835 6.06440 6.20415 6.25939 6.36014 6.38812 6.46630 6.49759 6.63531 6.68531 6.76139 6.79166 6.90629 7.01970 7.10703 7.16885 7.68415 7.73116 7.85371 7.89276 8.48694 9.24487 9.87539 10.40607 11.27255 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027600 B = 0.012346 C = 0.010378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.245696 B = 2267.342757 C = 2697.462964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.182 3.818 3 C -0.145 4.145 4 N -0.577 5.577 5 C -0.252 4.252 6 H 0.065 0.935 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.291 1.291 13 C 0.148 3.852 14 H 0.058 0.942 15 C -0.130 4.130 16 C -0.152 4.152 17 C 0.064 3.936 18 O -0.398 6.398 19 C 0.054 3.946 20 H 0.037 0.963 21 H 0.039 0.961 22 H 0.044 0.956 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.252 0.748 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 0.765 6.050 8.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 C -0.204 4.204 4 N -0.298 5.298 5 C -0.382 4.382 6 H 0.083 0.917 7 C -0.193 4.193 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.219 1.219 13 C 0.040 3.960 14 H 0.076 0.924 15 C -0.169 4.169 16 C -0.191 4.191 17 C -0.013 4.013 18 O -0.316 6.316 19 C -0.024 4.024 20 H 0.056 0.944 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.115 0.885 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.234 0.967 5.969 7.997 hybrid contribution 0.394 -1.131 -0.456 1.281 sum -4.840 -0.164 5.514 7.338 Atomic orbital electron populations 1.22404 1.00353 1.00176 0.99299 1.20287 0.88286 0.91968 0.91913 1.22154 1.03358 0.97570 0.97351 1.43994 1.52614 1.34892 0.98309 1.19102 1.13412 0.97883 1.07808 0.91746 1.24985 0.97153 0.96683 1.00494 1.70047 1.37375 1.25914 1.20356 0.86332 0.78582 0.84266 0.78224 1.20379 1.21644 1.21852 1.20805 0.94148 0.94325 0.86752 0.92369 1.22047 1.00671 1.00464 0.93754 1.22213 0.98281 1.00841 0.97750 1.22425 0.93280 0.91115 0.94505 1.87835 1.78001 1.37471 1.28301 1.23230 0.97683 1.00691 0.80782 0.94401 0.94244 0.93664 0.88476 0.90771 0.95416 0.95889 0.93769 0.91777 0.92423 0.92043 0.91883 0.93812 0.90163 0.89557 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.12 37.16 0.34 -2.87 16 2 C 0.18 4.18 2.33 -67.93 -0.16 4.03 16 3 C -0.15 -3.19 9.05 37.16 0.34 -2.85 16 4 N -0.58 -13.69 2.33 -157.98 -0.37 -14.06 16 5 C -0.25 -6.57 8.29 -15.05 -0.12 -6.70 16 6 H 0.06 1.69 6.73 -52.49 -0.35 1.33 16 7 C 0.01 0.15 4.83 -17.43 -0.08 0.07 16 8 N -0.89 -24.60 10.21 55.49 0.57 -24.03 16 9 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.15 3.08 1.93 -67.79 -0.13 2.95 16 14 H 0.06 1.21 6.07 -51.93 -0.32 0.90 16 15 C -0.13 -2.41 5.32 -26.54 -0.14 -2.55 16 16 C -0.15 -2.33 6.14 -26.59 -0.16 -2.49 16 17 C 0.06 1.00 6.84 37.21 0.25 1.25 16 18 O -0.40 -7.61 10.77 -35.23 -0.38 -7.99 16 19 C 0.05 1.13 6.13 37.21 0.23 1.36 16 20 H 0.04 0.70 6.84 -51.93 -0.36 0.35 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.10 2.55 5.89 -51.93 -0.31 2.24 16 24 H 0.07 1.83 7.23 -51.93 -0.38 1.45 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.47 7.29 -51.93 -0.38 0.09 16 27 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.06 1.27 6.85 -51.93 -0.36 0.92 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 35 H 0.05 1.20 7.58 -51.93 -0.39 0.80 16 LS Contribution 270.28 15.07 4.07 4.07 Total: -1.00 -27.02 270.28 -6.55 -33.58 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.77 Total: 0.01 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 0.36 Total: -7.81 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.20 Total: -38.09 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.38 Total: -7.99 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.02 -6.55 -33.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.412 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds