Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47019 * 2 1 4 4 N 1.46494 * 109.47333 * 120.00245 * 2 1 3 5 5 C 1.36940 * 120.00320 * 123.86419 * 4 2 1 6 6 H 1.07999 * 120.00275 * 208.12446 * 5 4 2 7 7 C 1.38820 * 119.99381 * 28.11557 * 5 4 2 8 8 N 1.31614 * 120.00143 * 19.15978 * 7 5 4 9 9 Si 1.86800 * 119.99590 * 199.15292 * 7 5 4 10 10 H 1.48502 * 109.47309 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47280 * 120.00420 * 9 7 5 12 12 H 1.48501 * 109.47076 * 240.00329 * 9 7 5 13 13 C 1.46497 * 120.00073 * 303.86129 * 4 2 1 14 14 H 1.08998 * 109.57702 * 0.15768 * 13 4 2 15 15 C 1.53183 * 109.52262 * 120.31548 * 13 4 2 16 16 C 1.53178 * 109.03605 * 176.88461 * 15 13 4 17 17 C 1.53093 * 109.16809 * 303.02361 * 16 15 13 18 18 O 1.42906 * 109.41371 * 57.60388 * 17 16 15 19 19 C 1.42903 * 114.10028 * 298.84445 * 18 17 16 20 20 H 1.09006 * 109.46809 * 299.99628 * 1 2 3 21 21 H 1.08994 * 109.47322 * 59.99888 * 1 2 3 22 22 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46809 * 240.00372 * 2 1 3 24 24 H 1.08996 * 109.47199 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.47355 * 300.00650 * 3 2 1 26 26 H 1.09007 * 109.46867 * 59.99976 * 3 2 1 27 27 H 0.97005 * 119.99721 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.54187 * 57.02239 * 15 13 4 29 29 H 1.08996 * 109.53941 * 296.75451 * 15 13 4 30 30 H 1.08996 * 109.52050 * 183.10903 * 16 15 13 31 31 H 1.09007 * 109.51890 * 62.92629 * 16 15 13 32 32 H 1.09002 * 109.47263 * 297.62686 * 17 16 15 33 33 H 1.08991 * 109.48295 * 177.58950 * 17 16 15 34 34 H 1.08994 * 109.47714 * 181.14106 * 19 18 17 35 35 H 1.09000 * 109.48005 * 301.18026 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8697 -1.7561 1.0720 6 1 2.8817 -2.5285 1.8267 7 6 3.7171 -1.8433 -0.0241 8 7 3.9882 -0.7684 -0.7335 9 14 4.4726 -3.4863 -0.4920 10 1 4.0124 -4.5312 0.4576 11 1 4.0526 -3.8501 -1.8691 12 1 5.9531 -3.3841 -0.4368 13 6 1.5961 -0.2414 2.5250 14 1 0.9224 0.6096 2.4259 15 6 0.8746 -1.3841 3.2463 16 6 0.5071 -0.9284 4.6618 17 6 1.7778 -0.4894 5.3943 18 8 2.4160 0.5537 4.6548 19 6 2.8247 0.1710 3.3400 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 4.5807 -0.8293 -1.4992 28 1 1.5312 -2.2524 3.3018 29 1 -0.0319 -1.6451 2.7003 30 1 0.0425 -1.7538 5.2010 31 1 -0.1886 -0.0911 4.6057 32 1 2.4561 -1.3377 5.4855 33 1 1.5169 -0.1237 6.3873 34 1 3.3180 1.0123 2.8534 35 1 3.5167 -0.6687 3.4045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230073900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = -53.475319 kcal Electronic energy + Delta-G solvation = -15590.007313 eV Core-core repulsion = 13201.656862 eV Total energy + Delta-G solvation = -2388.350452 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34059 -37.92739 -34.25301 -33.74992 -32.39401 -29.68437 -27.69906 -25.98396 -25.63583 -23.70023 -21.24132 -20.98282 -18.34754 -17.02454 -16.80490 -16.57081 -15.91997 -15.68192 -15.33861 -14.72413 -14.38878 -13.77271 -13.69769 -13.43364 -13.23380 -12.93022 -12.78029 -12.70745 -12.39433 -12.12590 -12.02818 -11.82505 -11.75505 -11.36096 -11.26725 -11.03702 -10.40700 -10.26398 -8.56052 -7.80719 -5.23893 1.45345 1.49618 1.57395 2.52982 3.00835 3.33002 3.66809 4.06296 4.12957 4.23035 4.33700 4.43693 4.53900 4.64995 4.77631 4.81158 4.91346 4.95019 4.96944 5.02603 5.09810 5.13641 5.17077 5.23719 5.37171 5.48688 5.55505 5.72163 5.82601 6.03408 6.32578 6.51694 7.25702 7.97170 8.44224 9.23697 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027600 B = 0.012346 C = 0.010378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.245696 B = 2267.342757 C = 2697.462964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.176 3.824 3 C -0.132 4.132 4 N -0.588 5.588 5 C -0.251 4.251 6 H 0.060 0.940 7 C -0.042 4.042 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.297 1.297 13 C 0.147 3.853 14 H 0.062 0.938 15 C -0.124 4.124 16 C -0.143 4.143 17 C 0.055 3.945 18 O -0.406 6.406 19 C 0.068 3.932 20 H 0.049 0.951 21 H 0.059 0.941 22 H 0.040 0.960 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.246 0.754 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 0.583 7.354 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.070 3.930 3 C -0.191 4.191 4 N -0.310 5.310 5 C -0.381 4.381 6 H 0.078 0.922 7 C -0.238 4.238 8 N -0.562 5.562 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.220 1.220 12 H -0.224 1.224 13 C 0.040 3.960 14 H 0.080 0.920 15 C -0.163 4.163 16 C -0.181 4.181 17 C -0.022 4.022 18 O -0.325 6.325 19 C -0.011 4.011 20 H 0.068 0.932 21 H 0.078 0.922 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.803 0.781 7.299 10.008 hybrid contribution 0.851 -1.051 -0.786 1.564 sum -5.952 -0.270 6.513 8.827 Atomic orbital electron populations 1.22214 0.97351 1.00430 1.00858 1.20274 0.90534 0.91777 0.90434 1.21978 1.01045 0.97467 0.98648 1.44169 1.52468 1.34665 0.99733 1.19253 1.13119 0.98398 1.07376 0.92215 1.25576 0.98198 0.99039 1.01009 1.70184 1.38207 1.27171 1.20625 0.85460 0.77350 0.81482 0.77626 1.19656 1.22000 1.22435 1.20920 0.94135 0.95369 0.85588 0.91996 1.21940 0.99862 0.98713 0.95826 1.22165 0.98275 1.02204 0.95498 1.22758 0.93211 0.90618 0.95579 1.87819 1.78441 1.38902 1.27303 1.22890 0.97253 0.98901 0.82037 0.93196 0.92234 0.94064 0.91959 0.94159 0.93661 0.94835 0.94418 0.93535 0.92331 0.89078 0.90910 0.93834 0.86670 0.91570 0.94921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 9.12 71.98 0.66 -4.94 16 2 C 0.18 8.07 2.33 44.99 0.10 8.17 16 3 C -0.13 -5.78 9.05 71.98 0.65 -5.12 16 4 N -0.59 -27.96 2.33 -653.74 -1.52 -29.48 16 5 C -0.25 -13.21 8.29 84.03 0.70 -12.51 16 6 H 0.06 3.15 6.73 -2.91 -0.02 3.13 16 7 C -0.04 -2.27 4.83 84.86 0.41 -1.86 16 8 N -0.92 -51.79 10.21 21.65 0.22 -51.57 16 9 Si 0.95 44.38 29.59 68.60 2.03 46.41 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 13 C 0.15 5.99 1.93 45.09 0.09 6.08 16 14 H 0.06 2.47 6.07 -2.39 -0.01 2.46 16 15 C -0.12 -4.37 5.32 30.72 0.16 -4.21 16 16 C -0.14 -3.87 6.14 30.68 0.19 -3.68 16 17 C 0.05 1.54 6.84 72.01 0.49 2.04 16 18 O -0.41 -14.87 10.77 -148.98 -1.60 -16.47 16 19 C 0.07 2.82 6.13 72.01 0.44 3.26 16 20 H 0.05 1.73 6.84 -2.38 -0.02 1.71 16 21 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 22 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.06 3.32 5.89 -2.38 -0.01 3.30 16 24 H 0.04 2.01 7.23 -2.39 -0.02 1.99 16 25 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.03 1.35 7.29 -2.38 -0.02 1.33 16 27 H 0.25 13.67 8.31 -92.70 -0.77 12.90 16 28 H 0.05 1.79 6.85 -2.39 -0.02 1.78 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.03 1.48 7.58 -2.39 -0.02 1.46 16 Total: -1.00 -58.02 270.28 4.06 -53.95 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.04 Total: 9.93 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 3.89 Total: -12.77 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -1.30 Total: -81.05 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -1.60 Total: -16.47 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -58.02 4.06 -53.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.478 kcal (2) G-P(sol) polarization free energy of solvation -58.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds