Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47225 * 2 1 4 4 N 1.46496 * 109.47213 * 179.97438 * 3 2 1 5 5 C 1.36945 * 119.99652 * 94.81009 * 4 3 2 6 6 H 1.07996 * 119.99692 * 213.14720 * 5 4 3 7 7 C 1.38814 * 119.99731 * 33.15522 * 5 4 3 8 8 N 1.31617 * 120.00165 * 22.99543 * 7 5 4 9 9 Si 1.86802 * 119.99731 * 202.99594 * 7 5 4 10 10 H 1.48502 * 109.47107 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46992 * 300.00071 * 9 7 5 12 12 H 1.48502 * 109.47085 * 59.99993 * 9 7 5 13 13 C 1.46502 * 120.00424 * 274.81903 * 4 3 2 14 14 H 1.08994 * 109.51596 * 0.12175 * 13 4 3 15 15 C 1.53177 * 109.51967 * 239.99840 * 13 4 3 16 16 C 1.53172 * 109.03597 * 183.10954 * 15 13 4 17 17 C 1.53097 * 109.16378 * 56.97940 * 16 15 13 18 18 O 1.42898 * 109.41417 * 302.39417 * 17 16 15 19 19 C 1.42899 * 114.09896 * 61.15505 * 18 17 16 20 20 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47174 * 299.99819 * 1 2 3 22 22 H 1.09004 * 109.47319 * 59.99841 * 1 2 3 23 23 H 1.08998 * 109.46798 * 240.00037 * 2 1 3 24 24 H 1.08996 * 109.46726 * 120.00235 * 2 1 3 25 25 H 1.09005 * 109.46897 * 60.00011 * 3 2 1 26 26 H 1.09004 * 109.47102 * 300.00292 * 3 2 1 27 27 H 0.96999 * 119.99883 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.54342 * 302.97939 * 15 13 4 29 29 H 1.09007 * 109.54245 * 63.24350 * 15 13 4 30 30 H 1.08998 * 109.52387 * 176.88540 * 16 15 13 31 31 H 1.09006 * 109.52503 * 297.07818 * 16 15 13 32 32 H 1.08998 * 109.47912 * 62.37483 * 17 16 15 33 33 H 1.08997 * 109.48475 * 182.39661 * 17 16 15 34 34 H 1.09008 * 109.48198 * 178.86225 * 19 18 17 35 35 H 1.08999 * 109.48109 * 58.82994 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.5418 -1.1810 6 1 5.1383 1.0385 -1.2992 7 6 3.6659 2.2894 -2.2265 8 7 2.7933 3.2435 -1.9805 9 14 4.1989 1.9412 -3.9827 10 1 3.4995 2.8707 -4.9058 11 1 5.6662 2.1363 -4.1025 12 1 3.8553 0.5403 -4.3357 13 6 4.2371 1.3361 1.2651 14 1 3.5292 1.2644 2.0908 15 6 5.1181 2.5751 1.4523 16 6 5.9361 2.4169 2.7376 17 6 6.7570 1.1273 2.6554 18 8 5.8797 0.0181 2.4502 19 6 5.1236 0.0883 1.2397 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 2.4273 3.7661 -2.7111 28 1 5.7918 2.6754 0.6013 29 1 4.4888 3.4620 1.5274 30 1 6.6066 3.2689 2.8499 31 1 5.2633 2.3664 3.5938 32 1 7.4580 1.1950 1.8234 33 1 7.3087 0.9875 3.5850 34 1 4.4983 -0.8000 1.1496 35 1 5.8032 0.1424 0.3892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230073955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = -59.960778 kcal Electronic energy + Delta-G solvation = -15272.737333 eV Core-core repulsion = 12884.105651 eV Total energy + Delta-G solvation = -2388.631682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28668 -37.66799 -34.48073 -34.03375 -32.81659 -30.14547 -27.42732 -25.79598 -25.30794 -23.09733 -21.77296 -21.10035 -18.42302 -17.35150 -16.74166 -16.54091 -15.95840 -15.74553 -15.42484 -15.07651 -14.54453 -14.18354 -13.68825 -13.38935 -13.21992 -13.09462 -12.73677 -12.46921 -12.44529 -12.24658 -12.00718 -11.84404 -11.77528 -11.41223 -11.31012 -11.10740 -10.54563 -10.30054 -8.55987 -7.80966 -5.36842 1.45403 1.48661 1.54398 2.50335 2.98721 3.25148 3.65647 4.03858 4.10519 4.23285 4.28101 4.33597 4.43813 4.53280 4.61560 4.70572 4.80061 4.89331 4.89517 5.00849 5.08867 5.12267 5.18306 5.26407 5.35873 5.44486 5.53915 5.59086 5.70027 5.90606 6.29380 6.49097 7.18439 7.89041 8.39919 9.16147 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.012201 C = 0.009440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.648391 B = 2294.397470 C = 2965.243340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.145 3.855 4 N -0.592 5.592 5 C -0.253 4.253 6 H 0.057 0.943 7 C -0.038 4.038 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.294 1.294 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.141 3.859 14 H 0.057 0.943 15 C -0.119 4.119 16 C -0.144 4.144 17 C 0.058 3.942 18 O -0.400 6.400 19 C 0.066 3.934 20 H 0.065 0.935 21 H 0.056 0.944 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.016 0.984 26 H 0.071 0.929 27 H 0.250 0.750 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -4.037 7.119 8.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.314 5.314 5 C -0.384 4.384 6 H 0.075 0.925 7 C -0.235 4.235 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.221 1.221 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.034 3.966 14 H 0.075 0.925 15 C -0.158 4.158 16 C -0.183 4.183 17 C -0.018 4.018 18 O -0.319 6.319 19 C -0.012 4.012 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.470 -4.069 7.151 8.591 hybrid contribution 0.092 0.456 -1.419 1.493 sum 2.562 -3.613 5.733 7.244 Atomic orbital electron populations 1.21633 0.94969 1.01653 1.01321 1.21964 0.95972 0.99058 1.00047 1.20994 0.82914 0.93975 1.00240 1.44085 1.01388 1.84635 1.01247 1.19098 1.05065 1.23488 0.90715 0.92495 1.25664 1.00544 0.95269 1.02030 1.70120 1.34548 1.20137 1.31344 0.85602 0.77911 0.77382 0.81163 1.22056 1.20296 1.20683 1.21071 0.93309 0.93687 0.88538 0.92517 1.21861 0.98396 0.98395 0.97149 1.22193 0.99593 0.99029 0.97438 1.22728 0.91385 0.85413 1.02275 1.87818 1.57354 1.44827 1.41868 1.22865 0.93714 0.98982 0.85651 0.91646 0.92484 0.93842 0.94289 0.93231 0.96538 0.91088 0.94085 0.93768 0.94389 0.89601 0.91044 0.93628 0.86384 0.89765 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.91 71.98 0.71 -3.74 16 2 C -0.13 -5.17 6.26 30.59 0.19 -4.97 16 3 C 0.14 6.83 5.19 86.38 0.45 7.28 16 4 N -0.59 -29.00 2.40 -677.54 -1.63 -30.63 16 5 C -0.25 -13.52 8.20 84.03 0.69 -12.83 16 6 H 0.06 3.04 6.77 -2.91 -0.02 3.02 16 7 C -0.04 -2.09 4.91 84.86 0.42 -1.67 16 8 N -0.92 -52.95 11.32 21.65 0.25 -52.71 16 9 Si 0.95 44.33 29.61 68.60 2.03 46.36 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 C 0.14 5.94 2.84 45.08 0.13 6.06 16 14 H 0.06 2.34 7.86 -2.39 -0.02 2.32 16 15 C -0.12 -4.74 5.33 30.71 0.16 -4.58 16 16 C -0.14 -4.29 6.14 30.68 0.19 -4.10 16 17 C 0.06 1.65 6.84 72.01 0.49 2.14 16 18 O -0.40 -13.90 10.76 -148.98 -1.60 -15.51 16 19 C 0.07 2.55 6.13 72.01 0.44 3.00 16 20 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.02 0.76 8.03 -2.38 -0.02 0.74 16 26 H 0.07 3.84 5.31 -2.38 -0.01 3.83 16 27 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.04 1.95 7.57 -2.39 -0.02 1.93 16 29 H 0.04 1.64 8.14 -2.38 -0.02 1.63 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 35 H 0.04 1.53 6.87 -2.39 -0.02 1.52 16 Total: -1.00 -59.19 277.46 3.95 -55.24 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.03 Total: 10.66 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 3.87 Total: -13.41 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.38 Total: -83.34 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.60 Total: -15.51 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -59.19 3.95 -55.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.723 kcal (2) G-P(sol) polarization free energy of solvation -59.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds