Wall clock time and date at job start Mon Mar 30 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 N 1.46500 * 109.46980 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00326 * 264.51381 * 4 3 2 6 6 H 1.07996 * 120.00037 * 146.48905 * 5 4 3 7 7 C 1.38815 * 119.99806 * 326.49475 * 5 4 3 8 8 N 1.31613 * 120.00075 * 337.38270 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 157.38011 * 7 5 4 10 10 H 1.48501 * 109.46882 * 60.00268 * 9 7 5 11 11 H 1.48503 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47437 * 300.00078 * 9 7 5 13 13 C 1.46503 * 120.00239 * 84.51557 * 4 3 2 14 14 H 1.09008 * 109.51780 * 359.87470 * 13 4 3 15 15 C 1.53178 * 109.52457 * 119.99796 * 13 4 3 16 16 C 1.53172 * 109.03984 * 176.95400 * 15 13 4 17 17 C 1.53091 * 109.16192 * 303.02109 * 16 15 13 18 18 O 1.42909 * 109.42738 * 57.59932 * 17 16 15 19 19 C 1.42903 * 114.09745 * 298.86455 * 18 17 16 20 20 H 1.08998 * 109.47028 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47307 * 299.99805 * 1 2 3 22 22 H 1.09001 * 109.47345 * 60.00031 * 1 2 3 23 23 H 1.08997 * 109.47731 * 239.99894 * 2 1 3 24 24 H 1.09001 * 109.47345 * 119.99969 * 2 1 3 25 25 H 1.09000 * 109.46930 * 59.99964 * 3 2 1 26 26 H 1.08994 * 109.47057 * 299.99252 * 3 2 1 27 27 H 0.96996 * 120.00369 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.54025 * 57.08223 * 15 13 4 29 29 H 1.09001 * 109.61593 * 296.86398 * 15 13 4 30 30 H 1.08992 * 109.52516 * 183.11341 * 16 15 13 31 31 H 1.09001 * 109.57421 * 62.95113 * 16 15 13 32 32 H 1.09003 * 109.48320 * 177.58843 * 17 16 15 33 33 H 1.09000 * 109.48136 * 297.61458 * 17 16 15 34 34 H 1.08998 * 109.47306 * 301.15551 * 19 18 17 35 35 H 1.09000 * 109.48674 * 181.12910 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.5561 1.1814 6 1 5.1345 1.0495 1.3085 7 6 3.6677 2.3222 2.2148 8 7 2.7948 3.2722 1.9541 9 14 4.2048 2.0049 3.9756 10 1 5.6724 2.2015 4.0884 11 1 3.5078 2.9507 4.8838 12 1 3.8616 0.6106 4.3542 13 6 4.2380 1.3211 -1.2620 14 1 3.5307 1.2395 -2.0874 15 6 5.1192 2.5578 -1.4633 16 6 5.9370 2.3850 -2.7468 17 6 6.7578 1.0963 -2.6501 18 8 5.8806 -0.0107 -2.4321 19 6 5.1244 0.0735 -1.2225 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 2.4307 3.8078 2.6762 28 1 5.7929 2.6676 -0.6136 29 1 4.4912 3.4447 -1.5478 30 1 6.6075 3.2355 -2.8688 31 1 5.2649 2.3252 -3.6029 32 1 7.3092 0.9459 -3.5782 33 1 7.4590 1.1734 -1.8191 34 1 5.8040 0.1373 -0.3727 35 1 4.4991 -0.8136 -1.1221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230073961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:22 Heat of formation + Delta-G solvation = -44.399953 kcal Electronic energy + Delta-G solvation = -15271.454003 eV Core-core repulsion = 12883.497089 eV Total energy + Delta-G solvation = -2387.956914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.74429 -35.90613 -32.91633 -32.21107 -31.17132 -28.46901 -25.55767 -24.27544 -23.62425 -21.53532 -20.04898 -19.43697 -16.57697 -15.66018 -15.20842 -14.87180 -14.16985 -14.02457 -13.88005 -13.47694 -12.92462 -12.61341 -12.07518 -11.92622 -11.40625 -11.34565 -10.99948 -10.77736 -10.73038 -10.63283 -10.34946 -10.20406 -10.03876 -9.84056 -9.56858 -9.38431 -8.88879 -8.40475 -6.58501 -5.78521 -3.31376 3.36387 3.42749 3.45110 4.35895 4.53424 5.27114 5.33697 5.43361 5.56260 5.65790 5.84109 5.87578 5.89870 6.00990 6.06190 6.18980 6.29937 6.33033 6.49951 6.54307 6.59401 6.63575 6.76901 6.87457 6.93407 7.06621 7.23442 7.30214 7.72227 7.77886 7.85410 8.50891 9.19742 9.83678 10.39806 11.22233 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.012223 C = 0.009437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.868089 B = 2290.121475 C = 2966.476398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.146 3.854 4 N -0.578 5.578 5 C -0.255 4.255 6 H 0.061 0.939 7 C 0.010 3.990 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.146 3.854 14 H 0.054 0.946 15 C -0.124 4.124 16 C -0.154 4.154 17 C 0.064 3.936 18 O -0.396 6.396 19 C 0.052 3.948 20 H 0.039 0.961 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.018 0.982 27 H 0.254 0.746 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -3.210 -6.014 7.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.020 3.980 4 N -0.299 5.299 5 C -0.385 4.385 6 H 0.079 0.921 7 C -0.190 4.190 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.038 3.962 14 H 0.072 0.928 15 C -0.163 4.163 16 C -0.193 4.193 17 C -0.013 4.013 18 O -0.314 6.314 19 C -0.026 4.026 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.830 -3.226 -6.027 7.076 hybrid contribution 0.257 0.179 1.173 1.215 sum 2.088 -3.047 -4.853 6.099 Atomic orbital electron populations 1.21688 0.97545 0.99905 1.01092 1.22153 0.93759 1.01774 1.00533 1.21041 0.83067 0.92085 1.01812 1.43875 1.00897 1.84289 1.00834 1.18933 1.05560 1.23775 0.90198 0.92142 1.25051 0.99834 0.95073 0.99027 1.69989 1.33076 1.18772 1.31170 0.86498 0.78239 0.77738 0.85114 1.20841 1.21667 1.20935 1.20926 0.93028 0.92444 0.89839 0.92780 1.21972 0.98871 0.99862 0.95601 1.22253 0.99559 0.97630 0.99817 1.22454 0.91836 0.86718 1.00286 1.87822 1.57140 1.43303 1.43147 1.23168 0.94181 0.99923 0.85376 0.94189 0.93096 0.93642 0.94146 0.92562 0.88176 0.96361 0.93562 0.91398 0.92192 0.92020 0.91996 0.90099 0.93732 0.93076 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.15 0.37 -2.08 16 2 C -0.14 -2.86 6.25 -26.73 -0.17 -3.02 16 3 C 0.15 3.41 5.18 -4.04 -0.02 3.39 16 4 N -0.58 -14.02 2.40 -165.50 -0.40 -14.41 16 5 C -0.26 -6.72 8.20 -15.06 -0.12 -6.84 16 6 H 0.06 1.60 6.78 -52.49 -0.36 1.24 16 7 C 0.01 0.27 4.91 -17.43 -0.09 0.18 16 8 N -0.89 -25.02 11.34 55.49 0.63 -24.39 16 9 Si 0.89 21.31 29.61 -169.99 -5.03 16.28 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.15 3.09 2.83 -67.79 -0.19 2.90 16 14 H 0.05 1.14 7.87 -51.92 -0.41 0.73 16 15 C -0.12 -2.49 5.32 -26.55 -0.14 -2.63 16 16 C -0.15 -2.48 6.14 -26.60 -0.16 -2.64 16 17 C 0.06 1.01 6.84 37.20 0.25 1.26 16 18 O -0.40 -7.34 10.77 -35.23 -0.38 -7.72 16 19 C 0.05 1.02 6.13 37.20 0.23 1.25 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.10 2.64 5.33 -51.93 -0.28 2.36 16 26 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 28 H 0.07 1.49 7.57 -51.93 -0.39 1.10 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 1.06 6.88 -51.93 -0.36 0.70 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 277.51 15.07 4.18 4.18 Total: -1.00 -27.66 277.51 -7.04 -34.69 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.99 Total: -0.38 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.04 Total: -8.24 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.23 Total: -38.81 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.38 Total: -7.72 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.66 -7.04 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.707 kcal (2) G-P(sol) polarization free energy of solvation -27.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds