Wall clock time and date at job start Mon Mar 30 2020 03:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 N 1.46500 * 109.46980 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00326 * 264.51381 * 4 3 2 6 6 H 1.07996 * 120.00037 * 146.48905 * 5 4 3 7 7 C 1.38815 * 119.99806 * 326.49475 * 5 4 3 8 8 N 1.31613 * 120.00075 * 337.38270 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 157.38011 * 7 5 4 10 10 H 1.48501 * 109.46882 * 60.00268 * 9 7 5 11 11 H 1.48503 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47437 * 300.00078 * 9 7 5 13 13 C 1.46503 * 120.00239 * 84.51557 * 4 3 2 14 14 H 1.09008 * 109.51780 * 359.87470 * 13 4 3 15 15 C 1.53178 * 109.52457 * 119.99796 * 13 4 3 16 16 C 1.53172 * 109.03984 * 176.95400 * 15 13 4 17 17 C 1.53091 * 109.16192 * 303.02109 * 16 15 13 18 18 O 1.42909 * 109.42738 * 57.59932 * 17 16 15 19 19 C 1.42903 * 114.09745 * 298.86455 * 18 17 16 20 20 H 1.08998 * 109.47028 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47307 * 299.99805 * 1 2 3 22 22 H 1.09001 * 109.47345 * 60.00031 * 1 2 3 23 23 H 1.08997 * 109.47731 * 239.99894 * 2 1 3 24 24 H 1.09001 * 109.47345 * 119.99969 * 2 1 3 25 25 H 1.09000 * 109.46930 * 59.99964 * 3 2 1 26 26 H 1.08994 * 109.47057 * 299.99252 * 3 2 1 27 27 H 0.96996 * 120.00369 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.54025 * 57.08223 * 15 13 4 29 29 H 1.09001 * 109.61593 * 296.86398 * 15 13 4 30 30 H 1.08992 * 109.52516 * 183.11341 * 16 15 13 31 31 H 1.09001 * 109.57421 * 62.95113 * 16 15 13 32 32 H 1.09003 * 109.48320 * 177.58843 * 17 16 15 33 33 H 1.09000 * 109.48136 * 297.61458 * 17 16 15 34 34 H 1.08998 * 109.47306 * 301.15551 * 19 18 17 35 35 H 1.09000 * 109.48674 * 181.12910 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.5561 1.1814 6 1 5.1345 1.0495 1.3085 7 6 3.6677 2.3222 2.2148 8 7 2.7948 3.2722 1.9541 9 14 4.2048 2.0049 3.9756 10 1 5.6724 2.2015 4.0884 11 1 3.5078 2.9507 4.8838 12 1 3.8616 0.6106 4.3542 13 6 4.2380 1.3211 -1.2620 14 1 3.5307 1.2395 -2.0874 15 6 5.1192 2.5578 -1.4633 16 6 5.9370 2.3850 -2.7468 17 6 6.7578 1.0963 -2.6501 18 8 5.8806 -0.0107 -2.4321 19 6 5.1244 0.0735 -1.2225 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 2.4307 3.8078 2.6762 28 1 5.7929 2.6676 -0.6136 29 1 4.4912 3.4447 -1.5478 30 1 6.6075 3.2355 -2.8688 31 1 5.2649 2.3252 -3.6029 32 1 7.3092 0.9459 -3.5782 33 1 7.4590 1.1734 -1.8191 34 1 5.8040 0.1373 -0.3727 35 1 4.4991 -0.8136 -1.1221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230073961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:19 Heat of formation + Delta-G solvation = -60.110326 kcal Electronic energy + Delta-G solvation = -15272.135256 eV Core-core repulsion = 12883.497089 eV Total energy + Delta-G solvation = -2388.638167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.28446 -37.66637 -34.47959 -34.03763 -32.81518 -30.14725 -27.42654 -25.79633 -25.30658 -23.09937 -21.77230 -21.10072 -18.42356 -17.34913 -16.74054 -16.54112 -15.95984 -15.74595 -15.42243 -15.07922 -14.54369 -14.18322 -13.68700 -13.39070 -13.22034 -13.09455 -12.73834 -12.47157 -12.44446 -12.24845 -12.00588 -11.84156 -11.77428 -11.41389 -11.31136 -11.10512 -10.54654 -10.30173 -8.55559 -7.81145 -5.37302 1.45419 1.48612 1.54354 2.50268 2.98710 3.25287 3.65675 4.03784 4.10622 4.23311 4.28055 4.33563 4.43823 4.53230 4.61573 4.70564 4.80118 4.89462 4.89515 5.00903 5.08851 5.12259 5.18443 5.26286 5.35874 5.44461 5.53992 5.59095 5.69973 5.90252 6.29306 6.49222 7.18506 7.88917 8.40058 9.16202 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.012223 C = 0.009437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.868089 B = 2290.121475 C = 2966.476398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.146 3.854 4 N -0.592 5.592 5 C -0.254 4.254 6 H 0.057 0.943 7 C -0.038 4.038 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.141 3.859 14 H 0.056 0.944 15 C -0.118 4.118 16 C -0.144 4.144 17 C 0.058 3.942 18 O -0.400 6.400 19 C 0.066 3.934 20 H 0.065 0.935 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.016 0.984 27 H 0.250 0.750 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 -4.133 -7.059 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.020 3.980 4 N -0.314 5.314 5 C -0.384 4.384 6 H 0.075 0.925 7 C -0.235 4.235 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.034 3.966 14 H 0.075 0.925 15 C -0.158 4.158 16 C -0.183 4.183 17 C -0.018 4.018 18 O -0.319 6.319 19 C -0.012 4.012 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.472 -4.164 -7.091 8.587 hybrid contribution 0.094 0.482 1.412 1.496 sum 2.566 -3.682 -5.679 7.238 Atomic orbital electron populations 1.21630 0.94966 1.01659 1.01323 1.21969 0.95983 0.99045 1.00066 1.20978 0.82920 0.93938 1.00188 1.44077 1.01373 1.84481 1.01426 1.19096 1.05328 1.22796 0.91180 0.92515 1.25677 1.00504 0.95194 1.02104 1.70117 1.34561 1.19835 1.31662 0.85597 0.77921 0.77326 0.81187 1.20294 1.22050 1.20666 1.21068 0.93296 0.93668 0.88558 0.92535 1.21856 0.98404 0.98390 0.97138 1.22188 0.99601 0.99020 0.97444 1.22729 0.91385 0.85490 1.02195 1.87821 1.57358 1.44599 1.42086 1.22863 0.93717 0.98967 0.85666 0.91634 0.93826 0.92504 0.93222 0.94257 0.91144 0.96587 0.94080 0.93780 0.94399 0.89610 0.91043 0.86384 0.93626 0.94467 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.91 71.98 0.71 -3.74 16 2 C -0.13 -5.17 6.25 30.59 0.19 -4.97 16 3 C 0.15 6.88 5.18 86.38 0.45 7.33 16 4 N -0.59 -29.01 2.40 -677.52 -1.63 -30.64 16 5 C -0.25 -13.54 8.20 84.03 0.69 -12.85 16 6 H 0.06 3.03 6.78 -2.91 -0.02 3.01 16 7 C -0.04 -2.07 4.91 84.86 0.42 -1.66 16 8 N -0.92 -52.98 11.34 21.65 0.25 -52.74 16 9 Si 0.95 44.32 29.61 68.60 2.03 46.36 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.14 5.95 2.83 45.08 0.13 6.07 16 14 H 0.06 2.33 7.87 -2.38 -0.02 2.32 16 15 C -0.12 -4.74 5.32 30.71 0.16 -4.58 16 16 C -0.14 -4.29 6.14 30.68 0.19 -4.10 16 17 C 0.06 1.65 6.84 72.01 0.49 2.15 16 18 O -0.40 -13.91 10.77 -148.98 -1.60 -15.51 16 19 C 0.07 2.55 6.13 72.01 0.44 3.00 16 20 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 21 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 3.81 5.33 -2.39 -0.01 3.80 16 26 H 0.02 0.74 8.04 -2.39 -0.02 0.72 16 27 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.04 1.95 7.57 -2.39 -0.02 1.93 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.53 6.88 -2.39 -0.02 1.51 16 35 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -59.21 277.51 3.95 -55.26 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.03 Total: 10.63 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 3.87 Total: -13.36 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -1.38 Total: -83.38 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.60 Total: -15.51 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.36 kcal Total: -59.21 3.95 -55.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.850 kcal (2) G-P(sol) polarization free energy of solvation -59.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds