Wall clock time and date at job start Mon Mar 30 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46953 * 2 1 4 4 N 1.46501 * 109.47051 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99719 * 270.00015 * 4 3 2 6 6 H 1.08002 * 119.99299 * 144.37069 * 5 4 3 7 7 C 1.38808 * 120.00119 * 324.36327 * 5 4 3 8 8 N 1.31621 * 120.00392 * 338.24525 * 7 5 4 9 9 Si 1.86799 * 120.00020 * 158.24880 * 7 5 4 10 10 H 1.48503 * 109.47420 * 59.99677 * 9 7 5 11 11 H 1.48495 * 109.47504 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47038 * 300.00108 * 9 7 5 13 13 C 1.46502 * 120.00037 * 90.00056 * 4 3 2 14 14 H 1.08999 * 110.05337 * 356.28918 * 13 4 3 15 15 C 1.54264 * 110.03084 * 234.87197 * 13 4 3 16 16 C 1.54880 * 104.19680 * 264.32430 * 15 13 4 17 17 C 1.54887 * 102.75189 * 322.06141 * 16 15 13 18 18 C 1.53876 * 110.03237 * 117.70735 * 13 4 3 19 19 H 1.09001 * 110.03323 * 359.94925 * 18 13 4 20 20 O 1.42895 * 110.03177 * 238.57172 * 18 13 4 21 21 H 1.09000 * 109.47131 * 300.00022 * 1 2 3 22 22 H 1.08995 * 109.46746 * 60.00349 * 1 2 3 23 23 H 1.09000 * 109.46732 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47131 * 239.99978 * 2 1 3 25 25 H 1.08995 * 109.46746 * 119.99651 * 2 1 3 26 26 H 1.09000 * 109.47221 * 60.00033 * 3 2 1 27 27 H 1.08997 * 109.47671 * 299.99940 * 3 2 1 28 28 H 0.96996 * 120.00361 * 175.50974 * 8 7 5 29 29 H 1.08998 * 110.48430 * 23.00639 * 15 13 4 30 30 H 1.09002 * 110.48512 * 145.64733 * 15 13 4 31 31 H 1.09004 * 110.75995 * 80.37688 * 16 15 13 32 32 H 1.09008 * 110.75740 * 203.74386 * 16 15 13 33 33 H 1.09003 * 110.48256 * 279.26276 * 17 16 15 34 34 H 1.09005 * 110.48869 * 156.62172 * 17 16 15 35 35 H 0.96701 * 114.00141 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4427 1.1869 6 1 5.1175 0.8978 1.2748 7 6 3.6896 2.1432 2.2761 8 7 2.8352 3.1270 2.0903 9 14 4.2299 1.6898 4.0058 10 1 5.7019 1.8478 4.1221 11 1 3.5580 2.5821 4.9843 12 1 3.8599 0.2791 4.2862 13 6 4.2381 1.4423 -1.2678 14 1 3.5404 1.3759 -2.1027 15 6 5.2245 0.2570 -1.3079 16 6 6.5699 0.8665 -0.8418 17 6 6.5546 2.2699 -1.4969 18 6 5.0838 2.7222 -1.3880 19 1 4.9481 3.3439 -0.5030 20 8 4.7072 3.4495 -2.5590 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 2.4363 3.5736 2.8533 29 1 4.9044 -0.5290 -0.6238 30 1 5.3129 -0.1317 -2.3224 31 1 6.6015 0.9478 0.2447 32 1 7.4095 0.2772 -1.2107 33 1 6.8577 2.2064 -2.5420 34 1 7.2052 2.9530 -0.9508 35 1 5.2050 4.2681 -2.6906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252440854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:52 Heat of formation + Delta-G solvation = -48.448294 kcal Electronic energy + Delta-G solvation = -15385.997695 eV Core-core repulsion = 12997.865231 eV Total energy + Delta-G solvation = -2388.132463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.32219 -35.46699 -33.96099 -32.22944 -30.56003 -27.11580 -26.49220 -25.48440 -22.49957 -20.21282 -20.09580 -19.03949 -16.77152 -16.29387 -15.27547 -14.31737 -13.93398 -13.86442 -13.58241 -13.24739 -12.77803 -12.47346 -11.84002 -11.56085 -11.28972 -11.24394 -10.78091 -10.74294 -10.44903 -10.42725 -10.35446 -10.18153 -9.89624 -9.79481 -9.46098 -9.39274 -9.05956 -8.40433 -6.56032 -5.70178 -3.32456 3.37721 3.44574 3.46587 4.50034 4.91549 5.29174 5.37065 5.46044 5.70596 5.76288 5.91862 5.98716 6.19051 6.24860 6.26999 6.33784 6.43953 6.59172 6.60261 6.62478 6.68767 6.76812 6.88418 6.95864 7.00096 7.02203 7.19931 7.36330 7.82641 7.90751 8.37843 8.56334 9.24019 9.87945 10.45582 11.24860 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.014346 C = 0.010690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.394977 B = 1951.281385 C = 2618.752431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.143 3.857 4 N -0.575 5.575 5 C -0.252 4.252 6 H 0.066 0.934 7 C 0.008 3.992 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.177 3.823 14 H 0.059 0.941 15 C -0.127 4.127 16 C -0.118 4.118 17 C -0.151 4.151 18 C 0.083 3.917 19 H 0.078 0.922 20 O -0.575 6.575 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.021 0.979 28 H 0.253 0.747 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 -2.756 -5.197 6.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.294 5.294 5 C -0.381 4.381 6 H 0.084 0.916 7 C -0.191 4.191 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.069 3.931 14 H 0.078 0.922 15 C -0.167 4.167 16 C -0.155 4.155 17 C -0.189 4.189 18 C 0.022 3.978 19 H 0.096 0.904 20 O -0.379 6.379 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.069 -3.088 -5.133 6.338 hybrid contribution 0.693 0.286 1.060 1.299 sum 2.762 -2.802 -4.073 5.663 Atomic orbital electron populations 1.21699 0.97679 0.99838 1.01052 1.22091 0.93542 1.01696 1.00540 1.21036 0.83326 0.92259 1.01661 1.43959 1.00801 1.84566 1.00112 1.19074 1.07280 1.23631 0.88137 0.91617 1.25103 1.00304 0.94858 0.98880 1.70052 1.32670 1.20437 1.29660 0.86574 0.78321 0.78011 0.85139 1.20835 1.21738 1.20997 1.20866 0.92511 0.90081 0.89679 0.92236 1.22680 0.95751 0.98966 0.99276 1.22436 0.96756 0.94944 1.01370 1.23000 0.98260 0.97915 0.99772 1.23440 0.92204 0.95236 0.86883 0.90397 1.86498 1.65545 1.38911 1.46926 0.93131 0.93672 0.94245 0.94186 0.92538 0.88575 0.96061 0.93701 0.91115 0.93224 0.90342 0.93334 0.92204 0.92666 0.79290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.91 37.16 0.37 -2.14 16 2 C -0.14 -2.85 6.26 -26.73 -0.17 -3.02 16 3 C 0.14 3.41 5.26 -4.04 -0.02 3.39 16 4 N -0.57 -14.05 2.31 -164.40 -0.38 -14.43 16 5 C -0.25 -6.56 7.89 -15.06 -0.12 -6.68 16 6 H 0.07 1.69 5.48 -52.49 -0.29 1.41 16 7 C 0.01 0.23 4.96 -17.43 -0.09 0.14 16 8 N -0.89 -25.08 11.35 55.49 0.63 -24.45 16 9 Si 0.89 21.25 29.61 -169.99 -5.03 16.22 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.18 3.86 3.28 -66.81 -0.22 3.64 16 14 H 0.06 1.33 7.68 -51.93 -0.40 0.93 16 15 C -0.13 -2.43 5.93 -25.08 -0.15 -2.58 16 16 C -0.12 -2.10 6.52 -24.74 -0.16 -2.26 16 17 C -0.15 -2.66 6.55 -25.08 -0.16 -2.82 16 18 C 0.08 1.72 3.76 -25.62 -0.10 1.62 16 19 H 0.08 1.91 7.45 -51.93 -0.39 1.52 16 20 O -0.57 -11.13 13.22 -35.23 -0.47 -11.60 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.10 2.57 5.38 -51.93 -0.28 2.29 16 27 H 0.02 0.50 7.97 -51.93 -0.41 0.09 16 28 H 0.25 6.98 8.32 -40.82 -0.34 6.64 16 29 H 0.07 1.42 7.89 -51.93 -0.41 1.01 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.54 6.15 -51.93 -0.32 1.22 16 32 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 33 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.36 5.31 9.11 45.56 0.42 5.73 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -28.40 276.78 -6.91 -35.31 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.02 Total: 5.48 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.82 Total: -10.70 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.25 Total: -38.88 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.47 Total: -11.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.40 -6.91 -35.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252440854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.141 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds