Wall clock time and date at job start Mon Mar 30 2020 03:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46953 * 2 1 4 4 N 1.46501 * 109.47051 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99719 * 270.00015 * 4 3 2 6 6 H 1.08002 * 119.99299 * 144.37069 * 5 4 3 7 7 C 1.38808 * 120.00119 * 324.36327 * 5 4 3 8 8 N 1.31621 * 120.00392 * 338.24525 * 7 5 4 9 9 Si 1.86799 * 120.00020 * 158.24880 * 7 5 4 10 10 H 1.48503 * 109.47420 * 59.99677 * 9 7 5 11 11 H 1.48495 * 109.47504 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47038 * 300.00108 * 9 7 5 13 13 C 1.46502 * 120.00037 * 90.00056 * 4 3 2 14 14 H 1.08999 * 110.05337 * 356.28918 * 13 4 3 15 15 C 1.54264 * 110.03084 * 234.87197 * 13 4 3 16 16 C 1.54880 * 104.19680 * 264.32430 * 15 13 4 17 17 C 1.54887 * 102.75189 * 322.06141 * 16 15 13 18 18 C 1.53876 * 110.03237 * 117.70735 * 13 4 3 19 19 H 1.09001 * 110.03323 * 359.94925 * 18 13 4 20 20 O 1.42895 * 110.03177 * 238.57172 * 18 13 4 21 21 H 1.09000 * 109.47131 * 300.00022 * 1 2 3 22 22 H 1.08995 * 109.46746 * 60.00349 * 1 2 3 23 23 H 1.09000 * 109.46732 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47131 * 239.99978 * 2 1 3 25 25 H 1.08995 * 109.46746 * 119.99651 * 2 1 3 26 26 H 1.09000 * 109.47221 * 60.00033 * 3 2 1 27 27 H 1.08997 * 109.47671 * 299.99940 * 3 2 1 28 28 H 0.96996 * 120.00361 * 175.50974 * 8 7 5 29 29 H 1.08998 * 110.48430 * 23.00639 * 15 13 4 30 30 H 1.09002 * 110.48512 * 145.64733 * 15 13 4 31 31 H 1.09004 * 110.75995 * 80.37688 * 16 15 13 32 32 H 1.09008 * 110.75740 * 203.74386 * 16 15 13 33 33 H 1.09003 * 110.48256 * 279.26276 * 17 16 15 34 34 H 1.09005 * 110.48869 * 156.62172 * 17 16 15 35 35 H 0.96701 * 114.00141 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4427 1.1869 6 1 5.1175 0.8978 1.2748 7 6 3.6896 2.1432 2.2761 8 7 2.8352 3.1270 2.0903 9 14 4.2299 1.6898 4.0058 10 1 5.7019 1.8478 4.1221 11 1 3.5580 2.5821 4.9843 12 1 3.8599 0.2791 4.2862 13 6 4.2381 1.4423 -1.2678 14 1 3.5404 1.3759 -2.1027 15 6 5.2245 0.2570 -1.3079 16 6 6.5699 0.8665 -0.8418 17 6 6.5546 2.2699 -1.4969 18 6 5.0838 2.7222 -1.3880 19 1 4.9481 3.3439 -0.5030 20 8 4.7072 3.4495 -2.5590 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 2.4363 3.5736 2.8533 29 1 4.9044 -0.5290 -0.6238 30 1 5.3129 -0.1317 -2.3224 31 1 6.6015 0.9478 0.2447 32 1 7.4095 0.2772 -1.2107 33 1 6.8577 2.2064 -2.5420 34 1 7.2052 2.9530 -0.9508 35 1 5.2050 4.2681 -2.6906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252440854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:48 Heat of formation + Delta-G solvation = -66.651558 kcal Electronic energy + Delta-G solvation = -15386.787047 eV Core-core repulsion = 12997.865231 eV Total energy + Delta-G solvation = -2388.921816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96619 -37.21454 -35.54116 -34.06372 -32.35833 -28.69475 -28.16041 -27.32572 -24.28856 -21.94392 -21.57801 -20.80576 -18.44940 -18.15072 -17.07320 -16.13791 -15.59633 -15.52635 -15.23540 -14.81219 -14.51745 -14.14074 -13.37131 -13.15792 -13.09512 -12.93520 -12.60989 -12.45928 -12.14764 -12.08241 -11.97257 -11.82849 -11.52882 -11.44567 -11.24256 -11.16235 -10.68015 -10.40752 -8.54335 -7.71496 -5.37435 1.46715 1.49870 1.55339 2.54337 3.29261 3.33761 3.76734 3.92361 4.08407 4.29369 4.34168 4.49455 4.67318 4.70887 4.72051 4.82933 4.87318 4.93293 5.08575 5.11925 5.12756 5.21716 5.27780 5.34037 5.39805 5.42435 5.58829 5.63323 5.81601 5.93925 6.53868 7.00050 7.22605 7.93177 8.46571 9.20214 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.014346 C = 0.010690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.394977 B = 1951.281385 C = 2618.752431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.142 3.858 4 N -0.589 5.589 5 C -0.244 4.244 6 H 0.070 0.930 7 C -0.043 4.043 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.298 1.298 12 H -0.281 1.281 13 C 0.166 3.834 14 H 0.050 0.950 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.139 4.139 18 C 0.087 3.913 19 H 0.031 0.969 20 O -0.584 6.584 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.013 0.987 28 H 0.247 0.753 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -3.988 -6.177 8.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.017 3.983 4 N -0.309 5.309 5 C -0.374 4.374 6 H 0.087 0.913 7 C -0.239 4.239 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.225 1.225 12 H -0.207 1.207 13 C 0.059 3.941 14 H 0.069 0.931 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.177 4.177 18 C 0.027 3.973 19 H 0.049 0.951 20 O -0.391 6.391 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.217 -4.326 -6.133 8.166 hybrid contribution 0.337 0.710 1.255 1.481 sum 3.554 -3.617 -4.878 7.036 Atomic orbital electron populations 1.21639 0.95091 1.01643 1.01225 1.21899 0.95780 0.98920 1.00024 1.20964 0.83498 0.94106 0.99774 1.44157 1.01113 1.84832 1.00768 1.19302 1.07014 1.22284 0.88790 0.91295 1.25745 1.01094 0.95162 1.01908 1.70192 1.34440 1.21872 1.29936 0.85669 0.78105 0.77406 0.81310 1.20042 1.22471 1.20724 1.21096 0.93011 0.91962 0.88077 0.93127 1.22587 0.95409 0.97285 1.00551 1.22405 0.97243 0.95463 1.00067 1.22905 0.95645 0.97725 1.01433 1.23152 0.94512 0.94035 0.85623 0.95085 1.86444 1.66537 1.40231 1.45860 0.93883 0.92631 0.91569 0.93297 0.94242 0.91558 0.96810 0.94397 0.92386 0.90635 0.92611 0.89914 0.89704 0.91814 0.76882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.91 71.98 0.71 -3.89 16 2 C -0.13 -5.14 6.26 30.59 0.19 -4.95 16 3 C 0.14 6.94 5.26 86.38 0.45 7.39 16 4 N -0.59 -29.13 2.31 -674.03 -1.56 -30.69 16 5 C -0.24 -12.84 7.89 84.03 0.66 -12.18 16 6 H 0.07 3.55 5.48 -2.91 -0.02 3.54 16 7 C -0.04 -2.34 4.96 84.86 0.42 -1.92 16 8 N -0.92 -53.81 11.35 21.65 0.25 -53.56 16 9 Si 0.95 44.29 29.61 68.60 2.03 46.32 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.17 7.14 3.28 45.71 0.15 7.29 16 14 H 0.05 2.23 7.68 -2.39 -0.02 2.21 16 15 C -0.12 -4.29 5.93 31.66 0.19 -4.10 16 16 C -0.11 -3.77 6.52 31.88 0.21 -3.56 16 17 C -0.14 -4.51 6.55 31.67 0.21 -4.31 16 18 C 0.09 3.58 3.76 31.32 0.12 3.70 16 19 H 0.03 1.56 7.45 -2.39 -0.02 1.54 16 20 O -0.58 -21.91 13.22 -148.98 -1.97 -23.88 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 3.68 5.38 -2.39 -0.01 3.67 16 27 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 28 H 0.25 14.12 8.32 -92.71 -0.77 13.35 16 29 H 0.06 2.23 7.89 -2.39 -0.02 2.21 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.09 6.15 -2.39 -0.01 2.08 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16 34 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.38 10.63 9.11 -74.06 -0.67 9.95 16 Total: -1.00 -61.61 276.78 2.45 -59.17 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.38 Total: 19.17 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 3.31 Total: -16.52 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.31 Total: -84.25 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.97 Total: -23.88 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -61.61 2.45 -59.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252440854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.486 kcal (2) G-P(sol) polarization free energy of solvation -61.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds