Wall clock time and date at job start Mon Mar 30 2020 03:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 N 1.46505 * 109.47045 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99704 * 265.55311 * 4 3 2 6 6 H 1.08003 * 120.00312 * 148.24874 * 5 4 3 7 7 C 1.38813 * 120.00464 * 328.25019 * 5 4 3 8 8 N 1.31620 * 119.99239 * 335.34413 * 7 5 4 9 9 Si 1.86796 * 120.00576 * 155.34784 * 7 5 4 10 10 H 1.48494 * 109.47356 * 59.99619 * 9 7 5 11 11 H 1.48506 * 109.47247 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46833 * 299.99955 * 9 7 5 13 13 C 1.46497 * 120.00153 * 85.54800 * 4 3 2 14 14 H 1.08995 * 110.01871 * 1.39646 * 13 4 3 15 15 C 1.54268 * 110.06953 * 122.81181 * 13 4 3 16 16 C 1.54893 * 104.19565 * 142.92045 * 15 13 4 17 17 C 1.54893 * 102.74687 * 322.05532 * 16 15 13 18 18 C 1.53875 * 110.03458 * 240.00255 * 13 4 3 19 19 H 1.09000 * 110.03470 * 121.38423 * 18 13 4 20 20 O 1.42897 * 110.03229 * 359.95106 * 18 13 4 21 21 H 1.08991 * 109.47513 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46655 * 300.00279 * 1 2 3 23 23 H 1.09005 * 109.47020 * 59.99336 * 1 2 3 24 24 H 1.08999 * 109.46909 * 240.00255 * 2 1 3 25 25 H 1.08994 * 109.47425 * 120.00033 * 2 1 3 26 26 H 1.08999 * 109.47019 * 60.00322 * 3 2 1 27 27 H 1.09000 * 109.47508 * 299.99813 * 3 2 1 28 28 H 0.97003 * 119.99779 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.48444 * 261.59412 * 15 13 4 30 30 H 1.08995 * 110.48900 * 24.23983 * 15 13 4 31 31 H 1.08995 * 110.75953 * 80.37114 * 16 15 13 32 32 H 1.08997 * 110.75340 * 203.74301 * 16 15 13 33 33 H 1.09004 * 110.48586 * 279.26704 * 17 16 15 34 34 H 1.08998 * 110.48613 * 156.62302 * 17 16 15 35 35 H 0.96698 * 114.00044 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5342 1.1814 6 1 5.1490 1.0489 1.2890 7 6 3.6524 2.2510 2.2416 8 7 2.7838 3.2129 2.0122 9 14 4.1614 1.8504 3.9937 10 1 5.6269 2.0403 4.1391 11 1 3.4500 2.7529 4.9344 12 1 3.8121 0.4400 4.3004 13 6 4.2370 1.3442 -1.2658 14 1 3.5366 1.3044 -2.1000 15 6 5.1817 2.5532 -1.4262 16 6 6.4427 1.9627 -2.1046 17 6 6.5807 0.5784 -1.4234 18 6 5.1265 0.0886 -1.2640 19 1 4.8578 -0.5606 -2.0973 20 8 4.9793 -0.6138 -0.0283 21 1 -0.3634 -1.0275 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 2.4077 3.7136 2.7530 29 1 4.7259 3.3116 -2.0627 30 1 5.4335 2.9725 -0.4521 31 1 6.2878 1.8514 -3.1777 32 1 7.3164 2.5819 -1.9015 33 1 7.0584 0.6788 -0.4488 34 1 7.1459 -0.1043 -2.0579 35 1 5.5158 -1.4159 0.0345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252440855.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:59 Heat of formation + Delta-G solvation = -36.819007 kcal Electronic energy + Delta-G solvation = -15537.077249 eV Core-core repulsion = 13149.449069 eV Total energy + Delta-G solvation = -2387.628180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.30196 -35.11912 -33.99006 -32.14356 -30.50777 -27.02191 -26.48288 -25.35940 -22.37565 -20.22852 -20.04766 -19.01130 -16.71078 -16.28788 -14.74864 -14.43125 -14.02778 -13.73142 -13.54546 -13.12429 -12.65582 -12.57020 -11.82287 -11.31018 -11.20765 -11.10981 -10.69445 -10.63291 -10.44380 -10.43868 -10.25842 -10.11646 -9.91036 -9.72801 -9.36382 -9.31713 -8.89767 -8.21504 -6.37004 -5.56046 -3.00239 3.50283 3.56146 3.60295 4.66015 5.06188 5.27864 5.33931 5.46987 5.67561 5.72971 5.91899 5.97687 6.03547 6.16278 6.24722 6.28898 6.31761 6.51074 6.54878 6.66274 6.68083 6.75887 6.83376 6.92072 7.05095 7.08330 7.36586 7.48464 7.95409 8.17383 8.52340 8.78774 9.44278 10.08341 10.64492 11.45879 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.014844 C = 0.011183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.041083 B = 1885.879929 C = 2503.156508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.142 3.858 4 N -0.563 5.563 5 C -0.207 4.207 6 H 0.073 0.927 7 C -0.010 4.010 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.287 1.287 13 C 0.175 3.825 14 H 0.053 0.947 15 C -0.131 4.131 16 C -0.122 4.122 17 C -0.152 4.152 18 C 0.085 3.915 19 H 0.033 0.967 20 O -0.516 6.516 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.013 0.987 28 H 0.249 0.751 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 -5.139 -6.939 9.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.016 3.984 4 N -0.281 5.281 5 C -0.337 4.337 6 H 0.091 0.909 7 C -0.207 4.207 8 N -0.545 5.545 9 Si 0.723 3.277 10 H -0.213 1.213 11 H -0.222 1.222 12 H -0.214 1.214 13 C 0.066 3.934 14 H 0.072 0.928 15 C -0.171 4.171 16 C -0.160 4.160 17 C -0.190 4.190 18 C 0.024 3.976 19 H 0.051 0.949 20 O -0.316 6.316 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.301 -4.503 -6.684 8.381 hybrid contribution 0.646 -0.745 0.719 1.220 sum 2.947 -5.248 -5.966 8.474 Atomic orbital electron populations 1.21722 0.98023 0.99671 1.00916 1.22068 0.93008 1.01814 1.00581 1.21079 0.83610 0.92142 1.01619 1.43722 1.00469 1.83325 1.00557 1.19146 1.04023 1.22331 0.88179 0.90922 1.25000 1.00921 0.96151 0.98661 1.70022 1.34199 1.20290 1.29958 0.86510 0.77765 0.77702 0.85711 1.21266 1.22187 1.21419 1.20999 0.91927 0.90520 0.89957 0.92846 1.22826 0.94595 0.98305 1.01330 1.22349 0.98934 0.96223 0.98491 1.23060 0.98107 0.97058 1.00811 1.23038 0.94176 0.94683 0.85744 0.94894 1.87184 1.68690 1.39738 1.36007 0.94400 0.93175 0.93847 0.94535 0.92444 0.88081 0.96830 0.94087 0.93219 0.89430 0.92661 0.92500 0.90848 0.93257 0.81509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 37.16 0.37 -2.24 16 2 C -0.13 -2.87 6.26 -26.73 -0.17 -3.04 16 3 C 0.14 3.45 5.22 -4.04 -0.02 3.43 16 4 N -0.56 -14.01 2.08 -164.39 -0.34 -14.35 16 5 C -0.21 -5.63 6.97 -15.06 -0.11 -5.73 16 6 H 0.07 2.02 6.42 -52.48 -0.34 1.68 16 7 C -0.01 -0.29 4.89 -17.43 -0.09 -0.38 16 8 N -0.90 -26.39 11.33 55.49 0.63 -25.76 16 9 Si 0.89 22.51 29.62 -169.99 -5.03 17.48 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C 0.17 3.69 3.42 -66.81 -0.23 3.47 16 14 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 15 C -0.13 -2.62 6.41 -25.07 -0.16 -2.78 16 16 C -0.12 -1.96 6.91 -24.73 -0.17 -2.13 16 17 C -0.15 -2.47 6.55 -25.07 -0.16 -2.63 16 18 C 0.09 1.57 4.11 -25.61 -0.11 1.47 16 19 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 20 O -0.52 -10.33 9.88 -35.23 -0.35 -10.68 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.10 2.79 5.27 -51.93 -0.27 2.52 16 27 H 0.01 0.32 8.02 -51.93 -0.42 -0.10 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 2.06 7.01 -51.93 -0.36 1.70 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.34 5.21 9.11 45.56 0.42 5.62 16 LS Contribution 276.41 15.07 4.17 4.17 Total: -1.00 -29.83 276.41 -6.94 -36.77 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.17 Total: 2.94 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.84 Total: -10.56 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.29 Total: -40.11 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.35 Total: -10.68 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.83 -6.94 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252440855.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.052 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds