Wall clock time and date at job start Mon Mar 30 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46504 * 2 1 4 4 N 1.46497 * 109.47464 * 240.00500 * 2 1 3 5 5 C 1.36935 * 119.99976 * 65.87572 * 4 2 1 6 6 H 1.07999 * 120.00280 * 123.57346 * 5 4 2 7 7 C 1.38816 * 120.00174 * 303.57125 * 5 4 2 8 8 N 1.31614 * 120.00135 * 324.02881 * 7 5 4 9 9 Si 1.86802 * 120.00154 * 144.02562 * 7 5 4 10 10 H 1.48503 * 109.47068 * 90.00249 * 9 7 5 11 11 H 1.48497 * 109.47008 * 210.00483 * 9 7 5 12 12 H 1.48501 * 109.46927 * 330.00292 * 9 7 5 13 13 C 1.46497 * 119.99980 * 245.87408 * 4 2 1 14 14 H 1.08997 * 110.43486 * 1.09075 * 13 4 2 15 15 C 1.54265 * 110.48762 * 238.54435 * 13 4 2 16 16 C 1.53875 * 106.59762 * 217.70849 * 15 13 4 17 17 C 1.54266 * 106.60084 * 0.02562 * 16 15 13 18 18 C 1.54886 * 104.19514 * 23.60205 * 17 16 15 19 19 H 1.09000 * 110.75348 * 80.37870 * 18 17 16 20 20 O 1.42902 * 110.75635 * 203.74338 * 18 17 16 21 21 H 1.09000 * 109.46514 * 170.99272 * 1 2 3 22 22 H 1.08992 * 109.47337 * 50.99714 * 1 2 3 23 23 H 1.08998 * 109.47223 * 290.99256 * 1 2 3 24 24 H 1.08993 * 109.47362 * 119.99914 * 2 1 3 25 25 H 1.09002 * 109.46875 * 65.29430 * 3 2 1 26 26 H 1.09004 * 109.46819 * 185.28559 * 3 2 1 27 27 H 1.08997 * 109.47427 * 305.29403 * 3 2 1 28 28 H 0.97000 * 120.00584 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.03390 * 336.99656 * 15 13 4 30 30 H 1.08995 * 110.02898 * 98.38165 * 15 13 4 31 31 H 1.09004 * 110.02973 * 119.28239 * 16 15 13 32 32 H 1.08994 * 110.03512 * 240.66573 * 16 15 13 33 33 H 1.09000 * 110.49124 * 142.28692 * 17 16 15 34 34 H 1.09004 * 110.47968 * 264.92740 * 17 16 15 35 35 H 0.96700 * 114.00473 * 293.33088 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6905 -1.1962 5 6 1.7898 -0.1566 -2.4362 6 1 2.6190 0.0504 -3.0964 7 6 0.4920 0.1185 -2.8449 8 7 -0.4934 -0.6773 -2.4871 9 14 0.1439 1.6183 -3.9028 10 1 0.2523 1.2485 -5.3369 11 1 -1.2271 2.1148 -3.6218 12 1 1.1300 2.6839 -3.5904 13 6 2.7516 -1.9521 -1.0657 14 1 2.8272 -2.2416 -0.0176 15 6 4.1549 -1.8286 -1.6944 16 6 4.4503 -3.1753 -2.3778 17 6 3.2160 -4.0698 -2.1411 18 6 2.0624 -3.0670 -1.8913 19 1 1.6833 -2.6718 -2.8338 20 8 1.0132 -3.6792 -1.1387 21 1 -0.3632 -1.0150 -0.1609 22 1 -0.3633 0.6467 -0.7985 23 1 -0.3633 0.3681 0.9594 24 1 1.8934 -0.5138 0.8899 25 1 1.7560 1.9283 0.9336 26 1 3.1258 1.4441 -0.0947 27 1 1.6012 1.9831 -0.8387 28 1 -1.4003 -0.4849 -2.7723 29 1 4.1645 -1.0258 -2.4315 30 1 4.8953 -1.6323 -0.9191 31 1 4.6032 -3.0259 -3.4467 32 1 5.3348 -3.6328 -1.9347 33 1 3.0098 -4.6767 -3.0227 34 1 3.3664 -4.7037 -1.2671 35 1 0.5499 -4.3844 -1.6112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252466572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:01 Heat of formation + Delta-G solvation = -34.284399 kcal Electronic energy + Delta-G solvation = -15729.006318 eV Core-core repulsion = 13341.488047 eV Total energy + Delta-G solvation = -2387.518271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.08606 -35.58910 -33.98917 -31.61080 -30.08754 -26.84122 -26.18721 -25.59283 -23.52407 -19.81584 -19.58569 -19.14956 -16.44264 -15.92792 -15.28195 -14.37661 -14.06011 -13.59839 -13.09201 -12.67005 -12.39122 -12.31277 -11.82398 -11.45298 -11.18331 -10.95994 -10.92469 -10.72977 -10.55413 -10.46355 -10.29317 -10.00407 -9.83705 -9.64466 -9.51449 -9.19438 -8.79427 -7.85843 -6.33449 -5.61222 -3.41611 3.34200 3.45228 3.51348 4.50852 5.13745 5.22440 5.31912 5.46161 5.74313 5.81872 6.17527 6.27576 6.29507 6.33942 6.44718 6.53281 6.53758 6.64941 6.68088 6.77094 6.86234 6.97657 7.04927 7.15707 7.25379 7.26922 7.39716 7.62134 7.92312 8.06882 8.70084 8.75548 9.33635 9.85838 10.64856 11.12280 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.013173 C = 0.012409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.170378 B = 2124.980417 C = 2255.901595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.180 3.820 3 C -0.144 4.144 4 N -0.568 5.568 5 C -0.292 4.292 6 H 0.048 0.952 7 C 0.057 3.943 8 N -0.830 5.830 9 Si 0.857 3.143 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.274 1.274 13 C 0.181 3.819 14 H 0.051 0.949 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.162 4.162 18 C 0.099 3.901 19 H 0.081 0.919 20 O -0.554 6.554 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.002 0.998 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.252 0.748 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -3.247 1.627 6.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.074 3.926 3 C -0.203 4.203 4 N -0.288 5.288 5 C -0.421 4.421 6 H 0.065 0.935 7 C -0.150 4.150 8 N -0.465 5.465 9 Si 0.684 3.316 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.199 1.199 13 C 0.073 3.927 14 H 0.069 0.931 15 C -0.174 4.174 16 C -0.153 4.153 17 C -0.201 4.201 18 C 0.038 3.962 19 H 0.099 0.901 20 O -0.356 6.356 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.021 0.979 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.771 -2.817 2.087 5.921 hybrid contribution -0.543 0.377 -1.130 1.310 sum 4.227 -2.440 0.957 4.974 Atomic orbital electron populations 1.22369 0.97257 1.03439 0.96995 1.20346 0.93214 0.90888 0.88188 1.22045 1.00069 0.98868 0.99320 1.43725 1.64193 1.19069 1.01838 1.18297 0.89745 1.39909 0.94192 0.93496 1.25370 0.97529 0.96744 0.95372 1.70483 1.00228 1.32231 1.43552 0.87120 0.77418 0.86213 0.80810 1.21200 1.21507 1.19929 1.21149 0.89527 0.86465 0.95525 0.93073 1.22476 0.98122 0.96774 1.00004 1.21920 0.96786 0.96449 1.00109 1.23069 0.98009 0.98670 1.00336 1.23344 0.84831 0.91262 0.96743 0.90104 1.86512 1.50548 1.54257 1.44332 0.91348 0.92046 0.97873 0.94759 0.95156 0.94029 0.92587 0.93814 0.90587 0.93421 0.92587 0.93158 0.92991 0.92157 0.79918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 7.68 37.16 0.29 -3.13 16 2 C 0.18 4.16 3.37 -67.93 -0.23 3.93 16 3 C -0.14 -3.04 8.96 37.16 0.33 -2.71 16 4 N -0.57 -13.78 2.38 -156.27 -0.37 -14.15 16 5 C -0.29 -7.63 6.34 -15.06 -0.10 -7.72 16 6 H 0.05 1.27 7.00 -52.49 -0.37 0.91 16 7 C 0.06 1.49 3.57 -17.43 -0.06 1.43 16 8 N -0.83 -22.56 10.64 55.49 0.59 -21.97 16 9 Si 0.86 20.58 29.67 -169.99 -5.04 15.53 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.18 3.98 3.13 -66.26 -0.21 3.77 16 14 H 0.05 1.14 7.62 -51.93 -0.40 0.74 16 15 C -0.13 -2.57 6.42 -25.61 -0.16 -2.74 16 16 C -0.11 -1.90 6.80 -25.61 -0.17 -2.08 16 17 C -0.16 -2.80 6.55 -25.07 -0.16 -2.96 16 18 C 0.10 2.10 3.79 -24.73 -0.09 2.01 16 19 H 0.08 2.00 7.18 -51.93 -0.37 1.63 16 20 O -0.55 -11.95 13.45 -35.23 -0.47 -12.43 16 21 H 0.07 1.82 7.41 -51.93 -0.38 1.44 16 22 H 0.06 1.58 5.58 -51.93 -0.29 1.30 16 23 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 24 H 0.03 0.76 7.60 -51.93 -0.39 0.37 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.27 7.71 -51.93 -0.40 0.87 16 28 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.08 1.59 6.47 -51.93 -0.34 1.25 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.36 6.21 9.12 45.56 0.42 6.63 16 LS Contribution 273.21 15.07 4.12 4.12 Total: -1.00 -27.75 273.21 -6.80 -34.55 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.04 Total: 4.55 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.57 Total: -10.19 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.22 Total: -36.12 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.47 Total: -12.43 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.04 Total: 15.53 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.75 -6.80 -34.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252466572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.261 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds