Wall clock time and date at job start Mon Mar 30 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46504 * 2 1 4 4 N 1.46497 * 109.47464 * 240.00500 * 2 1 3 5 5 C 1.36935 * 119.99976 * 65.87572 * 4 2 1 6 6 H 1.07999 * 120.00280 * 123.57346 * 5 4 2 7 7 C 1.38816 * 120.00174 * 303.57125 * 5 4 2 8 8 N 1.31614 * 120.00135 * 324.02881 * 7 5 4 9 9 Si 1.86802 * 120.00154 * 144.02562 * 7 5 4 10 10 H 1.48503 * 109.47068 * 90.00249 * 9 7 5 11 11 H 1.48497 * 109.47008 * 210.00483 * 9 7 5 12 12 H 1.48501 * 109.46927 * 330.00292 * 9 7 5 13 13 C 1.46497 * 119.99980 * 245.87408 * 4 2 1 14 14 H 1.08997 * 110.43486 * 1.09075 * 13 4 2 15 15 C 1.54265 * 110.48762 * 238.54435 * 13 4 2 16 16 C 1.53875 * 106.59762 * 217.70849 * 15 13 4 17 17 C 1.54266 * 106.60084 * 0.02562 * 16 15 13 18 18 C 1.54886 * 104.19514 * 23.60205 * 17 16 15 19 19 H 1.09000 * 110.75348 * 80.37870 * 18 17 16 20 20 O 1.42902 * 110.75635 * 203.74338 * 18 17 16 21 21 H 1.09000 * 109.46514 * 170.99272 * 1 2 3 22 22 H 1.08992 * 109.47337 * 50.99714 * 1 2 3 23 23 H 1.08998 * 109.47223 * 290.99256 * 1 2 3 24 24 H 1.08993 * 109.47362 * 119.99914 * 2 1 3 25 25 H 1.09002 * 109.46875 * 65.29430 * 3 2 1 26 26 H 1.09004 * 109.46819 * 185.28559 * 3 2 1 27 27 H 1.08997 * 109.47427 * 305.29403 * 3 2 1 28 28 H 0.97000 * 120.00584 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.03390 * 336.99656 * 15 13 4 30 30 H 1.08995 * 110.02898 * 98.38165 * 15 13 4 31 31 H 1.09004 * 110.02973 * 119.28239 * 16 15 13 32 32 H 1.08994 * 110.03512 * 240.66573 * 16 15 13 33 33 H 1.09000 * 110.49124 * 142.28692 * 17 16 15 34 34 H 1.09004 * 110.47968 * 264.92740 * 17 16 15 35 35 H 0.96700 * 114.00473 * 293.33088 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6905 -1.1962 5 6 1.7898 -0.1566 -2.4362 6 1 2.6190 0.0504 -3.0964 7 6 0.4920 0.1185 -2.8449 8 7 -0.4934 -0.6773 -2.4871 9 14 0.1439 1.6183 -3.9028 10 1 0.2523 1.2485 -5.3369 11 1 -1.2271 2.1148 -3.6218 12 1 1.1300 2.6839 -3.5904 13 6 2.7516 -1.9521 -1.0657 14 1 2.8272 -2.2416 -0.0176 15 6 4.1549 -1.8286 -1.6944 16 6 4.4503 -3.1753 -2.3778 17 6 3.2160 -4.0698 -2.1411 18 6 2.0624 -3.0670 -1.8913 19 1 1.6833 -2.6718 -2.8338 20 8 1.0132 -3.6792 -1.1387 21 1 -0.3632 -1.0150 -0.1609 22 1 -0.3633 0.6467 -0.7985 23 1 -0.3633 0.3681 0.9594 24 1 1.8934 -0.5138 0.8899 25 1 1.7560 1.9283 0.9336 26 1 3.1258 1.4441 -0.0947 27 1 1.6012 1.9831 -0.8387 28 1 -1.4003 -0.4849 -2.7723 29 1 4.1645 -1.0258 -2.4315 30 1 4.8953 -1.6323 -0.9191 31 1 4.6032 -3.0259 -3.4467 32 1 5.3348 -3.6328 -1.9347 33 1 3.0098 -4.6767 -3.0227 34 1 3.3664 -4.7037 -1.2671 35 1 0.5499 -4.3844 -1.6112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252466572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:01 Heat of formation + Delta-G solvation = -52.072517 kcal Electronic energy + Delta-G solvation = -15729.777669 eV Core-core repulsion = 13341.488047 eV Total energy + Delta-G solvation = -2388.289621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.74577 -37.38649 -35.61033 -33.59604 -31.84242 -28.40339 -27.98086 -27.37294 -25.40455 -21.48465 -21.28686 -20.83839 -18.11354 -17.88100 -17.00823 -16.33802 -15.70099 -15.23922 -14.80499 -14.38295 -14.13889 -14.10498 -13.49449 -13.09284 -12.99255 -12.81694 -12.70828 -12.58499 -12.38899 -12.08443 -11.94574 -11.80700 -11.53707 -11.38201 -11.23193 -10.90642 -10.44617 -9.87818 -8.32093 -7.55082 -5.44336 1.40237 1.48671 1.56556 2.53209 3.19249 3.55333 3.70675 4.01634 4.20105 4.36465 4.46517 4.66456 4.74549 4.79777 4.84813 4.89812 4.96551 5.02377 5.09662 5.18823 5.25457 5.29161 5.39559 5.40528 5.49065 5.59719 5.68838 5.76628 5.87060 6.07313 6.69148 7.18556 7.38235 7.94605 8.67700 9.09923 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.013173 C = 0.012409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.170378 B = 2124.980417 C = 2255.901595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.170 3.830 3 C -0.133 4.133 4 N -0.580 5.580 5 C -0.289 4.289 6 H 0.034 0.966 7 C 0.024 3.976 8 N -0.853 5.853 9 Si 0.906 3.094 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.273 1.273 13 C 0.168 3.832 14 H 0.048 0.952 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.149 4.149 18 C 0.099 3.901 19 H 0.040 0.960 20 O -0.573 6.573 21 H 0.035 0.965 22 H 0.039 0.961 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.247 0.753 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -3.551 2.100 7.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.064 3.936 3 C -0.192 4.192 4 N -0.300 5.300 5 C -0.418 4.418 6 H 0.051 0.949 7 C -0.180 4.180 8 N -0.489 5.489 9 Si 0.733 3.267 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.198 1.198 13 C 0.061 3.939 14 H 0.066 0.934 15 C -0.167 4.167 16 C -0.147 4.147 17 C -0.187 4.187 18 C 0.039 3.961 19 H 0.058 0.942 20 O -0.378 6.378 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.117 -3.129 2.551 7.329 hybrid contribution -0.967 0.436 -1.233 1.626 sum 5.151 -2.693 1.318 5.960 Atomic orbital electron populations 1.22163 0.98152 1.00913 0.97355 1.20491 0.92523 0.92301 0.88258 1.21907 1.00137 0.97259 0.99866 1.43889 1.64463 1.20123 1.01562 1.18243 0.89273 1.39596 0.94724 0.94861 1.25790 0.97521 0.98178 0.96536 1.70567 1.00125 1.33129 1.45115 0.86357 0.76817 0.83930 0.79588 1.21188 1.21924 1.19842 1.21390 0.90870 0.85866 0.95725 0.93397 1.22362 0.96720 0.97696 0.99889 1.21915 0.97577 0.94788 1.00403 1.22942 0.96146 0.97966 1.01654 1.23168 0.85847 0.92545 0.94553 0.94243 1.86462 1.51263 1.55062 1.45006 0.94546 0.94162 0.95545 0.93665 0.92350 0.93453 0.94755 0.94300 0.92857 0.91706 0.92164 0.90085 0.91387 0.90788 0.78112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 7.68 71.98 0.55 -5.54 16 2 C 0.17 7.75 3.37 45.00 0.15 7.90 16 3 C -0.13 -5.40 8.96 71.98 0.64 -4.76 16 4 N -0.58 -28.10 2.38 -648.32 -1.55 -29.64 16 5 C -0.29 -15.20 6.34 84.03 0.53 -14.67 16 6 H 0.03 1.85 7.00 -2.91 -0.02 1.83 16 7 C 0.02 1.30 3.57 84.86 0.30 1.60 16 8 N -0.85 -47.34 10.64 21.65 0.23 -47.11 16 9 Si 0.91 42.83 29.67 68.60 2.04 44.87 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.17 7.29 3.13 46.07 0.14 7.43 16 14 H 0.05 2.08 7.62 -2.39 -0.02 2.06 16 15 C -0.13 -4.66 6.42 31.32 0.20 -4.46 16 16 C -0.11 -3.30 6.80 31.32 0.21 -3.08 16 17 C -0.15 -4.76 6.55 31.67 0.21 -4.55 16 18 C 0.10 4.19 3.79 31.89 0.12 4.31 16 19 H 0.04 1.99 7.18 -2.39 -0.02 1.97 16 20 O -0.57 -24.62 13.45 -148.98 -2.00 -26.63 16 21 H 0.04 1.95 7.41 -2.39 -0.02 1.93 16 22 H 0.04 2.08 5.58 -2.39 -0.01 2.06 16 23 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.05 1.94 7.60 -2.39 -0.02 1.93 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.03 1.52 7.71 -2.39 -0.02 1.50 16 28 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 29 H 0.05 2.19 6.47 -2.39 -0.02 2.18 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.37 12.88 9.12 -74.06 -0.68 12.21 16 Total: -1.00 -59.29 273.21 2.17 -57.12 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.38 Total: 17.20 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 3.07 Total: -15.81 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -1.31 Total: -76.75 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -2.00 Total: -26.63 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.04 Total: 44.87 kcal Total: -59.29 2.17 -57.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252466572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.047 kcal (2) G-P(sol) polarization free energy of solvation -59.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds