Wall clock time and date at job start Mon Mar 30 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 N 1.46497 * 109.47074 * 120.00312 * 2 1 3 5 5 C 1.36941 * 119.99609 * 306.05041 * 4 2 1 6 6 H 1.07999 * 119.99954 * 125.34246 * 5 4 2 7 7 C 1.38812 * 120.00047 * 305.33092 * 5 4 2 8 8 N 1.31612 * 120.00391 * 323.44469 * 7 5 4 9 9 Si 1.86800 * 119.99675 * 143.43731 * 7 5 4 10 10 H 1.48497 * 109.47457 * 60.00109 * 9 7 5 11 11 H 1.48500 * 109.47340 * 180.02562 * 9 7 5 12 12 H 1.48511 * 109.47206 * 300.00218 * 9 7 5 13 13 C 1.46497 * 120.00227 * 126.04752 * 4 2 1 14 14 H 1.09004 * 110.01628 * 0.70001 * 13 4 2 15 15 C 1.54270 * 110.03438 * 122.09338 * 13 4 2 16 16 C 1.54885 * 104.19645 * 142.89647 * 15 13 4 17 17 C 1.54891 * 102.74654 * 322.05534 * 16 15 13 18 18 C 1.53876 * 110.03486 * 239.30875 * 13 4 2 19 19 H 1.09003 * 110.03005 * 121.42677 * 18 13 4 20 20 O 1.42906 * 110.03095 * 0.02562 * 18 13 4 21 21 H 1.08997 * 109.46747 * 295.77299 * 1 2 3 22 22 H 1.08996 * 109.47066 * 175.76574 * 1 2 3 23 23 H 1.09001 * 109.46807 * 55.76643 * 1 2 3 24 24 H 1.08998 * 109.47057 * 239.99795 * 2 1 3 25 25 H 1.09006 * 109.46607 * 52.14319 * 3 2 1 26 26 H 1.08995 * 109.47176 * 172.13431 * 3 2 1 27 27 H 1.08991 * 109.47116 * 292.14244 * 3 2 1 28 28 H 0.96996 * 120.00075 * 179.97438 * 8 7 5 29 29 H 1.08995 * 110.48406 * 261.57750 * 15 13 4 30 30 H 1.09000 * 110.48397 * 24.08139 * 15 13 4 31 31 H 1.08990 * 110.75855 * 80.37362 * 16 15 13 32 32 H 1.09002 * 110.75467 * 203.56401 * 16 15 13 33 33 H 1.09009 * 110.48530 * 156.62036 * 17 16 15 34 34 H 1.09000 * 110.49140 * 279.26282 * 17 16 15 35 35 H 0.96699 * 114.00261 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5885 -0.2994 2.4360 6 1 1.1437 -1.0205 3.1058 7 6 1.7247 1.0240 2.8322 8 7 2.7857 1.7135 2.4702 9 14 0.4019 1.8264 3.8790 10 1 0.2622 1.0822 5.1564 11 1 0.7820 3.2333 4.1643 12 1 -0.8906 1.8018 3.1479 13 6 2.9664 -1.7999 1.0658 14 1 3.2059 -1.9645 0.0152 15 6 4.2531 -1.4914 1.8590 16 6 4.6723 -2.8603 2.4500 17 6 3.3129 -3.5029 2.8217 18 6 2.3682 -3.0792 1.6768 19 1 2.3181 -3.8649 0.9229 20 8 1.0625 -2.8113 2.1922 21 1 -0.3633 0.4468 0.9254 22 1 -0.3633 -1.0248 -0.0759 23 1 -0.3633 0.5781 -0.8496 24 1 1.8934 -0.5139 -0.8900 25 1 1.5666 1.9952 0.8115 26 1 3.1209 1.4457 0.1406 27 1 1.7961 1.9141 -0.9518 28 1 2.8807 2.6384 2.7467 29 1 5.0281 -1.1091 1.1950 30 1 4.0478 -0.7763 2.6557 31 1 5.1920 -3.4605 1.7034 32 1 5.2936 -2.7248 3.3354 33 1 3.4019 -4.5886 2.8602 34 1 2.9553 -3.1145 3.7754 35 1 0.6317 -3.5797 2.5909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252466573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:06 Heat of formation + Delta-G solvation = -21.671473 kcal Electronic energy + Delta-G solvation = -15887.189358 eV Core-core repulsion = 13500.218024 eV Total energy + Delta-G solvation = -2386.971333 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.20828 -35.47426 -33.90218 -31.45823 -29.96342 -26.75597 -26.27567 -25.57393 -23.29453 -20.03843 -19.55310 -18.92154 -16.62099 -16.00336 -14.66622 -14.30994 -14.24226 -13.55741 -13.16763 -12.83328 -12.30702 -12.15456 -11.61499 -11.50713 -10.96621 -10.89235 -10.74491 -10.66587 -10.38912 -10.26485 -10.06525 -10.01356 -9.70471 -9.60839 -9.42961 -9.30206 -8.85055 -7.70154 -6.20521 -5.48651 -3.18748 3.46261 3.53159 3.59177 4.63305 5.14281 5.32914 5.43317 5.48029 5.65950 5.80759 6.02734 6.26678 6.31692 6.39050 6.45234 6.55540 6.58837 6.70786 6.72759 6.81369 6.83993 6.97775 7.10168 7.12823 7.30247 7.36077 7.66768 7.72582 8.03984 8.21168 8.60945 9.07017 9.47858 10.02176 10.80707 11.27055 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.014188 C = 0.013087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.691163 B = 1973.089617 C = 2139.039107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.179 3.821 3 C -0.143 4.143 4 N -0.560 5.560 5 C -0.251 4.251 6 H 0.071 0.929 7 C 0.038 3.962 8 N -0.852 5.852 9 Si 0.859 3.141 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.282 1.282 13 C 0.177 3.823 14 H 0.045 0.955 15 C -0.125 4.125 16 C -0.123 4.123 17 C -0.149 4.149 18 C 0.088 3.912 19 H 0.030 0.970 20 O -0.515 6.515 21 H 0.060 0.940 22 H 0.039 0.961 23 H 0.026 0.974 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.001 0.999 28 H 0.249 0.751 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -7.242 -2.218 7.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.073 3.927 3 C -0.202 4.202 4 N -0.281 5.281 5 C -0.381 4.381 6 H 0.088 0.912 7 C -0.165 4.165 8 N -0.491 5.491 9 Si 0.687 3.313 10 H -0.208 1.208 11 H -0.222 1.222 12 H -0.209 1.209 13 C 0.069 3.931 14 H 0.064 0.936 15 C -0.164 4.164 16 C -0.161 4.161 17 C -0.187 4.187 18 C 0.026 3.974 19 H 0.048 0.952 20 O -0.315 6.315 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.771 -6.436 -2.443 6.927 hybrid contribution -0.716 -0.002 0.745 1.033 sum 0.055 -6.438 -1.698 6.658 Atomic orbital electron populations 1.22011 0.98437 0.99620 1.00120 1.20358 0.91792 0.92450 0.88145 1.22435 1.02453 0.97884 0.97450 1.43604 1.47394 1.35166 1.01894 1.18831 1.33585 0.92279 0.93357 0.91207 1.25398 0.95196 1.00009 0.95921 1.70458 1.23354 1.09657 1.45607 0.87109 0.84913 0.78227 0.81002 1.20767 1.22225 1.20877 1.21059 0.89318 0.88038 0.94728 0.93641 1.22792 0.96524 0.95847 1.01259 1.22358 0.95968 0.98200 0.99604 1.23028 0.97050 0.98116 1.00522 1.23061 0.83347 0.97955 0.92994 0.95242 1.87191 1.29508 1.35535 1.79309 0.92071 0.94222 0.95528 0.95243 0.91156 0.92313 0.98021 0.94052 0.93842 0.88129 0.93092 0.92737 0.93621 0.90801 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.14 37.16 0.34 -2.79 16 2 C 0.18 4.15 3.36 -67.93 -0.23 3.92 16 3 C -0.14 -3.42 7.67 37.16 0.29 -3.14 16 4 N -0.56 -13.57 1.99 -156.88 -0.31 -13.89 16 5 C -0.25 -6.64 5.68 -15.06 -0.09 -6.73 16 6 H 0.07 1.96 6.03 -52.49 -0.32 1.64 16 7 C 0.04 1.02 3.59 -17.43 -0.06 0.96 16 8 N -0.85 -23.55 10.50 55.49 0.58 -22.96 16 9 Si 0.86 21.37 29.68 -169.99 -5.04 16.32 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.18 3.79 3.43 -66.81 -0.23 3.56 16 14 H 0.05 0.94 7.60 -51.93 -0.39 0.54 16 15 C -0.13 -2.63 6.41 -25.07 -0.16 -2.79 16 16 C -0.12 -2.11 6.91 -24.74 -0.17 -2.29 16 17 C -0.15 -2.54 6.56 -25.02 -0.16 -2.70 16 18 C 0.09 1.66 4.15 -25.56 -0.11 1.55 16 19 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 20 O -0.52 -10.37 9.65 -35.23 -0.34 -10.71 16 21 H 0.06 1.48 7.38 -51.93 -0.38 1.09 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.03 0.64 7.58 -51.93 -0.39 0.25 16 25 H 0.07 1.84 5.35 -51.93 -0.28 1.56 16 26 H 0.06 1.51 7.51 -51.93 -0.39 1.12 16 27 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 2.54 7.03 -51.93 -0.37 2.17 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 35 H 0.34 5.22 9.11 45.56 0.42 5.64 16 LS Contribution 269.16 15.07 4.06 4.06 Total: -1.00 -28.16 269.16 -6.68 -34.84 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.04 Total: 2.79 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.58 Total: -10.45 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.27 Total: -36.85 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.34 Total: -10.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.04 Total: 16.32 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.16 -6.68 -34.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252466573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.167 kcal (2) G-P(sol) polarization free energy of solvation -28.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds