Wall clock time and date at job start Mon Mar 30 2020 03:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 N 1.46497 * 109.47074 * 120.00312 * 2 1 3 5 5 C 1.36941 * 119.99609 * 306.05041 * 4 2 1 6 6 H 1.07999 * 119.99954 * 125.34246 * 5 4 2 7 7 C 1.38812 * 120.00047 * 305.33092 * 5 4 2 8 8 N 1.31612 * 120.00391 * 323.44469 * 7 5 4 9 9 Si 1.86800 * 119.99675 * 143.43731 * 7 5 4 10 10 H 1.48497 * 109.47457 * 60.00109 * 9 7 5 11 11 H 1.48500 * 109.47340 * 180.02562 * 9 7 5 12 12 H 1.48511 * 109.47206 * 300.00218 * 9 7 5 13 13 C 1.46497 * 120.00227 * 126.04752 * 4 2 1 14 14 H 1.09004 * 110.01628 * 0.70001 * 13 4 2 15 15 C 1.54270 * 110.03438 * 122.09338 * 13 4 2 16 16 C 1.54885 * 104.19645 * 142.89647 * 15 13 4 17 17 C 1.54891 * 102.74654 * 322.05534 * 16 15 13 18 18 C 1.53876 * 110.03486 * 239.30875 * 13 4 2 19 19 H 1.09003 * 110.03005 * 121.42677 * 18 13 4 20 20 O 1.42906 * 110.03095 * 0.02562 * 18 13 4 21 21 H 1.08997 * 109.46747 * 295.77299 * 1 2 3 22 22 H 1.08996 * 109.47066 * 175.76574 * 1 2 3 23 23 H 1.09001 * 109.46807 * 55.76643 * 1 2 3 24 24 H 1.08998 * 109.47057 * 239.99795 * 2 1 3 25 25 H 1.09006 * 109.46607 * 52.14319 * 3 2 1 26 26 H 1.08995 * 109.47176 * 172.13431 * 3 2 1 27 27 H 1.08991 * 109.47116 * 292.14244 * 3 2 1 28 28 H 0.96996 * 120.00075 * 179.97438 * 8 7 5 29 29 H 1.08995 * 110.48406 * 261.57750 * 15 13 4 30 30 H 1.09000 * 110.48397 * 24.08139 * 15 13 4 31 31 H 1.08990 * 110.75855 * 80.37362 * 16 15 13 32 32 H 1.09002 * 110.75467 * 203.56401 * 16 15 13 33 33 H 1.09009 * 110.48530 * 156.62036 * 17 16 15 34 34 H 1.09000 * 110.49140 * 279.26282 * 17 16 15 35 35 H 0.96699 * 114.00261 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5885 -0.2994 2.4360 6 1 1.1437 -1.0205 3.1058 7 6 1.7247 1.0240 2.8322 8 7 2.7857 1.7135 2.4702 9 14 0.4019 1.8264 3.8790 10 1 0.2622 1.0822 5.1564 11 1 0.7820 3.2333 4.1643 12 1 -0.8906 1.8018 3.1479 13 6 2.9664 -1.7999 1.0658 14 1 3.2059 -1.9645 0.0152 15 6 4.2531 -1.4914 1.8590 16 6 4.6723 -2.8603 2.4500 17 6 3.3129 -3.5029 2.8217 18 6 2.3682 -3.0792 1.6768 19 1 2.3181 -3.8649 0.9229 20 8 1.0625 -2.8113 2.1922 21 1 -0.3633 0.4468 0.9254 22 1 -0.3633 -1.0248 -0.0759 23 1 -0.3633 0.5781 -0.8496 24 1 1.8934 -0.5139 -0.8900 25 1 1.5666 1.9952 0.8115 26 1 3.1209 1.4457 0.1406 27 1 1.7961 1.9141 -0.9518 28 1 2.8807 2.6384 2.7467 29 1 5.0281 -1.1091 1.1950 30 1 4.0478 -0.7763 2.6557 31 1 5.1920 -3.4605 1.7034 32 1 5.2936 -2.7248 3.3354 33 1 3.4019 -4.5886 2.8602 34 1 2.9553 -3.1145 3.7754 35 1 0.6317 -3.5797 2.5909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252466573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:05 Heat of formation + Delta-G solvation = -39.270343 kcal Electronic energy + Delta-G solvation = -15887.952502 eV Core-core repulsion = 13500.218024 eV Total energy + Delta-G solvation = -2387.734478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.81162 -37.24423 -35.43842 -33.46627 -31.72050 -28.36152 -27.97905 -27.38749 -25.18910 -21.54241 -21.36438 -20.58796 -18.22902 -17.87981 -16.35762 -16.26757 -15.93374 -15.11885 -14.86506 -14.44919 -14.15829 -13.98087 -13.33527 -13.23458 -12.84840 -12.74689 -12.64736 -12.32076 -12.25576 -11.86949 -11.78940 -11.70010 -11.41026 -11.35190 -11.24654 -11.01682 -10.33749 -9.74954 -8.21564 -7.43731 -5.23255 1.44437 1.50052 1.55563 2.61358 3.28627 3.59952 3.96808 4.00754 4.08487 4.40116 4.49644 4.62194 4.77300 4.78640 4.89476 4.95275 5.00021 5.04747 5.07668 5.24108 5.26888 5.33763 5.42009 5.44495 5.49043 5.60981 5.80760 5.94796 6.06251 6.14412 6.99893 7.29156 7.53537 8.09809 8.81354 9.21369 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.014188 C = 0.013087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.691163 B = 1973.089617 C = 2139.039107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.170 3.830 3 C -0.130 4.130 4 N -0.571 5.571 5 C -0.237 4.237 6 H 0.055 0.945 7 C 0.003 3.997 8 N -0.874 5.874 9 Si 0.900 3.100 10 H -0.282 1.282 11 H -0.301 1.301 12 H -0.285 1.285 13 C 0.162 3.838 14 H 0.055 0.945 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.141 4.141 18 C 0.091 3.909 19 H 0.057 0.943 20 O -0.544 6.544 21 H 0.031 0.969 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.025 0.975 28 H 0.243 0.757 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -9.100 -3.023 9.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.064 3.936 3 C -0.189 4.189 4 N -0.292 5.292 5 C -0.368 4.368 6 H 0.072 0.928 7 C -0.198 4.198 8 N -0.514 5.514 9 Si 0.729 3.271 10 H -0.208 1.208 11 H -0.228 1.228 12 H -0.212 1.212 13 C 0.054 3.946 14 H 0.073 0.927 15 C -0.163 4.163 16 C -0.151 4.151 17 C -0.179 4.179 18 C 0.030 3.970 19 H 0.074 0.926 20 O -0.347 6.347 21 H 0.051 0.949 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.612 -8.322 -3.239 8.950 hybrid contribution -0.660 0.525 0.947 1.268 sum -0.048 -7.796 -2.292 8.126 Atomic orbital electron populations 1.21866 0.97354 1.00106 0.99647 1.20495 0.92710 0.91926 0.88496 1.22237 1.00407 0.98607 0.97628 1.43723 1.48245 1.35810 1.01441 1.18725 1.32342 0.91859 0.93841 0.92756 1.25763 0.96172 1.00661 0.97202 1.70542 1.24255 1.09306 1.47339 0.86452 0.83323 0.77298 0.79992 1.20784 1.22775 1.21167 1.21356 0.89138 0.88357 0.95700 0.92674 1.22631 0.96697 0.97134 0.99790 1.22323 0.96503 0.95941 1.00365 1.22950 0.96069 1.00175 0.98675 1.22977 0.83116 0.96846 0.94105 0.92562 1.87092 1.30252 1.37639 1.79740 0.94940 0.93636 0.93058 0.93435 0.93706 0.94840 0.95658 0.94763 0.94305 0.92861 0.90207 0.92202 0.89986 0.92993 0.79352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 9.14 71.98 0.66 -4.87 16 2 C 0.17 7.68 3.36 44.99 0.15 7.83 16 3 C -0.13 -6.16 7.67 71.98 0.55 -5.61 16 4 N -0.57 -27.39 1.99 -650.25 -1.29 -28.69 16 5 C -0.24 -12.64 5.68 84.03 0.48 -12.16 16 6 H 0.06 3.08 6.03 -2.91 -0.02 3.06 16 7 C 0.00 0.14 3.59 84.86 0.30 0.45 16 8 N -0.87 -49.59 10.50 21.65 0.23 -49.36 16 9 Si 0.90 44.68 29.68 68.60 2.04 46.72 16 10 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 11 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 12 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 13 C 0.16 6.70 3.43 45.72 0.16 6.86 16 14 H 0.06 2.15 7.60 -2.38 -0.02 2.13 16 15 C -0.12 -5.12 6.41 31.67 0.20 -4.92 16 16 C -0.11 -3.60 6.91 31.88 0.22 -3.38 16 17 C -0.14 -4.37 6.56 31.70 0.21 -4.16 16 18 C 0.09 3.16 4.15 31.35 0.13 3.29 16 19 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 20 O -0.54 -20.89 9.65 -148.98 -1.44 -22.33 16 21 H 0.03 1.53 7.38 -2.39 -0.02 1.51 16 22 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 25 H 0.04 2.35 5.35 -2.38 -0.01 2.34 16 26 H 0.03 1.72 7.51 -2.39 -0.02 1.70 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 2.74 7.03 -2.39 -0.02 2.72 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.36 10.27 9.11 -74.06 -0.67 9.60 16 Total: -1.00 -60.75 269.16 2.98 -57.77 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.38 Total: 12.54 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 3.06 Total: -16.66 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.07 Total: -78.05 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.44 Total: -22.33 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.04 Total: 46.72 kcal Total: -60.75 2.98 -57.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252466573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.503 kcal (2) G-P(sol) polarization free energy of solvation -60.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds