Wall clock time and date at job start Mon Mar 30 2020 04:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.45385 * 2 1 4 4 C 1.53035 * 109.46389 * 119.97337 * 2 1 3 5 5 C 1.53120 * 109.28110 * 60.83129 * 4 2 1 6 6 O 1.42898 * 109.52496 * 297.69302 * 5 4 2 7 7 C 1.50702 * 109.52374 * 177.56146 * 5 4 2 8 8 H 1.07998 * 120.00251 * 0.12644 * 7 5 4 9 9 C 1.37875 * 119.99518 * 180.13060 * 7 5 4 10 10 N 1.31519 * 120.00715 * 359.72649 * 9 7 5 11 11 Si 1.86809 * 119.99640 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47284 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46982 * 120.00035 * 11 9 7 14 14 H 1.48499 * 109.46943 * 239.99826 * 11 9 7 15 15 C 1.53124 * 109.21073 * 57.62553 * 5 4 2 16 16 C 1.53042 * 109.27416 * 302.44255 * 15 5 4 17 17 H 1.08999 * 109.40971 * 299.06753 * 16 15 5 18 18 C 1.53005 * 109.46380 * 179.12896 * 16 15 5 19 19 N 1.46845 * 109.46260 * 240.02355 * 2 1 3 20 20 C 1.46901 * 110.99873 * 65.82392 * 19 2 1 21 21 H 1.09000 * 109.47376 * 290.34128 * 1 2 3 22 22 H 1.08999 * 109.47228 * 50.34641 * 1 2 3 23 23 H 1.08999 * 109.47488 * 170.34351 * 1 2 3 24 24 H 1.09004 * 109.50049 * 300.89740 * 4 2 1 25 25 H 1.09000 * 109.50648 * 180.77669 * 4 2 1 26 26 H 0.96704 * 113.99685 * 179.87324 * 6 5 4 27 27 H 0.96998 * 119.99934 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.49922 * 62.31817 * 15 5 4 29 29 H 1.08995 * 109.50603 * 182.43534 * 15 5 4 30 30 H 1.09000 * 109.47066 * 299.88518 * 18 16 15 31 31 H 1.09003 * 109.46868 * 59.87975 * 18 16 15 32 32 H 1.08997 * 109.46953 * 179.88390 * 18 16 15 33 33 H 1.08994 * 109.47080 * 60.00372 * 20 19 2 34 34 H 1.09007 * 109.47165 * 180.02562 * 20 19 2 35 35 H 1.09000 * 109.47089 * 299.99616 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 1.5442 -2.1695 1.2357 6 8 0.1160 -2.1861 1.2786 7 6 2.0926 -2.9013 2.4336 8 1 2.7293 -2.3851 3.1368 9 6 1.7814 -4.2297 2.6317 10 7 1.0016 -4.8570 1.7783 11 14 2.4617 -5.1370 4.1162 12 1 3.3017 -4.2125 4.9192 13 1 1.3381 -5.6356 4.9493 14 1 3.2866 -6.2844 3.6598 15 6 2.0255 -2.8542 -0.0466 16 6 1.5173 -2.0706 -1.2590 17 1 0.4274 -2.0608 -1.2531 18 6 2.0140 -2.7388 -2.5427 19 7 2.0192 -0.6918 -1.1993 20 6 1.6651 0.0505 -2.4165 21 1 -0.3634 0.3572 0.9636 22 1 -0.3633 0.6558 -0.7912 23 1 -0.3634 -1.0131 -0.1724 24 1 1.6637 -0.2163 2.1399 25 1 3.1298 -0.7092 1.2576 26 1 -0.2675 -3.0738 1.2703 27 1 0.7825 -5.7915 1.9180 28 1 3.1152 -2.8770 -0.0599 29 1 1.6392 -3.8727 -0.0824 30 1 3.1040 -2.7483 -2.5490 31 1 1.6416 -3.7622 -2.5870 32 1 1.6504 -2.1819 -3.4062 33 1 2.1121 1.0439 -2.3793 34 1 2.0390 -0.4840 -3.2898 35 1 0.5810 0.1421 -2.4837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259733201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:25 Heat of formation + Delta-G solvation = -48.336711 kcal Electronic energy + Delta-G solvation = -15887.653733 eV Core-core repulsion = 13499.526108 eV Total energy + Delta-G solvation = -2388.127625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19571 -35.36277 -32.53719 -31.90582 -30.72593 -27.97943 -25.96309 -25.40573 -24.14742 -21.22773 -19.98951 -17.68265 -16.80795 -15.24564 -15.06113 -14.90161 -14.15572 -13.68562 -13.36585 -12.69085 -12.66320 -12.34565 -11.78052 -11.67072 -11.32551 -11.19303 -11.05362 -10.95659 -10.82711 -10.42067 -10.27893 -10.16555 -10.00509 -9.92440 -9.48740 -8.88295 -8.46261 -7.86880 -7.49183 -6.10565 -4.20680 3.24668 3.33404 3.38054 4.36140 4.62437 5.13045 5.58692 5.64239 5.74122 5.85380 5.98936 6.03287 6.06292 6.15309 6.18500 6.28236 6.45428 6.54954 6.59525 6.70085 6.74664 6.78549 6.84713 7.10186 7.30643 7.37072 7.60823 7.72219 7.87216 7.92962 8.11634 8.28228 8.81974 9.47097 9.61287 10.91609 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043988 B = 0.010970 C = 0.009995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.384462 B = 2551.857802 C = 2800.599296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.086 3.914 3 H 0.060 0.940 4 C -0.089 4.089 5 C 0.251 3.749 6 O -0.584 6.584 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.123 4.123 16 C 0.077 3.923 17 H 0.043 0.957 18 C -0.144 4.144 19 N -0.532 5.532 20 C 0.020 3.980 21 H 0.053 0.947 22 H 0.024 0.976 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.373 0.627 27 H 0.264 0.736 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 4.852 -5.931 7.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.022 4.022 3 H 0.078 0.922 4 C -0.127 4.127 5 C 0.211 3.789 6 O -0.394 6.394 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.132 4.132 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.161 4.161 16 C -0.031 4.031 17 H 0.061 0.939 18 C -0.201 4.201 19 N -0.256 5.256 20 C -0.129 4.129 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.113 0.887 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.224 0.776 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.670 5.307 -5.914 7.974 hybrid contribution -0.530 -1.098 0.720 1.416 sum 0.140 4.209 -5.194 6.687 Atomic orbital electron populations 1.22585 0.97267 1.03847 1.00033 1.21612 0.93397 0.96268 0.90942 0.92213 1.21582 0.99645 0.96792 0.94681 1.18600 0.78896 0.89718 0.91648 1.86208 1.22160 1.34165 1.96827 1.21826 1.30216 0.95599 1.09192 0.92374 1.24980 0.94599 0.97283 0.96337 1.69603 1.37102 1.11407 1.36000 0.86475 0.78801 0.79565 0.82748 1.19791 1.20990 1.20993 1.22239 0.99841 1.00957 0.93073 1.21769 0.97331 0.87662 0.96340 0.93876 1.21925 1.01509 0.99887 0.96819 1.62242 1.59513 1.02445 1.01448 1.22395 0.98235 0.98269 0.93971 0.92839 0.95661 0.88689 0.92607 0.91817 0.77647 0.92550 0.93325 0.88793 0.92546 0.92639 0.93750 0.92560 0.91729 0.96138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 7.30 37.16 0.27 -3.15 16 2 C 0.09 1.67 2.93 -67.73 -0.20 1.47 16 3 H 0.06 1.07 8.12 -51.93 -0.42 0.64 16 4 C -0.09 -1.96 4.69 -26.65 -0.12 -2.09 16 5 C 0.25 6.13 0.67 -91.65 -0.06 6.06 16 6 O -0.58 -14.53 9.01 -35.23 -0.32 -14.85 16 7 C -0.53 -14.28 8.25 -34.44 -0.28 -14.56 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 10 N -0.90 -23.84 9.73 55.43 0.54 -23.31 16 11 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C -0.12 -2.85 4.11 -26.65 -0.11 -2.96 16 16 C 0.08 1.52 2.09 -67.71 -0.14 1.38 16 17 H 0.04 0.92 5.81 -51.93 -0.30 0.61 16 18 C -0.14 -2.45 8.77 37.16 0.33 -2.12 16 19 N -0.53 -9.99 4.69 -226.94 -1.07 -11.06 16 20 C 0.02 0.31 8.91 60.07 0.54 0.84 16 21 H 0.05 1.04 8.12 -51.93 -0.42 0.61 16 22 H 0.02 0.42 7.03 -51.93 -0.37 0.06 16 23 H 0.09 2.01 3.71 -51.93 -0.19 1.82 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.37 9.68 7.14 45.56 0.33 10.01 16 27 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.66 6.23 -51.93 -0.32 0.34 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.92 5.96 -51.92 -0.31 0.61 16 35 H 0.02 0.31 6.68 -51.93 -0.35 -0.03 16 LS Contribution 257.11 15.07 3.87 3.87 Total: -1.00 -26.38 257.11 -6.63 -33.01 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.76 Total: 9.87 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 0.12 Total: -13.40 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.53 Total: -34.36 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.32 Total: -14.85 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.38 -6.63 -33.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.327 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds