Wall clock time and date at job start Mon Mar 30 2020 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.45385 * 2 1 4 4 C 1.53035 * 109.46389 * 119.97337 * 2 1 3 5 5 C 1.53120 * 109.28110 * 60.83129 * 4 2 1 6 6 O 1.42898 * 109.52496 * 297.69302 * 5 4 2 7 7 C 1.50702 * 109.52374 * 177.56146 * 5 4 2 8 8 H 1.07998 * 120.00251 * 0.12644 * 7 5 4 9 9 C 1.37875 * 119.99518 * 180.13060 * 7 5 4 10 10 N 1.31519 * 120.00715 * 359.72649 * 9 7 5 11 11 Si 1.86809 * 119.99640 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47284 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46982 * 120.00035 * 11 9 7 14 14 H 1.48499 * 109.46943 * 239.99826 * 11 9 7 15 15 C 1.53124 * 109.21073 * 57.62553 * 5 4 2 16 16 C 1.53042 * 109.27416 * 302.44255 * 15 5 4 17 17 H 1.08999 * 109.40971 * 299.06753 * 16 15 5 18 18 C 1.53005 * 109.46380 * 179.12896 * 16 15 5 19 19 N 1.46845 * 109.46260 * 240.02355 * 2 1 3 20 20 C 1.46901 * 110.99873 * 65.82392 * 19 2 1 21 21 H 1.09000 * 109.47376 * 290.34128 * 1 2 3 22 22 H 1.08999 * 109.47228 * 50.34641 * 1 2 3 23 23 H 1.08999 * 109.47488 * 170.34351 * 1 2 3 24 24 H 1.09004 * 109.50049 * 300.89740 * 4 2 1 25 25 H 1.09000 * 109.50648 * 180.77669 * 4 2 1 26 26 H 0.96704 * 113.99685 * 179.87324 * 6 5 4 27 27 H 0.96998 * 119.99934 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.49922 * 62.31817 * 15 5 4 29 29 H 1.08995 * 109.50603 * 182.43534 * 15 5 4 30 30 H 1.09000 * 109.47066 * 299.88518 * 18 16 15 31 31 H 1.09003 * 109.46868 * 59.87975 * 18 16 15 32 32 H 1.08997 * 109.46953 * 179.88390 * 18 16 15 33 33 H 1.08994 * 109.47080 * 60.00372 * 20 19 2 34 34 H 1.09007 * 109.47165 * 180.02562 * 20 19 2 35 35 H 1.09000 * 109.47089 * 299.99616 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 1.5442 -2.1695 1.2357 6 8 0.1160 -2.1861 1.2786 7 6 2.0926 -2.9013 2.4336 8 1 2.7293 -2.3851 3.1368 9 6 1.7814 -4.2297 2.6317 10 7 1.0016 -4.8570 1.7783 11 14 2.4617 -5.1370 4.1162 12 1 3.3017 -4.2125 4.9192 13 1 1.3381 -5.6356 4.9493 14 1 3.2866 -6.2844 3.6598 15 6 2.0255 -2.8542 -0.0466 16 6 1.5173 -2.0706 -1.2590 17 1 0.4274 -2.0608 -1.2531 18 6 2.0140 -2.7388 -2.5427 19 7 2.0192 -0.6918 -1.1993 20 6 1.6651 0.0505 -2.4165 21 1 -0.3634 0.3572 0.9636 22 1 -0.3633 0.6558 -0.7912 23 1 -0.3634 -1.0131 -0.1724 24 1 1.6637 -0.2163 2.1399 25 1 3.1298 -0.7092 1.2576 26 1 -0.2675 -3.0738 1.2703 27 1 0.7825 -5.7915 1.9180 28 1 3.1152 -2.8770 -0.0599 29 1 1.6392 -3.8727 -0.0824 30 1 3.1040 -2.7483 -2.5490 31 1 1.6416 -3.7622 -2.5870 32 1 1.6504 -2.1819 -3.4062 33 1 2.1121 1.0439 -2.3793 34 1 2.0390 -0.4840 -3.2898 35 1 0.5810 0.1421 -2.4837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259733201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:24 Heat of formation + Delta-G solvation = -66.266782 kcal Electronic energy + Delta-G solvation = -15888.431239 eV Core-core repulsion = 13499.526108 eV Total energy + Delta-G solvation = -2388.905131 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84194 -37.16096 -34.29065 -33.75831 -32.46311 -29.59381 -27.56302 -27.13653 -25.78398 -22.87748 -21.71261 -19.40566 -18.75924 -17.03122 -16.87229 -16.42354 -15.94601 -15.31606 -14.87254 -14.44678 -14.32468 -14.09690 -13.34896 -13.16732 -12.91425 -12.87838 -12.70818 -12.63309 -12.43612 -12.15083 -12.05245 -12.02738 -11.78742 -11.60772 -11.19557 -10.74248 -10.42581 -9.78300 -8.99045 -8.12194 -6.30549 1.37967 1.41691 1.51686 2.40537 3.06220 3.17681 4.03472 4.18259 4.23250 4.33186 4.43723 4.57015 4.60389 4.69421 4.74763 4.89172 4.91695 4.93782 5.10481 5.11125 5.16425 5.18722 5.28580 5.35045 5.52297 5.59437 5.75732 5.85414 6.06473 6.25485 6.41117 6.46855 6.75327 7.40217 7.55904 8.86961 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043988 B = 0.010970 C = 0.009995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.384462 B = 2551.857802 C = 2800.599296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 H 0.083 0.917 4 C -0.088 4.088 5 C 0.241 3.759 6 O -0.583 6.583 7 C -0.560 4.560 8 H 0.045 0.955 9 C 0.031 3.969 10 N -0.910 5.910 11 Si 0.952 3.048 12 H -0.275 1.275 13 H -0.280 1.280 14 H -0.279 1.279 15 C -0.112 4.112 16 C 0.083 3.917 17 H 0.031 0.969 18 C -0.137 4.137 19 N -0.539 5.539 20 C 0.019 3.981 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.365 0.635 27 H 0.267 0.733 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 5.614 -7.002 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 H 0.101 0.899 4 C -0.126 4.126 5 C 0.202 3.798 6 O -0.391 6.391 7 C -0.599 4.599 8 H 0.063 0.937 9 C -0.169 4.169 10 N -0.551 5.551 11 Si 0.779 3.221 12 H -0.200 1.200 13 H -0.206 1.206 14 H -0.204 1.204 15 C -0.151 4.151 16 C -0.025 4.025 17 H 0.049 0.951 18 C -0.194 4.194 19 N -0.264 5.264 20 C -0.128 4.128 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.214 0.786 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.848 6.080 -6.997 9.308 hybrid contribution -0.588 -1.323 1.063 1.797 sum 0.260 4.757 -5.934 7.609 Atomic orbital electron populations 1.22447 0.97062 1.02945 1.00431 1.21578 0.93456 0.96945 0.90013 0.89883 1.21530 0.99244 0.95613 0.96230 1.18744 0.78463 0.91171 0.91421 1.86234 1.22554 1.33357 1.96918 1.22112 1.30936 0.96491 1.10313 0.93671 1.25601 0.94855 0.97832 0.98582 1.69693 1.37122 1.11575 1.36726 0.85602 0.78215 0.78367 0.79930 1.19979 1.20571 1.20425 1.22004 0.98403 1.00157 0.94513 1.21602 0.96454 0.88467 0.96019 0.95118 1.21857 1.01462 0.99948 0.96175 1.62203 1.59588 1.02049 1.02580 1.22499 0.98726 0.98972 0.92640 0.93722 0.93143 0.90893 0.93352 0.92341 0.78637 0.92338 0.95036 0.91292 0.92524 0.92772 0.91031 0.90667 0.90196 0.95784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.24 7.30 71.98 0.53 -5.72 16 2 C 0.09 3.26 2.93 44.94 0.13 3.40 16 3 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 4 C -0.09 -3.88 4.69 30.65 0.14 -3.74 16 5 C 0.24 11.98 0.67 -11.46 -0.01 11.97 16 6 O -0.58 -29.49 9.01 -148.98 -1.34 -30.84 16 7 C -0.56 -30.83 8.25 25.60 0.21 -30.62 16 8 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 9 C 0.03 1.65 5.22 84.65 0.44 2.09 16 10 N -0.91 -48.83 9.73 21.45 0.21 -48.62 16 11 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 C -0.11 -5.28 4.11 30.65 0.13 -5.16 16 16 C 0.08 3.20 2.09 44.94 0.09 3.29 16 17 H 0.03 1.28 5.81 -2.39 -0.01 1.27 16 18 C -0.14 -4.38 8.77 71.98 0.63 -3.75 16 19 N -0.54 -19.06 4.69 -871.90 -4.09 -23.15 16 20 C 0.02 0.53 8.91 127.69 1.14 1.66 16 21 H 0.04 1.68 8.12 -2.39 -0.02 1.66 16 22 H 0.05 1.57 7.03 -2.39 -0.02 1.55 16 23 H 0.07 3.03 3.71 -2.39 -0.01 3.02 16 24 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.36 19.44 7.14 -74.05 -0.53 18.91 16 27 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 28 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 3.57 6.17 -2.39 -0.01 3.55 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.90 6.23 -2.39 -0.01 1.88 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.94 5.96 -2.38 -0.01 1.93 16 35 H 0.02 0.64 6.68 -2.39 -0.02 0.63 16 Total: -1.00 -55.94 257.11 0.78 -55.16 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.54 Total: 28.88 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 3.44 Total: -26.57 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -3.88 Total: -71.77 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.34 Total: -30.84 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -55.94 0.78 -55.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.103 kcal (2) G-P(sol) polarization free energy of solvation -55.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds