Wall clock time and date at job start Mon Mar 30 2020 04:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45956 * 2 1 4 4 C 1.53032 * 109.45713 * 240.02571 * 2 1 3 5 5 C 1.53114 * 109.28141 * 180.80789 * 4 2 1 6 6 O 1.42895 * 109.52571 * 177.55514 * 5 4 2 7 7 C 1.50703 * 109.52264 * 297.68605 * 5 4 2 8 8 H 1.07996 * 119.99721 * 0.02562 * 7 5 4 9 9 C 1.37876 * 120.00014 * 179.97438 * 7 5 4 10 10 N 1.31519 * 120.00094 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00104 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47056 * 90.00164 * 11 9 7 13 13 H 1.48497 * 109.47124 * 210.00015 * 11 9 7 14 14 H 1.48495 * 109.46942 * 330.00271 * 11 9 7 15 15 C 1.53123 * 109.16198 * 57.65126 * 5 4 2 16 16 C 1.53035 * 109.27774 * 302.35270 * 15 5 4 17 17 H 1.09008 * 109.45841 * 299.15478 * 16 15 5 18 18 C 1.53006 * 109.46431 * 179.19276 * 16 15 5 19 19 N 1.46844 * 109.46200 * 119.97379 * 2 1 3 20 20 C 1.46904 * 111.00328 * 305.84791 * 19 2 1 21 21 H 1.09003 * 109.47565 * 300.02235 * 1 2 3 22 22 H 1.08998 * 109.47220 * 60.02992 * 1 2 3 23 23 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.50025 * 300.75082 * 4 2 1 25 25 H 1.08996 * 109.50621 * 60.86503 * 4 2 1 26 26 H 0.96699 * 114.00053 * 179.97438 * 6 5 4 27 27 H 0.96995 * 120.00177 * 179.97438 * 10 9 7 28 28 H 1.08995 * 109.51026 * 182.40543 * 15 5 4 29 29 H 1.09011 * 109.49940 * 62.28508 * 15 5 4 30 30 H 1.08995 * 109.46828 * 299.94676 * 18 16 15 31 31 H 1.09002 * 109.46726 * 59.93969 * 18 16 15 32 32 H 1.08992 * 109.47393 * 179.97438 * 18 16 15 33 33 H 1.09005 * 109.47069 * 295.79201 * 20 19 2 34 34 H 1.09002 * 109.46841 * 55.78558 * 20 19 2 35 35 H 1.08997 * 109.47281 * 175.79311 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2499 5 6 3.5707 -0.7362 -1.2357 6 8 4.0517 -1.4577 -2.3715 7 6 4.0890 0.6782 -1.2811 8 1 3.3964 1.5061 -1.3161 9 6 5.4472 0.9152 -1.2768 10 7 6.2905 -0.0931 -1.2326 11 14 6.0896 2.6683 -1.3337 12 1 6.2467 3.1831 0.0504 13 1 7.4049 2.6914 -2.0226 14 1 5.1279 3.5240 -2.0739 15 6 4.0546 -1.4190 0.0466 16 6 3.4864 -0.6778 1.2590 17 1 3.8404 0.3531 1.2530 18 6 3.9510 -1.3687 2.5427 19 7 2.0192 -0.6917 1.1994 20 6 1.4374 -0.1105 2.4166 21 1 -0.3634 0.5142 0.8898 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6656 -1.7446 -1.2575 25 1 1.6893 -0.1982 -2.1399 26 1 5.0158 -1.5072 -2.4267 27 1 7.2460 0.0736 -1.2300 28 1 5.1437 -1.3950 0.0830 29 1 3.7121 -2.4538 0.0594 30 1 3.5969 -2.3995 2.5491 31 1 5.0401 -1.3585 2.5870 32 1 3.5468 -0.8407 3.4062 33 1 1.7731 0.9211 2.5230 34 1 0.3499 -0.1332 2.3461 35 1 1.7575 -0.6879 3.2839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259733204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:27 Heat of formation + Delta-G solvation = -54.422782 kcal Electronic energy + Delta-G solvation = -15820.289854 eV Core-core repulsion = 13431.898317 eV Total energy + Delta-G solvation = -2388.391537 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.89616 -35.47139 -32.85296 -32.01447 -30.82117 -27.82854 -25.76776 -25.35133 -24.50421 -20.33423 -20.03342 -18.72174 -16.42620 -15.17978 -15.10536 -14.85964 -14.21330 -13.75604 -13.56256 -12.79869 -12.52833 -12.14408 -11.94909 -11.56802 -11.41915 -11.24627 -11.01074 -10.96955 -10.78704 -10.57963 -10.55197 -10.17540 -10.01877 -9.79471 -9.54127 -8.90857 -8.53172 -7.92983 -7.49807 -6.12767 -4.22388 3.21832 3.29877 3.33518 4.33011 4.62902 5.10327 5.52746 5.63133 5.70645 5.82009 5.96547 6.02726 6.05649 6.12537 6.23669 6.31627 6.37827 6.50074 6.57498 6.65995 6.66619 6.82045 6.89337 7.06427 7.20066 7.35185 7.40659 7.61920 7.88714 7.97019 8.13062 8.28941 8.79214 9.44885 9.62564 10.89943 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.012818 C = 0.012327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.281476 B = 2183.872217 C = 2270.800825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.092 3.908 3 H 0.047 0.953 4 C -0.087 4.087 5 C 0.246 3.754 6 O -0.595 6.595 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C -0.124 4.124 16 C 0.095 3.905 17 H 0.049 0.951 18 C -0.143 4.143 19 N -0.535 5.535 20 C 0.019 3.981 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.379 0.621 27 H 0.266 0.734 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.016 0.984 34 H 0.062 0.938 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 -0.105 5.426 7.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 H 0.065 0.935 4 C -0.125 4.125 5 C 0.207 3.793 6 O -0.404 6.404 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.162 4.162 16 C -0.012 4.012 17 H 0.067 0.933 18 C -0.201 4.201 19 N -0.261 5.261 20 C -0.130 4.130 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.229 0.771 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.283 -0.687 5.273 8.231 hybrid contribution 1.335 1.951 0.242 2.376 sum -4.948 1.264 5.515 7.516 Atomic orbital electron populations 1.21951 0.95926 1.01725 1.00743 1.21459 0.93205 0.96548 0.90408 0.93464 1.21401 0.97063 0.98835 0.95174 1.18685 0.88564 0.89470 0.82627 1.86098 1.27782 1.77757 1.48725 1.21757 0.91771 0.92922 1.50053 0.92531 1.24969 0.96881 0.97193 0.94127 1.69581 1.02763 1.30202 1.51347 0.86588 0.78370 0.84927 0.78102 1.20723 1.21042 1.19893 1.22183 1.03026 0.96226 0.94791 1.21493 0.85396 0.99142 0.95201 0.93262 1.21917 1.00592 1.00579 0.96991 1.62057 1.08403 1.54351 1.01321 1.22446 0.99674 0.97012 0.93841 0.93171 0.92731 0.92380 0.93207 0.92685 0.77063 0.92423 0.88671 0.95005 0.92771 0.92650 0.93728 0.96503 0.91903 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.77 37.16 0.33 -1.99 16 2 C 0.09 1.82 2.23 -67.73 -0.15 1.67 16 3 H 0.05 1.03 6.78 -51.93 -0.35 0.68 16 4 C -0.09 -1.95 4.49 -26.66 -0.12 -2.07 16 5 C 0.25 6.22 0.85 -91.65 -0.08 6.14 16 6 O -0.59 -16.02 12.97 -35.23 -0.46 -16.48 16 7 C -0.53 -14.05 6.43 -34.44 -0.22 -14.28 16 8 H 0.06 1.53 6.87 -52.49 -0.36 1.16 16 9 C 0.07 1.83 5.22 -17.82 -0.09 1.73 16 10 N -0.90 -23.88 9.69 55.43 0.54 -23.34 16 11 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 C -0.12 -2.95 4.32 -26.65 -0.12 -3.07 16 16 C 0.10 2.02 2.24 -67.72 -0.15 1.87 16 17 H 0.05 1.17 7.31 -51.92 -0.38 0.79 16 18 C -0.14 -2.56 8.77 37.16 0.33 -2.23 16 19 N -0.54 -10.38 4.58 -226.94 -1.04 -11.42 16 20 C 0.02 0.30 8.64 60.07 0.52 0.82 16 21 H 0.05 0.71 6.23 -51.93 -0.32 0.39 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.38 10.27 7.14 45.56 0.33 10.60 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.10 2.46 6.05 -51.93 -0.31 2.14 16 29 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.70 6.32 -51.93 -0.33 0.37 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.89 5.96 -51.93 -0.31 0.58 16 35 H 0.06 0.93 6.21 -51.93 -0.32 0.61 16 LS Contribution 262.37 15.07 3.95 3.95 Total: -1.00 -27.21 262.37 -6.67 -33.87 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.88 Total: 9.03 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 0.24 Total: -11.40 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.50 Total: -34.76 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.46 Total: -16.48 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.21 -6.67 -33.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.549 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds