Wall clock time and date at job start Mon Mar 30 2020 04:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.45956 * 2 1 4 4 C 1.53032 * 109.45713 * 240.02571 * 2 1 3 5 5 C 1.53114 * 109.28141 * 180.80789 * 4 2 1 6 6 O 1.42895 * 109.52571 * 177.55514 * 5 4 2 7 7 C 1.50703 * 109.52264 * 297.68605 * 5 4 2 8 8 H 1.07996 * 119.99721 * 0.02562 * 7 5 4 9 9 C 1.37876 * 120.00014 * 179.97438 * 7 5 4 10 10 N 1.31519 * 120.00094 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00104 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47056 * 90.00164 * 11 9 7 13 13 H 1.48497 * 109.47124 * 210.00015 * 11 9 7 14 14 H 1.48495 * 109.46942 * 330.00271 * 11 9 7 15 15 C 1.53123 * 109.16198 * 57.65126 * 5 4 2 16 16 C 1.53035 * 109.27774 * 302.35270 * 15 5 4 17 17 H 1.09008 * 109.45841 * 299.15478 * 16 15 5 18 18 C 1.53006 * 109.46431 * 179.19276 * 16 15 5 19 19 N 1.46844 * 109.46200 * 119.97379 * 2 1 3 20 20 C 1.46904 * 111.00328 * 305.84791 * 19 2 1 21 21 H 1.09003 * 109.47565 * 300.02235 * 1 2 3 22 22 H 1.08998 * 109.47220 * 60.02992 * 1 2 3 23 23 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.50025 * 300.75082 * 4 2 1 25 25 H 1.08996 * 109.50621 * 60.86503 * 4 2 1 26 26 H 0.96699 * 114.00053 * 179.97438 * 6 5 4 27 27 H 0.96995 * 120.00177 * 179.97438 * 10 9 7 28 28 H 1.08995 * 109.51026 * 182.40543 * 15 5 4 29 29 H 1.09011 * 109.49940 * 62.28508 * 15 5 4 30 30 H 1.08995 * 109.46828 * 299.94676 * 18 16 15 31 31 H 1.09002 * 109.46726 * 59.93969 * 18 16 15 32 32 H 1.08992 * 109.47393 * 179.97438 * 18 16 15 33 33 H 1.09005 * 109.47069 * 295.79201 * 20 19 2 34 34 H 1.09002 * 109.46841 * 55.78558 * 20 19 2 35 35 H 1.08997 * 109.47281 * 175.79311 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2499 5 6 3.5707 -0.7362 -1.2357 6 8 4.0517 -1.4577 -2.3715 7 6 4.0890 0.6782 -1.2811 8 1 3.3964 1.5061 -1.3161 9 6 5.4472 0.9152 -1.2768 10 7 6.2905 -0.0931 -1.2326 11 14 6.0896 2.6683 -1.3337 12 1 6.2467 3.1831 0.0504 13 1 7.4049 2.6914 -2.0226 14 1 5.1279 3.5240 -2.0739 15 6 4.0546 -1.4190 0.0466 16 6 3.4864 -0.6778 1.2590 17 1 3.8404 0.3531 1.2530 18 6 3.9510 -1.3687 2.5427 19 7 2.0192 -0.6917 1.1994 20 6 1.4374 -0.1105 2.4166 21 1 -0.3634 0.5142 0.8898 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6656 -1.7446 -1.2575 25 1 1.6893 -0.1982 -2.1399 26 1 5.0158 -1.5072 -2.4267 27 1 7.2460 0.0736 -1.2300 28 1 5.1437 -1.3950 0.0830 29 1 3.7121 -2.4538 0.0594 30 1 3.5969 -2.3995 2.5491 31 1 5.0401 -1.3585 2.5870 32 1 3.5468 -0.8407 3.4062 33 1 1.7731 0.9211 2.5230 34 1 0.3499 -0.1332 2.3461 35 1 1.7575 -0.6879 3.2839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259733204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:27 Heat of formation + Delta-G solvation = -73.731303 kcal Electronic energy + Delta-G solvation = -15821.127134 eV Core-core repulsion = 13431.898317 eV Total energy + Delta-G solvation = -2389.228817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58998 -37.35845 -34.47265 -34.03563 -32.60852 -29.33196 -27.50646 -27.03962 -26.20826 -21.94120 -21.77147 -20.55307 -18.41669 -17.14723 -16.70103 -16.58253 -15.98189 -15.38282 -15.29350 -14.42510 -14.22717 -13.65948 -13.48264 -13.40083 -13.09792 -12.86716 -12.71730 -12.42771 -12.38199 -12.34883 -12.28398 -12.06047 -11.82630 -11.49926 -11.24734 -10.79870 -10.55875 -9.95647 -9.07277 -8.15300 -6.31563 1.35143 1.38479 1.46886 2.37143 3.05217 3.12373 3.88774 4.14297 4.24069 4.25552 4.50226 4.61184 4.66064 4.69322 4.77756 4.79839 4.91264 4.93076 5.00523 5.10663 5.13233 5.22843 5.25425 5.36147 5.40761 5.49138 5.57609 5.62555 5.98490 6.25145 6.39623 6.45825 6.72619 7.37136 7.50142 8.85846 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.012818 C = 0.012327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.281476 B = 2183.872217 C = 2270.800825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.094 3.906 3 H 0.024 0.976 4 C -0.084 4.084 5 C 0.229 3.771 6 O -0.607 6.607 7 C -0.542 4.542 8 H 0.046 0.954 9 C 0.031 3.969 10 N -0.911 5.911 11 Si 0.948 3.052 12 H -0.276 1.276 13 H -0.280 1.280 14 H -0.275 1.275 15 C -0.115 4.115 16 C 0.100 3.900 17 H 0.018 0.982 18 C -0.135 4.135 19 N -0.538 5.538 20 C 0.017 3.983 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.374 0.626 27 H 0.268 0.732 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.014 0.986 34 H 0.086 0.914 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 0.349 6.804 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.014 4.014 3 H 0.042 0.958 4 C -0.122 4.122 5 C 0.190 3.810 6 O -0.416 6.416 7 C -0.580 4.580 8 H 0.064 0.936 9 C -0.169 4.169 10 N -0.552 5.552 11 Si 0.774 3.226 12 H -0.202 1.202 13 H -0.205 1.205 14 H -0.200 1.200 15 C -0.153 4.153 16 C -0.009 4.009 17 H 0.036 0.964 18 C -0.192 4.192 19 N -0.264 5.264 20 C -0.130 4.130 21 H 0.091 0.909 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.032 0.968 34 H 0.105 0.895 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.424 -0.235 6.662 9.978 hybrid contribution 1.689 1.787 -0.216 2.469 sum -5.736 1.552 6.446 8.767 Atomic orbital electron populations 1.21878 0.92447 1.02687 1.02391 1.21420 0.95858 0.94621 0.89521 0.95824 1.21391 0.95121 0.99072 0.96633 1.19021 0.90370 0.88994 0.82647 1.86093 1.27366 1.78127 1.49981 1.21845 0.92059 0.93271 1.50795 0.93565 1.25588 0.97034 1.00455 0.93818 1.69675 1.02898 1.31487 1.51162 0.85715 0.77744 0.80981 0.78138 1.20206 1.20530 1.20037 1.22007 1.01564 0.96100 0.95667 1.21337 0.86821 0.97215 0.95499 0.96363 1.21835 1.00426 1.00940 0.96043 1.62062 1.07054 1.54739 1.02554 1.22576 1.00964 0.96893 0.92595 0.90868 0.91852 0.91679 0.93272 0.93441 0.77686 0.92272 0.91080 0.95503 0.91949 0.93090 0.91181 0.96780 0.89506 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.77 71.98 0.63 -3.33 16 2 C 0.09 3.64 2.23 44.94 0.10 3.74 16 3 H 0.02 1.03 6.78 -2.39 -0.02 1.01 16 4 C -0.08 -3.79 4.49 30.64 0.14 -3.65 16 5 C 0.23 11.78 0.85 -11.46 -0.01 11.77 16 6 O -0.61 -33.56 12.97 -148.98 -1.93 -35.49 16 7 C -0.54 -29.43 6.43 25.60 0.16 -29.26 16 8 H 0.05 2.55 6.87 -2.91 -0.02 2.53 16 9 C 0.03 1.63 5.22 84.65 0.44 2.07 16 10 N -0.91 -49.19 9.69 21.45 0.21 -48.99 16 11 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 C -0.11 -5.55 4.32 30.65 0.13 -5.42 16 16 C 0.10 4.16 2.24 44.94 0.10 4.26 16 17 H 0.02 0.88 7.31 -2.38 -0.02 0.86 16 18 C -0.13 -4.58 8.77 71.98 0.63 -3.94 16 19 N -0.54 -19.90 4.58 -871.91 -3.99 -23.90 16 20 C 0.02 0.50 8.64 127.69 1.10 1.60 16 21 H 0.07 1.79 6.23 -2.39 -0.01 1.77 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.37 20.93 7.14 -74.06 -0.53 20.40 16 27 H 0.27 13.78 8.31 -92.71 -0.77 13.00 16 28 H 0.07 3.76 6.05 -2.39 -0.01 3.75 16 29 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.00 6.32 -2.39 -0.02 1.99 16 33 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.09 2.09 5.96 -2.39 -0.01 2.07 16 35 H 0.08 2.05 6.21 -2.39 -0.01 2.03 16 Total: -1.00 -58.27 262.37 0.28 -57.99 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.54 Total: 27.66 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.43 Total: -22.17 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -3.79 Total: -72.89 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.93 Total: -35.49 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -58.27 0.28 -57.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.737 kcal (2) G-P(sol) polarization free energy of solvation -58.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds