Wall clock time and date at job start Mon Mar 30 2020 04:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.45971 * 2 1 4 4 C 1.53037 * 109.46215 * 240.02506 * 2 1 3 5 5 C 1.53120 * 109.27494 * 180.81246 * 4 2 1 6 6 O 1.42899 * 109.52656 * 297.68309 * 5 4 2 7 7 C 1.50704 * 109.51979 * 177.56038 * 5 4 2 8 8 H 1.07998 * 119.99766 * 244.66968 * 7 5 4 9 9 C 1.37880 * 120.00281 * 64.66647 * 7 5 4 10 10 N 1.31516 * 119.99587 * 5.84826 * 9 7 5 11 11 Si 1.86798 * 119.99926 * 185.85346 * 9 7 5 12 12 H 1.48501 * 109.47114 * 90.00077 * 11 9 7 13 13 H 1.48495 * 109.47376 * 329.99923 * 11 9 7 14 14 H 1.48507 * 109.46897 * 209.99848 * 11 9 7 15 15 C 1.53112 * 109.21350 * 57.62270 * 5 4 2 16 16 C 1.53039 * 109.27879 * 302.43625 * 15 5 4 17 17 H 1.08998 * 109.46972 * 179.13093 * 16 15 5 18 18 C 1.53005 * 109.40077 * 299.07790 * 16 15 5 19 19 N 1.46843 * 109.45670 * 119.97073 * 2 1 3 20 20 C 1.46900 * 111.00396 * 305.85652 * 19 2 1 21 21 H 1.09002 * 109.46871 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47184 * 299.97152 * 1 2 3 23 23 H 1.08992 * 109.47408 * 59.97628 * 1 2 3 24 24 H 1.09003 * 109.50460 * 60.87202 * 4 2 1 25 25 H 1.08993 * 109.50092 * 300.75343 * 4 2 1 26 26 H 0.96689 * 114.00339 * 185.26286 * 6 5 4 27 27 H 0.96999 * 120.00418 * 1.99647 * 10 9 7 28 28 H 1.09004 * 109.50582 * 62.31794 * 15 5 4 29 29 H 1.09001 * 109.50270 * 182.43273 * 15 5 4 30 30 H 1.09002 * 109.46579 * 189.82562 * 18 16 15 31 31 H 1.08997 * 109.47134 * 309.82446 * 18 16 15 32 32 H 1.08999 * 109.46905 * 69.82716 * 18 16 15 33 33 H 1.09000 * 109.47233 * 59.99545 * 20 19 2 34 34 H 1.08998 * 109.47222 * 179.97438 * 20 19 2 35 35 H 1.09004 * 109.46561 * 299.99450 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7362 -1.2354 6 8 4.0624 0.6049 -1.2783 7 6 4.0783 -1.4970 -2.4333 8 1 4.6255 -2.4179 -2.2959 9 6 3.8440 -1.0174 -3.7045 10 7 3.2800 0.1591 -3.8698 11 14 4.3275 -2.0387 -5.1920 12 1 3.1928 -2.9140 -5.5814 13 1 5.5061 -2.8768 -4.8551 14 1 4.6678 -1.1373 -6.3220 15 6 4.0559 -1.4181 0.0469 16 6 3.4864 -0.6779 1.2592 17 1 3.8172 -1.1701 2.1738 18 6 3.9832 0.7693 1.2507 19 7 2.0191 -0.6917 1.1994 20 6 1.4371 -0.1105 2.4166 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8897 24 1 1.6896 -0.1981 -2.1400 25 1 1.6658 -1.7446 -1.2576 26 1 5.0243 0.6692 -1.3529 27 1 3.0553 0.7020 -3.0980 28 1 3.7145 -2.4532 0.0602 29 1 5.1450 -1.3931 0.0828 30 1 3.7256 1.2473 2.1958 31 1 5.0653 0.7811 1.1205 32 1 3.5125 1.3101 0.4297 33 1 0.3515 -0.2010 2.3792 34 1 1.8158 -0.6416 3.2898 35 1 1.7119 0.9422 2.4837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259733207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:29 Heat of formation + Delta-G solvation = -70.415149 kcal Electronic energy + Delta-G solvation = -15932.735322 eV Core-core repulsion = 13543.650305 eV Total energy + Delta-G solvation = -2389.085018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05105 -37.44040 -34.55168 -33.66955 -32.55018 -29.55879 -27.64735 -26.96980 -25.74225 -22.83698 -21.99587 -19.79464 -19.24021 -16.99696 -16.60866 -16.49341 -15.66522 -15.56090 -15.25059 -14.76484 -14.50118 -13.66841 -13.49946 -13.28869 -13.13924 -12.87540 -12.77430 -12.68803 -12.45172 -12.08410 -12.05358 -11.94314 -11.73503 -11.66228 -11.46464 -10.71726 -10.43188 -9.73730 -9.09269 -8.37759 -6.30523 1.53579 1.60063 1.77997 2.59413 3.04121 3.24881 3.85677 4.00855 4.11006 4.17222 4.29415 4.42133 4.50629 4.57833 4.66473 4.74385 4.76726 4.84005 4.94288 4.98870 5.04309 5.07635 5.15651 5.23909 5.37693 5.43113 5.67430 5.79922 6.01070 6.23718 6.30481 6.38140 6.76258 7.25726 7.61582 8.92786 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043798 B = 0.010979 C = 0.010066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.141493 B = 2549.794639 C = 2781.019122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.084 3.916 3 H 0.033 0.967 4 C -0.078 4.078 5 C 0.231 3.769 6 O -0.574 6.574 7 C -0.654 4.654 8 H 0.037 0.963 9 C -0.007 4.007 10 N -0.924 5.924 11 Si 1.105 2.895 12 H -0.279 1.279 13 H -0.276 1.276 14 H -0.286 1.286 15 C -0.116 4.116 16 C 0.088 3.912 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.539 5.539 20 C 0.021 3.979 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.358 0.642 27 H 0.283 0.717 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 -0.239 10.074 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 H 0.051 0.949 4 C -0.117 4.117 5 C 0.193 3.807 6 O -0.379 6.379 7 C -0.692 4.692 8 H 0.055 0.945 9 C -0.210 4.210 10 N -0.562 5.562 11 Si 0.929 3.071 12 H -0.205 1.205 13 H -0.201 1.201 14 H -0.212 1.212 15 C -0.154 4.154 16 C -0.020 4.020 17 H 0.101 0.899 18 C -0.236 4.236 19 N -0.264 5.264 20 C -0.126 4.126 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.204 0.796 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.814 -0.612 8.484 8.960 hybrid contribution 1.019 0.611 1.339 1.790 sum -1.795 0.000 9.823 9.986 Atomic orbital electron populations 1.21878 0.93632 1.02270 1.01947 1.21569 0.95449 0.95263 0.90146 0.94888 1.21412 0.95953 0.98557 0.95745 1.18891 0.90787 0.79733 0.91338 1.86331 1.25327 1.30262 1.96023 1.22767 1.41169 1.10897 0.94359 0.94481 1.26851 0.93557 0.97379 1.03235 1.70699 1.38392 1.10627 1.36508 0.83100 0.76728 0.74301 0.73002 1.20482 1.20116 1.21202 1.22043 0.98976 0.98958 0.95418 1.21605 0.87181 0.95445 0.97771 0.89886 1.22547 1.01667 0.97909 1.01455 1.62167 1.06923 1.54881 1.02444 1.22476 1.00883 0.97367 0.91900 0.92189 0.90690 0.92922 0.94281 0.93577 0.79623 0.90311 0.93271 0.92699 0.93164 0.92827 0.90804 0.90226 0.90522 0.95740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 8.77 71.98 0.63 -3.84 16 2 C 0.08 3.23 2.09 44.94 0.09 3.33 16 3 H 0.03 1.38 5.80 -2.38 -0.01 1.37 16 4 C -0.08 -3.71 4.07 30.65 0.12 -3.59 16 5 C 0.23 11.19 0.54 -11.46 -0.01 11.19 16 6 O -0.57 -27.40 7.02 -148.98 -1.05 -28.45 16 7 C -0.65 -36.08 8.14 25.60 0.21 -35.87 16 8 H 0.04 2.07 7.75 -2.91 -0.02 2.05 16 9 C -0.01 -0.38 5.22 84.66 0.44 0.07 16 10 N -0.92 -55.27 12.86 21.45 0.28 -55.00 16 11 Si 1.10 50.36 29.91 68.60 2.05 52.42 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 15 C -0.12 -4.82 4.69 30.64 0.14 -4.68 16 16 C 0.09 3.08 2.93 44.94 0.13 3.21 16 17 H 0.08 2.57 8.09 -2.39 -0.02 2.55 16 18 C -0.18 -5.94 7.30 71.98 0.53 -5.41 16 19 N -0.54 -18.52 4.69 -871.89 -4.09 -22.62 16 20 C 0.02 0.56 8.68 127.69 1.11 1.67 16 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.07 1.97 6.32 -2.39 -0.02 1.95 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.04 2.08 6.20 -2.39 -0.01 2.07 16 25 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.36 16.20 9.02 -74.06 -0.67 15.53 16 27 H 0.28 17.11 4.84 -92.71 -0.45 16.66 16 28 H 0.05 2.13 8.14 -2.38 -0.02 2.12 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.45 7.14 -2.39 -0.02 1.44 16 31 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 32 H 0.07 2.89 3.71 -2.39 -0.01 2.88 16 33 H 0.08 1.88 6.21 -2.39 -0.01 1.86 16 34 H 0.08 1.75 8.09 -2.39 -0.02 1.74 16 35 H 0.02 0.63 6.89 -2.39 -0.02 0.62 16 Total: -1.00 -61.25 257.12 1.32 -59.94 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.73 Total: 27.63 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 3.40 Total: -33.93 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -3.82 Total: -77.61 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -1.05 Total: -28.45 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.42 kcal Total: -61.25 1.32 -59.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259733207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.480 kcal (2) G-P(sol) polarization free energy of solvation -61.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds