Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 N 1.46902 * 109.47286 * 240.00527 * 2 1 3 5 5 C 1.40435 * 111.00146 * 56.04110 * 4 2 1 6 6 C 1.54280 * 111.68874 * 188.30349 * 5 4 2 7 7 O 1.40627 * 109.12470 * 282.77251 * 6 5 4 8 8 C 1.44084 * 116.72835 * 93.90613 * 7 6 5 9 9 C 1.53615 * 112.55248 * 318.10773 * 8 7 6 10 10 C 1.47637 * 110.99990 * 184.34776 * 4 2 1 11 11 H 1.09004 * 109.58243 * 273.28862 * 10 4 2 12 12 C 1.50701 * 109.59157 * 33.71602 * 10 4 2 13 13 H 1.07999 * 119.99430 * 5.79484 * 12 10 4 14 14 C 1.37876 * 119.99881 * 185.79174 * 12 10 4 15 15 N 1.31518 * 120.00019 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99850 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46878 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47158 * 119.99818 * 16 14 12 19 19 H 1.48498 * 109.46752 * 240.00011 * 16 14 12 20 20 H 1.09005 * 109.46648 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46955 * 299.99565 * 1 2 3 22 22 H 1.08996 * 109.47286 * 60.00004 * 1 2 3 23 23 H 1.09006 * 109.47611 * 120.00431 * 2 1 3 24 24 H 1.09004 * 109.46923 * 60.00196 * 3 2 1 25 25 H 1.08999 * 109.47581 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47748 * 300.00389 * 3 2 1 27 27 H 1.08998 * 109.03473 * 308.86932 * 5 4 2 28 28 H 1.08997 * 109.03897 * 67.80967 * 5 4 2 29 29 H 1.09005 * 109.52715 * 42.66703 * 6 5 4 30 30 H 1.08999 * 109.52663 * 162.87527 * 6 5 4 31 31 H 1.08995 * 108.86418 * 78.90247 * 8 7 6 32 32 H 1.09001 * 108.86237 * 197.41584 * 8 7 6 33 33 H 1.08996 * 109.03182 * 79.21501 * 9 8 7 34 34 H 1.09005 * 109.03157 * 198.14048 * 9 8 7 35 35 H 0.97002 * 119.99348 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 1.4970 -0.1099 -2.3655 6 6 1.8321 -0.9442 -3.6193 7 8 3.1714 -0.7144 -3.9812 8 6 4.1494 -1.6394 -3.4674 9 6 3.8975 -2.0068 -1.9972 10 6 3.4918 -0.8032 -1.1825 11 1 3.9309 0.0958 -1.6151 12 6 3.9696 -0.9695 0.2371 13 1 3.2540 -1.0852 1.0376 14 6 5.3203 -0.9739 0.5137 15 7 6.1917 -0.8335 -0.4613 16 14 5.9127 -1.1807 2.2732 17 1 4.7421 -1.3192 3.1765 18 1 6.7602 -2.3962 2.3705 19 1 6.7065 0.0095 2.6713 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 0.4140 -0.0320 -2.2694 28 1 1.9161 0.8895 -2.4824 29 1 1.6900 -2.0027 -3.4012 30 1 1.1773 -0.6490 -4.4391 31 1 4.1236 -2.5489 -4.0674 32 1 5.1386 -1.1896 -3.5523 33 1 3.1045 -2.7529 -1.9482 34 1 4.8094 -2.4293 -1.5752 35 1 7.1420 -0.8370 -0.2667 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259745286.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -33.062659 kcal Electronic energy + Delta-G solvation = -15768.518028 eV Core-core repulsion = 13381.052736 eV Total energy + Delta-G solvation = -2387.465292 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.12686 -36.44043 -33.51764 -31.24685 -30.71801 -27.50517 -26.32607 -26.06512 -23.26755 -21.70531 -19.61074 -18.64499 -16.22303 -16.01069 -15.58032 -14.82725 -14.42875 -13.96103 -13.77341 -13.15638 -12.66332 -12.39911 -12.33071 -11.64153 -11.38484 -11.14164 -11.02751 -10.91395 -10.70941 -10.59773 -10.38978 -10.21532 -9.83304 -9.58082 -9.38566 -8.81162 -8.64563 -8.31062 -6.97455 -6.06069 -4.09886 3.26812 3.35520 3.38641 4.38199 4.59789 5.05549 5.27019 5.62454 5.74326 5.89871 5.93107 5.95573 6.03679 6.12174 6.23596 6.30889 6.35167 6.45389 6.48897 6.52695 6.64007 6.71769 6.97355 7.05148 7.20809 7.27453 7.50599 7.81511 7.83914 8.12993 8.15745 8.37458 8.80495 9.01141 9.55647 11.02053 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.014249 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.591917 B = 1964.596762 C = 2737.417746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.087 3.913 3 C -0.175 4.175 4 N -0.552 5.552 5 C 0.040 3.960 6 C 0.071 3.929 7 O -0.398 6.398 8 C 0.067 3.933 9 C -0.127 4.127 10 C 0.230 3.770 11 H 0.016 0.984 12 C -0.514 4.514 13 H 0.070 0.930 14 C 0.061 3.939 15 N -0.888 5.888 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 0.200 -2.034 7.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 C -0.234 4.234 4 N -0.276 5.276 5 C -0.090 4.090 6 C -0.007 4.007 7 O -0.317 6.317 8 C -0.009 4.009 9 C -0.166 4.166 10 C 0.125 3.875 11 H 0.034 0.966 12 C -0.552 4.552 13 H 0.088 0.912 14 C -0.141 4.141 15 N -0.527 5.527 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.212 1.212 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.117 0.883 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.153 -0.101 -2.191 7.482 hybrid contribution 0.709 0.476 1.021 1.331 sum -6.445 0.375 -1.171 6.561 Atomic orbital electron populations 1.22014 0.97031 1.01223 1.00323 1.21594 0.92206 0.92522 0.95777 1.22359 1.03598 0.97953 0.99482 1.59486 1.14038 1.53575 1.00522 1.21613 0.99001 0.96491 0.91927 1.22377 0.83702 0.99310 0.95320 1.87404 1.15949 1.55180 1.73177 1.23044 0.91318 0.91069 0.95437 1.21968 1.02018 1.00317 0.92307 1.18787 0.79833 0.93589 0.95263 0.96608 1.21445 0.91545 1.49675 0.92510 0.91230 1.24949 0.96869 0.95311 0.96996 1.69981 1.01628 1.49976 1.31093 0.86548 0.78831 0.77623 0.85084 1.19729 1.21075 1.21161 0.92677 0.93364 0.93416 0.88318 0.94037 0.90682 0.94305 0.91640 0.96215 0.92891 0.90993 0.95459 0.89835 0.93942 0.89242 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.81 37.16 0.33 -2.04 16 2 C 0.09 1.71 2.50 -67.72 -0.17 1.54 16 3 C -0.18 -3.42 8.54 37.16 0.32 -3.10 16 4 N -0.55 -11.78 4.05 -224.99 -0.91 -12.69 16 5 C 0.04 0.77 4.46 -6.50 -0.03 0.74 16 6 C 0.07 1.30 6.43 37.83 0.24 1.54 16 7 O -0.40 -8.45 10.12 -34.28 -0.35 -8.80 16 8 C 0.07 1.43 6.72 37.48 0.25 1.68 16 9 C -0.13 -2.99 4.66 -27.47 -0.13 -3.12 16 10 C 0.23 5.67 0.91 -69.51 -0.06 5.61 16 11 H 0.02 0.46 7.38 -51.93 -0.38 0.07 16 12 C -0.51 -13.41 6.78 -34.44 -0.23 -13.65 16 13 H 0.07 1.81 5.21 -52.49 -0.27 1.53 16 14 C 0.06 1.62 5.07 -17.82 -0.09 1.53 16 15 N -0.89 -24.64 12.10 55.43 0.67 -23.97 16 16 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.72 6.18 -51.93 -0.32 0.40 16 23 H 0.10 2.13 5.32 -51.93 -0.28 1.86 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.71 6.47 -51.93 -0.34 1.38 16 26 H 0.04 0.72 6.66 -51.93 -0.35 0.37 16 27 H 0.07 1.11 5.57 -51.93 -0.29 0.82 16 28 H 0.02 0.42 6.62 -51.93 -0.34 0.07 16 29 H 0.05 0.97 7.11 -51.93 -0.37 0.60 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 33 H 0.04 0.96 7.39 -51.93 -0.38 0.58 16 34 H 0.09 2.30 6.44 -51.93 -0.33 1.97 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 259.53 15.07 3.91 3.91 Total: -1.00 -27.41 259.53 -6.60 -34.01 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.33 Total: 1.04 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 0.43 Total: -9.26 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.24 Total: -36.65 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.35 Total: -8.80 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.41 -6.60 -34.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745286.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.946 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds