Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 N 1.46902 * 109.47286 * 240.00527 * 2 1 3 5 5 C 1.40435 * 111.00146 * 56.04110 * 4 2 1 6 6 C 1.54280 * 111.68874 * 188.30349 * 5 4 2 7 7 O 1.40627 * 109.12470 * 282.77251 * 6 5 4 8 8 C 1.44084 * 116.72835 * 93.90613 * 7 6 5 9 9 C 1.53615 * 112.55248 * 318.10773 * 8 7 6 10 10 C 1.47637 * 110.99990 * 184.34776 * 4 2 1 11 11 H 1.09004 * 109.58243 * 273.28862 * 10 4 2 12 12 C 1.50701 * 109.59157 * 33.71602 * 10 4 2 13 13 H 1.07999 * 119.99430 * 5.79484 * 12 10 4 14 14 C 1.37876 * 119.99881 * 185.79174 * 12 10 4 15 15 N 1.31518 * 120.00019 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99850 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46878 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47158 * 119.99818 * 16 14 12 19 19 H 1.48498 * 109.46752 * 240.00011 * 16 14 12 20 20 H 1.09005 * 109.46648 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46955 * 299.99565 * 1 2 3 22 22 H 1.08996 * 109.47286 * 60.00004 * 1 2 3 23 23 H 1.09006 * 109.47611 * 120.00431 * 2 1 3 24 24 H 1.09004 * 109.46923 * 60.00196 * 3 2 1 25 25 H 1.08999 * 109.47581 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47748 * 300.00389 * 3 2 1 27 27 H 1.08998 * 109.03473 * 308.86932 * 5 4 2 28 28 H 1.08997 * 109.03897 * 67.80967 * 5 4 2 29 29 H 1.09005 * 109.52715 * 42.66703 * 6 5 4 30 30 H 1.08999 * 109.52663 * 162.87527 * 6 5 4 31 31 H 1.08995 * 108.86418 * 78.90247 * 8 7 6 32 32 H 1.09001 * 108.86237 * 197.41584 * 8 7 6 33 33 H 1.08996 * 109.03182 * 79.21501 * 9 8 7 34 34 H 1.09005 * 109.03157 * 198.14048 * 9 8 7 35 35 H 0.97002 * 119.99348 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 1.4970 -0.1099 -2.3655 6 6 1.8321 -0.9442 -3.6193 7 8 3.1714 -0.7144 -3.9812 8 6 4.1494 -1.6394 -3.4674 9 6 3.8975 -2.0068 -1.9972 10 6 3.4918 -0.8032 -1.1825 11 1 3.9309 0.0958 -1.6151 12 6 3.9696 -0.9695 0.2371 13 1 3.2540 -1.0852 1.0376 14 6 5.3203 -0.9739 0.5137 15 7 6.1917 -0.8335 -0.4613 16 14 5.9127 -1.1807 2.2732 17 1 4.7421 -1.3192 3.1765 18 1 6.7602 -2.3962 2.3705 19 1 6.7065 0.0095 2.6713 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 0.4140 -0.0320 -2.2694 28 1 1.9161 0.8895 -2.4824 29 1 1.6900 -2.0027 -3.4012 30 1 1.1773 -0.6490 -4.4391 31 1 4.1236 -2.5489 -4.0674 32 1 5.1386 -1.1896 -3.5523 33 1 3.1045 -2.7529 -1.9482 34 1 4.8094 -2.4293 -1.5752 35 1 7.1420 -0.8370 -0.2667 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259745286.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -51.345293 kcal Electronic energy + Delta-G solvation = -15769.310822 eV Core-core repulsion = 13381.052736 eV Total energy + Delta-G solvation = -2388.258087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80054 -38.06984 -35.43233 -33.01284 -32.41062 -29.21348 -27.97613 -27.69138 -25.14360 -23.28584 -21.41840 -20.33691 -18.13953 -17.70191 -17.27041 -16.53418 -16.15373 -15.76297 -15.39839 -14.80731 -14.33707 -14.12269 -13.85085 -13.22519 -13.16098 -12.83160 -12.77700 -12.57396 -12.48862 -12.32235 -11.97722 -11.89194 -11.67904 -11.22797 -11.12647 -10.62417 -10.54212 -10.16140 -8.72229 -8.11246 -6.20412 1.39840 1.42783 1.52865 2.42620 3.01392 3.20956 3.42885 4.11047 4.23106 4.31439 4.40067 4.44706 4.54042 4.64308 4.65885 4.70513 4.81995 4.85115 4.94603 5.03003 5.14469 5.18964 5.24729 5.37633 5.40098 5.59691 5.68173 5.79660 5.89744 6.24367 6.41628 6.60225 6.99987 7.06556 7.49053 8.96963 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.014249 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.591917 B = 1964.596762 C = 2737.417746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.080 3.920 3 C -0.166 4.166 4 N -0.552 5.552 5 C 0.037 3.963 6 C 0.066 3.934 7 O -0.413 6.413 8 C 0.074 3.926 9 C -0.120 4.120 10 C 0.240 3.760 11 H -0.032 1.032 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.287 1.287 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.099 0.901 28 H -0.001 1.001 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 -0.061 -1.846 9.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 C -0.224 4.224 4 N -0.276 5.276 5 C -0.093 4.093 6 C -0.011 4.011 7 O -0.332 6.332 8 C -0.002 4.002 9 C -0.159 4.159 10 C 0.134 3.866 11 H -0.014 1.014 12 C -0.558 4.558 13 H 0.088 0.912 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.778 3.222 17 H -0.189 1.189 18 H -0.208 1.208 19 H -0.213 1.213 20 H 0.079 0.921 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.017 0.983 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.223 -0.363 -1.999 9.444 hybrid contribution 1.289 0.603 0.952 1.712 sum -7.934 0.240 -1.048 8.006 Atomic orbital electron populations 1.21898 0.93328 1.02133 1.02028 1.21671 0.95080 0.91805 0.94213 1.22237 1.00686 0.98569 1.00951 1.59525 1.11722 1.54282 1.02109 1.21759 1.00607 0.95383 0.91514 1.22658 0.82695 0.99527 0.96247 1.87384 1.17278 1.55509 1.73070 1.22869 0.90805 0.92043 0.94441 1.21799 1.00714 0.99758 0.93581 1.18505 0.81917 0.91863 0.94327 1.01421 1.21728 0.91753 1.48898 0.93453 0.91184 1.25670 0.97156 0.95280 1.00471 1.70106 1.01711 1.51079 1.32888 0.85601 0.78369 0.77318 0.80940 1.18861 1.20802 1.21291 0.92145 0.91277 0.92103 0.90622 0.91712 0.95000 0.93587 0.88321 0.98298 0.92463 0.87181 0.92521 0.91858 0.93191 0.92085 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.81 71.98 0.63 -3.25 16 2 C 0.08 3.06 2.50 44.91 0.11 3.17 16 3 C -0.17 -6.38 8.54 71.98 0.61 -5.77 16 4 N -0.55 -23.14 4.05 -865.73 -3.51 -26.65 16 5 C 0.04 1.36 4.46 87.91 0.39 1.75 16 6 C 0.07 2.26 6.43 72.42 0.47 2.72 16 7 O -0.41 -17.18 10.12 -145.56 -1.47 -18.65 16 8 C 0.07 3.17 6.72 72.19 0.48 3.65 16 9 C -0.12 -5.69 4.66 30.12 0.14 -5.55 16 10 C 0.24 12.07 0.91 43.34 0.04 12.11 16 11 H -0.03 -1.89 7.38 -2.38 -0.02 -1.90 16 12 C -0.52 -27.75 6.78 25.60 0.17 -27.58 16 13 H 0.07 3.68 5.21 -2.91 -0.02 3.66 16 14 C 0.01 0.72 5.07 84.65 0.43 1.15 16 15 N -0.92 -52.66 12.10 21.45 0.26 -52.40 16 16 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 20 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 22 H 0.06 1.57 6.18 -2.39 -0.01 1.56 16 23 H 0.08 3.23 5.32 -2.38 -0.01 3.22 16 24 H 0.06 2.13 8.14 -2.38 -0.02 2.12 16 25 H 0.03 1.48 6.47 -2.39 -0.02 1.46 16 26 H 0.05 1.67 6.66 -2.39 -0.02 1.65 16 27 H 0.10 2.96 5.57 -2.39 -0.01 2.95 16 28 H 0.00 -0.04 6.62 -2.39 -0.02 -0.06 16 29 H 0.06 1.93 7.11 -2.38 -0.02 1.91 16 30 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.05 2.24 7.39 -2.39 -0.02 2.23 16 34 H 0.06 3.24 6.44 -2.38 -0.02 3.22 16 35 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -60.26 259.53 1.85 -58.41 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.06 Total: 11.60 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 3.49 Total: -17.59 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -3.25 Total: -79.05 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.47 Total: -18.65 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -60.26 1.85 -58.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745286.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.064 kcal (2) G-P(sol) polarization free energy of solvation -60.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds