Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46788 * 2 1 4 4 N 1.46899 * 109.47074 * 120.00294 * 2 1 3 5 5 C 1.47600 * 111.00265 * 296.53194 * 4 2 1 6 6 C 1.50733 * 108.45143 * 152.97094 * 5 4 2 7 7 O 1.43934 * 111.87583 * 93.38245 * 6 5 4 8 8 C 1.44226 * 116.11640 * 319.23854 * 7 6 5 9 9 C 1.50727 * 112.85142 * 318.69612 * 8 7 6 10 10 C 1.40466 * 110.99847 * 168.07833 * 4 2 1 11 11 H 1.09002 * 109.08459 * 67.38914 * 10 4 2 12 12 C 1.50704 * 109.08313 * 308.33361 * 10 4 2 13 13 H 1.08002 * 120.00080 * 334.75915 * 12 10 4 14 14 C 1.37878 * 119.99642 * 154.75557 * 12 10 4 15 15 N 1.31512 * 120.00120 * 355.44701 * 14 12 10 16 16 Si 1.86806 * 119.99775 * 175.43880 * 14 12 10 17 17 H 1.48500 * 109.47036 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46920 * 120.00370 * 16 14 12 19 19 H 1.48500 * 109.47055 * 240.00443 * 16 14 12 20 20 H 1.09003 * 109.47226 * 306.82167 * 1 2 3 21 21 H 1.09001 * 109.47502 * 66.82703 * 1 2 3 22 22 H 1.09000 * 109.47085 * 186.82278 * 1 2 3 23 23 H 1.09005 * 109.47102 * 240.00658 * 2 1 3 24 24 H 1.08999 * 109.46741 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47561 * 300.00269 * 3 2 1 26 26 H 1.09005 * 109.46762 * 60.00449 * 3 2 1 27 27 H 1.08997 * 109.63802 * 272.66463 * 5 4 2 28 28 H 1.09001 * 109.63466 * 33.28239 * 5 4 2 29 29 H 1.09002 * 108.99543 * 213.99569 * 6 5 4 30 30 H 1.08997 * 109.00205 * 332.75823 * 6 5 4 31 31 H 1.09005 * 108.79976 * 79.56256 * 8 7 6 32 32 H 1.09000 * 108.80778 * 197.93127 * 8 7 6 33 33 H 1.08995 * 109.52786 * 331.61808 * 9 8 7 34 34 H 1.09004 * 109.51987 * 211.41829 * 9 8 7 35 35 H 0.96993 * 120.00339 * 5.36519 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.6157 0.0231 2.4255 6 6 1.5256 -0.9742 3.5522 7 8 2.7543 -1.0535 4.2976 8 6 3.9702 -1.0205 3.5228 9 6 3.8849 -1.8455 2.2642 10 6 3.3971 -0.9506 1.1045 11 1 3.9395 -0.0055 1.1324 12 6 3.6798 -1.6424 -0.2042 13 1 2.9039 -2.2142 -0.6914 14 6 4.9291 -1.5452 -0.7795 15 7 5.8464 -0.7769 -0.2338 16 14 5.3187 -2.5050 -2.3340 17 1 4.1256 -3.2881 -2.7443 18 1 5.6878 -1.5609 -3.4192 19 1 6.4523 -3.4285 -2.0745 20 1 -0.3634 0.6159 0.8227 21 1 -0.3634 0.4044 -0.9447 22 1 -0.3633 -1.0204 0.1221 23 1 1.8933 -0.5138 -0.8901 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 2.3583 0.7833 2.6674 28 1 0.6436 0.4919 2.2725 29 1 0.7208 -0.6776 4.2249 30 1 1.2969 -1.9566 3.1391 31 1 4.1860 0.0130 3.2516 32 1 4.7878 -1.4005 4.1355 33 1 3.1818 -2.6649 2.4127 34 1 4.8694 -2.2476 2.0249 35 1 5.6713 -0.3400 0.6143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259745291.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -42.714707 kcal Electronic energy + Delta-G solvation = -15765.393272 eV Core-core repulsion = 13377.509435 eV Total energy + Delta-G solvation = -2387.883836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.36512 -36.40205 -33.74045 -31.42825 -30.72732 -27.84499 -26.54333 -25.80831 -23.28567 -21.44393 -20.01748 -18.91628 -16.91179 -16.26920 -15.45309 -14.87743 -14.22581 -14.04863 -13.74913 -13.46359 -12.88893 -12.34304 -12.26010 -12.01907 -11.60127 -11.34483 -11.00018 -10.93934 -10.89312 -10.59236 -10.36629 -10.27661 -10.13519 -9.97531 -9.69420 -8.88960 -8.45017 -8.42634 -7.15723 -6.36920 -4.09920 3.41420 3.43914 3.58058 4.36428 4.46914 4.80349 5.29786 5.44752 5.62001 5.68681 5.78615 5.85904 5.90551 5.95081 6.01349 6.07731 6.18967 6.24347 6.31473 6.35335 6.50671 6.57517 6.69009 6.73796 6.90156 7.01908 7.14070 7.40908 7.71009 7.88976 8.20243 8.41013 8.67892 8.89282 9.62094 10.98216 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.013298 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.465838 B = 2105.077218 C = 2728.729667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 C -0.175 4.175 4 N -0.533 5.533 5 C 0.021 3.979 6 C 0.068 3.932 7 O -0.406 6.406 8 C 0.061 3.939 9 C -0.140 4.140 10 C 0.207 3.793 11 H -0.002 1.002 12 C -0.583 4.583 13 H 0.057 0.943 14 C 0.020 3.980 15 N -0.913 5.913 16 Si 1.071 2.929 17 H -0.288 1.288 18 H -0.288 1.288 19 H -0.288 1.288 20 H 0.043 0.957 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.106 0.894 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 1.511 2.754 8.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 C -0.233 4.233 4 N -0.257 5.257 5 C -0.106 4.106 6 C -0.009 4.009 7 O -0.327 6.327 8 C -0.015 4.015 9 C -0.179 4.179 10 C 0.098 3.902 11 H 0.015 0.985 12 C -0.621 4.621 13 H 0.076 0.924 14 C -0.184 4.184 15 N -0.549 5.549 16 Si 0.900 3.100 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.214 1.214 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.123 0.877 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.533 0.808 1.828 6.832 hybrid contribution -0.662 1.095 0.910 1.570 sum -7.196 1.903 2.738 7.931 Atomic orbital electron populations 1.21923 0.96511 1.01461 1.00084 1.21600 0.92936 0.91937 0.95586 1.22367 1.02334 0.98526 1.00116 1.59442 1.19052 1.47079 1.00133 1.22384 1.00570 0.95644 0.92042 1.22324 0.85871 0.99661 0.92998 1.88135 1.13965 1.95322 1.35240 1.22494 0.85480 0.99430 0.94055 1.22204 1.02246 0.99496 0.93958 1.18447 0.83355 0.93734 0.94626 0.98483 1.21953 0.99355 1.34547 1.06292 0.92434 1.25776 0.92851 0.96358 1.03437 1.70738 1.36888 1.27902 1.19367 0.83513 0.75517 0.75913 0.75091 1.21415 1.21491 1.21410 0.93839 0.93238 0.92341 0.87663 0.92174 0.93354 0.94126 0.94566 0.90576 0.90603 0.92103 0.94308 0.90944 0.91848 0.90887 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.98 37.16 0.33 -1.91 16 2 C 0.09 1.71 2.62 -67.71 -0.18 1.53 16 3 C -0.17 -3.27 8.67 37.16 0.32 -2.95 16 4 N -0.53 -11.16 3.80 -224.78 -0.85 -12.01 16 5 C 0.02 0.39 3.79 -4.58 -0.02 0.37 16 6 C 0.07 1.21 6.35 36.02 0.23 1.44 16 7 O -0.41 -8.02 10.92 -35.23 -0.38 -8.40 16 8 C 0.06 1.24 6.26 36.02 0.23 1.47 16 9 C -0.14 -3.18 4.98 -27.14 -0.14 -3.31 16 10 C 0.21 4.96 0.93 -71.47 -0.07 4.89 16 11 H 0.00 -0.06 4.89 -51.93 -0.25 -0.31 16 12 C -0.58 -15.41 6.56 -34.44 -0.23 -15.63 16 13 H 0.06 1.56 7.29 -52.49 -0.38 1.18 16 14 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 15 N -0.91 -26.42 13.62 55.43 0.75 -25.66 16 16 Si 1.07 24.60 29.91 -169.99 -5.08 19.51 16 17 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H 0.04 0.63 6.39 -51.93 -0.33 0.30 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.11 2.35 5.96 -51.93 -0.31 2.04 16 24 H 0.06 1.32 6.88 -51.93 -0.36 0.96 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.70 6.90 -51.93 -0.36 0.34 16 27 H 0.04 0.71 6.62 -51.93 -0.34 0.37 16 28 H 0.08 1.22 5.67 -51.93 -0.29 0.93 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.13 7.26 -51.93 -0.38 0.76 16 31 H 0.04 0.81 6.61 -51.93 -0.34 0.47 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.45 7.25 -51.93 -0.38 1.07 16 34 H 0.07 1.77 8.04 -51.93 -0.42 1.36 16 35 H 0.27 7.81 6.66 -40.82 -0.27 7.54 16 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -28.17 261.28 -6.57 -34.74 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.33 Total: 1.55 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 0.39 Total: -13.66 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.10 Total: -37.67 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.38 Total: -8.40 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.17 -6.57 -34.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745291.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.976 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds