Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46788 * 2 1 4 4 N 1.46899 * 109.47074 * 120.00294 * 2 1 3 5 5 C 1.47600 * 111.00265 * 296.53194 * 4 2 1 6 6 C 1.50733 * 108.45143 * 152.97094 * 5 4 2 7 7 O 1.43934 * 111.87583 * 93.38245 * 6 5 4 8 8 C 1.44226 * 116.11640 * 319.23854 * 7 6 5 9 9 C 1.50727 * 112.85142 * 318.69612 * 8 7 6 10 10 C 1.40466 * 110.99847 * 168.07833 * 4 2 1 11 11 H 1.09002 * 109.08459 * 67.38914 * 10 4 2 12 12 C 1.50704 * 109.08313 * 308.33361 * 10 4 2 13 13 H 1.08002 * 120.00080 * 334.75915 * 12 10 4 14 14 C 1.37878 * 119.99642 * 154.75557 * 12 10 4 15 15 N 1.31512 * 120.00120 * 355.44701 * 14 12 10 16 16 Si 1.86806 * 119.99775 * 175.43880 * 14 12 10 17 17 H 1.48500 * 109.47036 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46920 * 120.00370 * 16 14 12 19 19 H 1.48500 * 109.47055 * 240.00443 * 16 14 12 20 20 H 1.09003 * 109.47226 * 306.82167 * 1 2 3 21 21 H 1.09001 * 109.47502 * 66.82703 * 1 2 3 22 22 H 1.09000 * 109.47085 * 186.82278 * 1 2 3 23 23 H 1.09005 * 109.47102 * 240.00658 * 2 1 3 24 24 H 1.08999 * 109.46741 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47561 * 300.00269 * 3 2 1 26 26 H 1.09005 * 109.46762 * 60.00449 * 3 2 1 27 27 H 1.08997 * 109.63802 * 272.66463 * 5 4 2 28 28 H 1.09001 * 109.63466 * 33.28239 * 5 4 2 29 29 H 1.09002 * 108.99543 * 213.99569 * 6 5 4 30 30 H 1.08997 * 109.00205 * 332.75823 * 6 5 4 31 31 H 1.09005 * 108.79976 * 79.56256 * 8 7 6 32 32 H 1.09000 * 108.80778 * 197.93127 * 8 7 6 33 33 H 1.08995 * 109.52786 * 331.61808 * 9 8 7 34 34 H 1.09004 * 109.51987 * 211.41829 * 9 8 7 35 35 H 0.96993 * 120.00339 * 5.36519 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.6157 0.0231 2.4255 6 6 1.5256 -0.9742 3.5522 7 8 2.7543 -1.0535 4.2976 8 6 3.9702 -1.0205 3.5228 9 6 3.8849 -1.8455 2.2642 10 6 3.3971 -0.9506 1.1045 11 1 3.9395 -0.0055 1.1324 12 6 3.6798 -1.6424 -0.2042 13 1 2.9039 -2.2142 -0.6914 14 6 4.9291 -1.5452 -0.7795 15 7 5.8464 -0.7769 -0.2338 16 14 5.3187 -2.5050 -2.3340 17 1 4.1256 -3.2881 -2.7443 18 1 5.6878 -1.5609 -3.4192 19 1 6.4523 -3.4285 -2.0745 20 1 -0.3634 0.6159 0.8227 21 1 -0.3634 0.4044 -0.9447 22 1 -0.3633 -1.0204 0.1221 23 1 1.8933 -0.5138 -0.8901 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 2.3583 0.7833 2.6674 28 1 0.6436 0.4919 2.2725 29 1 0.7208 -0.6776 4.2249 30 1 1.2969 -1.9566 3.1391 31 1 4.1860 0.0130 3.2516 32 1 4.7878 -1.4005 4.1355 33 1 3.1818 -2.6649 2.4127 34 1 4.8694 -2.2476 2.0249 35 1 5.6713 -0.3400 0.6143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259745291.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -61.571821 kcal Electronic energy + Delta-G solvation = -15766.210978 eV Core-core repulsion = 13377.509435 eV Total energy + Delta-G solvation = -2388.701542 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02349 -37.98988 -35.63536 -33.21696 -32.34405 -29.49507 -27.99151 -27.61452 -25.19276 -23.01180 -21.80569 -20.56787 -18.77714 -17.90332 -17.14138 -16.57679 -15.84121 -15.70735 -15.57133 -15.06108 -14.54929 -14.06385 -13.72509 -13.69019 -13.03346 -12.95303 -12.80281 -12.72157 -12.56191 -12.16795 -12.07915 -11.96977 -11.93942 -11.59199 -11.28900 -10.53073 -10.47793 -10.40020 -8.92204 -8.51964 -6.27241 1.52730 1.60092 1.76727 2.55292 2.84195 3.16541 3.24580 3.99227 4.02279 4.15711 4.22127 4.28375 4.37410 4.41893 4.50206 4.57749 4.63684 4.78425 4.85975 4.89805 4.92778 4.98923 5.04082 5.16510 5.22078 5.38109 5.51035 5.58445 5.95074 6.11541 6.19382 6.52318 6.65999 6.95511 7.52417 8.80353 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.013298 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.465838 B = 2105.077218 C = 2728.729667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.081 3.919 3 C -0.164 4.164 4 N -0.541 5.541 5 C 0.025 3.975 6 C 0.065 3.935 7 O -0.409 6.409 8 C 0.071 3.929 9 C -0.130 4.130 10 C 0.216 3.784 11 H -0.035 1.035 12 C -0.582 4.582 13 H 0.047 0.953 14 C -0.027 4.027 15 N -0.939 5.939 16 Si 1.113 2.887 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.016 0.984 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 1.565 3.058 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.027 4.027 3 C -0.223 4.223 4 N -0.264 5.264 5 C -0.102 4.102 6 C -0.012 4.012 7 O -0.330 6.330 8 C -0.005 4.005 9 C -0.169 4.169 10 C 0.106 3.894 11 H -0.018 1.018 12 C -0.620 4.620 13 H 0.066 0.934 14 C -0.226 4.226 15 N -0.577 5.577 16 Si 0.936 3.064 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.035 0.965 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.543 0.864 2.142 8.850 hybrid contribution -0.126 1.098 0.833 1.383 sum -8.669 1.961 2.975 9.372 Atomic orbital electron populations 1.21807 0.92829 1.02043 1.02075 1.21637 0.95757 0.91585 0.93674 1.22256 0.99400 0.98652 1.02005 1.59448 1.16858 1.48237 1.01892 1.22470 1.01497 0.95343 0.90892 1.22537 0.85916 0.99093 0.93606 1.88136 1.14228 1.95263 1.35330 1.22299 0.86722 0.98230 0.93250 1.22006 1.00635 0.99404 0.94880 1.18229 0.84951 0.92138 0.94048 1.01796 1.22173 0.98860 1.33768 1.07236 0.93445 1.27017 0.93053 0.96580 1.05914 1.70851 1.37713 1.29688 1.19436 0.82969 0.76034 0.75107 0.72265 1.19719 1.20987 1.20901 0.91782 0.91280 0.92481 0.91195 0.96522 0.91290 0.92312 0.96059 0.87440 0.86583 0.92981 0.95410 0.89241 0.92049 0.93293 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.98 71.98 0.65 -3.05 16 2 C 0.08 3.11 2.62 44.92 0.12 3.23 16 3 C -0.16 -6.05 8.67 71.98 0.62 -5.42 16 4 N -0.54 -22.31 3.80 -865.08 -3.29 -25.60 16 5 C 0.03 0.86 3.79 85.43 0.32 1.19 16 6 C 0.06 2.11 6.35 71.25 0.45 2.56 16 7 O -0.41 -15.38 10.92 -148.98 -1.63 -17.01 16 8 C 0.07 2.87 6.26 71.24 0.45 3.32 16 9 C -0.13 -6.01 4.98 30.33 0.15 -5.86 16 10 C 0.22 10.58 0.93 45.81 0.04 10.62 16 11 H -0.04 -1.95 4.89 -2.39 -0.01 -1.96 16 12 C -0.58 -31.51 6.56 25.60 0.17 -31.35 16 13 H 0.05 2.62 7.29 -2.91 -0.02 2.60 16 14 C -0.03 -1.52 5.45 84.66 0.46 -1.06 16 15 N -0.94 -56.18 13.62 21.45 0.29 -55.89 16 16 Si 1.11 50.01 29.91 68.60 2.05 52.07 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H 0.06 1.56 6.39 -2.39 -0.02 1.55 16 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.07 3.16 5.96 -2.38 -0.01 3.14 16 24 H 0.02 0.72 6.88 -2.39 -0.02 0.70 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 1.91 6.90 -2.38 -0.02 1.90 16 27 H 0.02 0.81 6.62 -2.39 -0.02 0.79 16 28 H 0.11 3.02 5.67 -2.39 -0.01 3.00 16 29 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.05 1.82 7.26 -2.39 -0.02 1.80 16 31 H 0.03 1.18 6.61 -2.38 -0.02 1.17 16 32 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.06 2.81 7.25 -2.39 -0.02 2.79 16 34 H 0.05 2.45 8.04 -2.38 -0.02 2.44 16 35 H 0.26 15.61 6.66 -92.71 -0.62 14.99 16 Total: -1.00 -61.97 261.28 2.07 -59.90 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.21 Total: 12.35 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 3.43 Total: -25.82 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -3.00 Total: -81.49 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -1.63 Total: -17.01 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.07 kcal Total: -61.97 2.07 -59.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745291.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.674 kcal (2) G-P(sol) polarization free energy of solvation -61.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds