Wall clock time and date at job start Mon Mar 30 2020 04:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.49150 * 2 1 4 4 C 1.53093 * 109.47904 * 120.02324 * 2 1 3 5 5 C 1.53174 * 109.16321 * 177.59314 * 4 2 1 6 6 C 1.50702 * 109.54511 * 62.88737 * 5 4 2 7 7 H 1.08006 * 119.99763 * 358.06053 * 6 5 4 8 8 C 1.37871 * 120.00068 * 178.05768 * 6 5 4 9 9 N 1.31515 * 120.00424 * 6.28952 * 8 6 5 10 10 Si 1.86803 * 119.99892 * 186.28618 * 8 6 5 11 11 H 1.48499 * 109.47203 * 60.00055 * 10 8 6 12 12 H 1.48501 * 109.47085 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47191 * 299.99959 * 10 8 6 14 14 C 1.53008 * 109.54305 * 183.15266 * 5 4 2 15 15 N 1.46893 * 109.46912 * 302.13837 * 14 5 4 16 16 C 1.53181 * 109.03684 * 303.02031 * 5 4 2 17 17 C 1.53094 * 109.16097 * 56.98086 * 16 5 4 18 18 H 1.08999 * 109.47455 * 182.40842 * 17 16 5 19 19 C 1.53001 * 109.47948 * 62.37738 * 17 16 5 20 20 O 1.42898 * 109.41473 * 302.38830 * 17 16 5 21 21 H 1.08999 * 109.47471 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47490 * 300.03700 * 1 2 3 23 23 H 1.09009 * 109.47034 * 60.03258 * 1 2 3 24 24 H 1.08998 * 109.52303 * 57.68451 * 4 2 1 25 25 H 1.09003 * 109.52355 * 297.49992 * 4 2 1 26 26 H 0.96994 * 120.00390 * 180.02562 * 9 8 6 27 27 H 1.08995 * 109.46738 * 62.14084 * 14 5 4 28 28 H 1.09001 * 109.47054 * 182.14106 * 14 5 4 29 29 H 1.00900 * 110.99636 * 173.60198 * 15 14 5 30 30 H 1.00897 * 111.00537 * 297.55504 * 15 14 5 31 31 H 1.08997 * 109.51984 * 297.07067 * 16 5 4 32 32 H 1.09002 * 109.57363 * 176.91699 * 16 5 4 33 33 H 1.09003 * 109.46783 * 283.72103 * 19 17 16 34 34 H 1.08994 * 109.47184 * 43.71925 * 19 17 16 35 35 H 1.09000 * 109.47045 * 163.72354 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0404 -0.7222 1.2497 5 6 3.5710 -0.7708 1.2123 6 6 4.1210 0.6317 1.2518 7 1 3.4473 1.4758 1.2673 8 6 5.4842 0.8374 1.2684 9 7 6.3046 -0.1805 1.1251 10 14 6.1660 2.5618 1.4942 11 1 5.7047 3.1100 2.7949 12 1 7.6501 2.5138 1.4751 13 1 5.6852 3.4325 0.3916 14 6 4.0876 -1.5593 2.4175 15 7 3.6068 -0.9319 3.6556 16 6 4.0176 -1.4601 -0.0807 17 6 3.4307 -0.7093 -1.2789 18 1 3.7100 -1.2204 -2.2002 19 6 3.9761 0.7200 -1.3025 20 8 2.0066 -0.6743 -1.1663 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5144 0.8897 23 1 -0.3633 0.5134 -0.8904 24 1 1.6442 -1.7373 1.2711 25 1 1.7147 -0.1841 2.1399 26 1 7.2637 -0.0359 1.1371 27 1 3.7224 -2.5848 2.3642 28 1 5.1776 -1.5608 2.4105 29 1 3.8462 -1.4909 4.4608 30 1 3.9646 0.0069 3.7480 31 1 3.6613 -2.4902 -0.0861 32 1 5.1058 -1.4507 -0.1424 33 1 3.4692 1.3148 -0.5426 34 1 5.0464 0.7038 -1.0970 35 1 3.8012 1.1594 -2.2845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259778262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:28 Heat of formation + Delta-G solvation = -50.840359 kcal Electronic energy + Delta-G solvation = -16077.166313 eV Core-core repulsion = 13688.930121 eV Total energy + Delta-G solvation = -2388.236191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.14460 -35.16185 -32.65237 -31.65481 -30.80110 -28.27625 -26.09942 -24.96180 -23.29540 -21.31989 -19.50307 -18.44193 -15.71572 -15.55109 -15.00370 -14.73756 -14.16252 -13.71730 -13.25038 -13.14452 -12.20280 -12.18622 -11.82500 -11.62177 -11.36776 -11.11727 -10.99553 -10.74983 -10.61442 -10.46698 -10.25457 -9.90483 -9.71907 -9.17312 -9.00870 -8.82751 -8.28825 -8.04279 -7.40735 -6.01063 -4.01218 3.24399 3.30524 3.34514 4.35867 4.78638 5.19572 5.75118 5.83263 5.93090 6.12562 6.19798 6.31346 6.40714 6.43691 6.52312 6.57428 6.72474 6.78679 6.92401 7.05181 7.11071 7.15352 7.25560 7.34501 7.53369 7.62307 7.73670 7.79348 8.02315 8.34937 8.46961 8.47183 8.60051 8.89860 9.51611 10.97322 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.015274 C = 0.013075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.770035 B = 1832.711319 C = 2141.023158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.062 0.938 4 C -0.117 4.117 5 C 0.077 3.923 6 C -0.483 4.483 7 H 0.056 0.944 8 C 0.063 3.937 9 N -0.886 5.886 10 Si 0.876 3.124 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.073 3.927 15 N -0.847 5.847 16 C -0.136 4.136 17 C 0.104 3.896 18 H 0.070 0.930 19 C -0.168 4.168 20 O -0.397 6.397 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.049 0.951 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.259 0.741 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.311 0.689 30 H 0.342 0.658 31 H 0.021 0.979 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 -0.050 -0.321 4.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.080 0.920 4 C -0.155 4.155 5 C 0.076 3.924 6 C -0.521 4.521 7 H 0.074 0.926 8 C -0.138 4.138 9 N -0.525 5.525 10 Si 0.704 3.296 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.058 4.058 15 N -0.374 5.374 16 C -0.175 4.175 17 C 0.047 3.953 18 H 0.088 0.912 19 C -0.225 4.225 20 O -0.317 6.317 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.040 0.960 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -4.732 -0.257 -0.792 4.804 hybrid contribution 1.759 1.036 0.548 2.114 sum -2.972 0.779 -0.244 3.082 Atomic orbital electron populations 1.21773 0.95477 1.01631 1.01003 1.22028 0.92327 0.96525 0.86266 0.91997 1.22027 0.98681 0.98323 0.96480 1.18096 0.89529 0.94556 0.90229 1.20939 0.91012 0.91536 1.48651 0.92611 1.24832 0.97071 0.96057 0.95792 1.69781 1.02856 1.29554 1.50336 0.86907 0.77912 0.85846 0.78919 1.20367 1.21545 1.20166 1.21762 0.99624 0.94141 0.90250 1.58802 1.67874 1.06922 1.03843 1.22220 1.03979 0.95333 0.95940 1.21908 0.79596 0.96367 0.97424 0.91250 1.22706 1.03512 0.97410 0.98827 1.87738 1.22321 1.78107 1.43542 0.92831 0.91946 0.93150 0.94581 0.91562 0.93057 0.95884 0.92382 0.88013 0.84464 0.96033 0.88007 0.89037 0.91055 0.96964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.56 37.15 0.36 -2.02 16 2 C 0.09 1.75 2.85 -26.69 -0.08 1.67 16 3 H 0.06 1.33 5.15 -51.93 -0.27 1.06 16 4 C -0.12 -2.51 3.93 -26.59 -0.10 -2.62 16 5 C 0.08 1.75 0.33 -155.47 -0.05 1.70 16 6 C -0.48 -11.55 3.31 -34.44 -0.11 -11.66 16 7 H 0.06 1.38 6.32 -52.48 -0.33 1.05 16 8 C 0.06 1.53 3.44 -17.82 -0.06 1.47 16 9 N -0.89 -22.41 9.39 55.43 0.52 -21.89 16 10 Si 0.88 19.75 29.54 -169.99 -5.02 14.72 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 C 0.07 1.64 5.53 -3.82 -0.02 1.62 16 15 N -0.85 -17.17 8.77 -10.37 -0.09 -17.26 16 16 C -0.14 -3.15 4.42 -26.59 -0.12 -3.27 16 17 C 0.10 2.28 3.91 -26.68 -0.10 2.17 16 18 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 19 C -0.17 -3.69 7.77 37.16 0.29 -3.40 16 20 O -0.40 -8.67 10.24 -35.23 -0.36 -9.03 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.43 7.67 -51.93 -0.40 1.03 16 26 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.44 6.10 -51.93 -0.32 1.12 16 29 H 0.31 5.54 9.08 -39.29 -0.36 5.18 16 30 H 0.34 7.26 8.16 -39.29 -0.32 6.94 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 33 H 0.09 2.10 3.32 -51.93 -0.17 1.93 16 34 H 0.07 1.68 6.41 -51.93 -0.33 1.35 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 255.92 15.07 3.86 3.86 Total: -1.00 -24.83 255.92 -6.42 -31.25 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -5.32 Total: 12.68 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -0.01 Total: -14.33 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.43 Total: -39.14 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.36 Total: -9.03 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -24.83 -6.42 -31.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.588 kcal (2) G-P(sol) polarization free energy of solvation -24.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds