Wall clock time and date at job start Mon Mar 30 2020 04:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.49150 * 2 1 4 4 C 1.53093 * 109.47904 * 120.02324 * 2 1 3 5 5 C 1.53174 * 109.16321 * 177.59314 * 4 2 1 6 6 C 1.50702 * 109.54511 * 62.88737 * 5 4 2 7 7 H 1.08006 * 119.99763 * 358.06053 * 6 5 4 8 8 C 1.37871 * 120.00068 * 178.05768 * 6 5 4 9 9 N 1.31515 * 120.00424 * 6.28952 * 8 6 5 10 10 Si 1.86803 * 119.99892 * 186.28618 * 8 6 5 11 11 H 1.48499 * 109.47203 * 60.00055 * 10 8 6 12 12 H 1.48501 * 109.47085 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47191 * 299.99959 * 10 8 6 14 14 C 1.53008 * 109.54305 * 183.15266 * 5 4 2 15 15 N 1.46893 * 109.46912 * 302.13837 * 14 5 4 16 16 C 1.53181 * 109.03684 * 303.02031 * 5 4 2 17 17 C 1.53094 * 109.16097 * 56.98086 * 16 5 4 18 18 H 1.08999 * 109.47455 * 182.40842 * 17 16 5 19 19 C 1.53001 * 109.47948 * 62.37738 * 17 16 5 20 20 O 1.42898 * 109.41473 * 302.38830 * 17 16 5 21 21 H 1.08999 * 109.47471 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47490 * 300.03700 * 1 2 3 23 23 H 1.09009 * 109.47034 * 60.03258 * 1 2 3 24 24 H 1.08998 * 109.52303 * 57.68451 * 4 2 1 25 25 H 1.09003 * 109.52355 * 297.49992 * 4 2 1 26 26 H 0.96994 * 120.00390 * 180.02562 * 9 8 6 27 27 H 1.08995 * 109.46738 * 62.14084 * 14 5 4 28 28 H 1.09001 * 109.47054 * 182.14106 * 14 5 4 29 29 H 1.00900 * 110.99636 * 173.60198 * 15 14 5 30 30 H 1.00897 * 111.00537 * 297.55504 * 15 14 5 31 31 H 1.08997 * 109.51984 * 297.07067 * 16 5 4 32 32 H 1.09002 * 109.57363 * 176.91699 * 16 5 4 33 33 H 1.09003 * 109.46783 * 283.72103 * 19 17 16 34 34 H 1.08994 * 109.47184 * 43.71925 * 19 17 16 35 35 H 1.09000 * 109.47045 * 163.72354 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0404 -0.7222 1.2497 5 6 3.5710 -0.7708 1.2123 6 6 4.1210 0.6317 1.2518 7 1 3.4473 1.4758 1.2673 8 6 5.4842 0.8374 1.2684 9 7 6.3046 -0.1805 1.1251 10 14 6.1660 2.5618 1.4942 11 1 5.7047 3.1100 2.7949 12 1 7.6501 2.5138 1.4751 13 1 5.6852 3.4325 0.3916 14 6 4.0876 -1.5593 2.4175 15 7 3.6068 -0.9319 3.6556 16 6 4.0176 -1.4601 -0.0807 17 6 3.4307 -0.7093 -1.2789 18 1 3.7100 -1.2204 -2.2002 19 6 3.9761 0.7200 -1.3025 20 8 2.0066 -0.6743 -1.1663 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5144 0.8897 23 1 -0.3633 0.5134 -0.8904 24 1 1.6442 -1.7373 1.2711 25 1 1.7147 -0.1841 2.1399 26 1 7.2637 -0.0359 1.1371 27 1 3.7224 -2.5848 2.3642 28 1 5.1776 -1.5608 2.4105 29 1 3.8462 -1.4909 4.4608 30 1 3.9646 0.0069 3.7480 31 1 3.6613 -2.4902 -0.0861 32 1 5.1058 -1.4507 -0.1424 33 1 3.4692 1.3148 -0.5426 34 1 5.0464 0.7038 -1.0970 35 1 3.8012 1.1594 -2.2845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:28 Heat of formation + Delta-G solvation = -66.671514 kcal Electronic energy + Delta-G solvation = -16077.852803 eV Core-core repulsion = 13688.930121 eV Total energy + Delta-G solvation = -2388.922682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88617 -36.92715 -34.37213 -33.36814 -32.58727 -29.93965 -27.90958 -26.68111 -25.08326 -22.99632 -21.25214 -20.22893 -17.58142 -17.29117 -16.70314 -16.54550 -15.84721 -15.43332 -15.02888 -14.90373 -13.92117 -13.83938 -13.41898 -13.19258 -13.05830 -12.86148 -12.71654 -12.51770 -12.37436 -12.22281 -12.04355 -11.71136 -11.47531 -10.95108 -10.76638 -10.66969 -10.12776 -9.81045 -9.13623 -7.90426 -5.93419 1.43407 1.48670 1.51196 2.49630 3.15582 3.29880 4.13586 4.24333 4.36367 4.49626 4.54621 4.64071 4.68835 4.87562 4.94014 4.96214 5.08194 5.11202 5.26350 5.30285 5.32160 5.42667 5.49204 5.54803 5.71176 5.76024 5.89838 5.99445 6.16719 6.53818 6.67253 6.74184 6.88913 7.08376 7.60410 9.06073 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.015274 C = 0.013075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.770035 B = 1832.711319 C = 2141.023158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.052 0.948 4 C -0.109 4.109 5 C 0.070 3.930 6 C -0.475 4.475 7 H 0.049 0.951 8 C 0.036 3.964 9 N -0.902 5.902 10 Si 0.917 3.083 11 H -0.276 1.276 12 H -0.297 1.297 13 H -0.277 1.277 14 C 0.079 3.921 15 N -0.839 5.839 16 C -0.133 4.133 17 C 0.103 3.897 18 H 0.083 0.917 19 C -0.158 4.158 20 O -0.401 6.401 21 H 0.057 0.943 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.254 0.746 27 H 0.022 0.978 28 H 0.034 0.966 29 H 0.327 0.673 30 H 0.339 0.661 31 H 0.018 0.982 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 0.393 -0.337 5.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.024 3.976 3 H 0.070 0.930 4 C -0.147 4.147 5 C 0.069 3.931 6 C -0.513 4.513 7 H 0.067 0.933 8 C -0.162 4.162 9 N -0.542 5.542 10 Si 0.745 3.255 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.203 1.203 14 C -0.052 4.052 15 N -0.367 5.367 16 C -0.172 4.172 17 C 0.046 3.954 18 H 0.101 0.899 19 C -0.215 4.215 20 O -0.321 6.321 21 H 0.076 0.924 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.037 0.963 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.901 0.186 -0.795 5.957 hybrid contribution 2.114 0.877 0.567 2.358 sum -3.787 1.064 -0.228 3.940 Atomic orbital electron populations 1.21746 0.92469 1.02433 1.02590 1.22162 0.94690 0.95491 0.85214 0.93023 1.21926 0.97418 0.98218 0.97127 1.18161 0.90677 0.94058 0.90195 1.20932 0.90781 0.91722 1.47884 0.93319 1.25179 0.97344 0.97726 0.95952 1.69896 1.02582 1.30520 1.51215 0.86261 0.76893 0.83599 0.78726 1.20110 1.22320 1.20265 1.21603 0.98062 0.94288 0.91225 1.58739 1.67401 1.06794 1.03783 1.22143 1.02657 0.95460 0.96909 1.21913 0.79889 0.96191 0.97418 0.89937 1.22552 1.02005 0.97508 0.99464 1.87746 1.21895 1.78293 1.44178 0.92411 0.90121 0.91880 0.94938 0.91676 0.93599 0.95902 0.94811 0.86276 0.84905 0.96311 0.90118 0.89995 0.92947 0.95233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.56 71.98 0.69 -3.44 16 2 C 0.08 3.16 2.85 30.62 0.09 3.24 16 3 H 0.05 2.12 5.15 -2.38 -0.01 2.11 16 4 C -0.11 -4.50 3.93 30.68 0.12 -4.38 16 5 C 0.07 3.14 0.33 -52.81 -0.02 3.12 16 6 C -0.47 -22.37 3.31 25.60 0.08 -22.29 16 7 H 0.05 2.36 6.32 -2.91 -0.02 2.34 16 8 C 0.04 1.76 3.44 84.65 0.29 2.05 16 9 N -0.90 -45.85 9.39 21.45 0.20 -45.65 16 10 Si 0.92 40.12 29.54 68.60 2.03 42.15 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.30 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.08 3.53 5.53 86.31 0.48 4.01 16 15 N -0.84 -32.96 8.77 -186.72 -1.64 -34.60 16 16 C -0.13 -6.10 4.42 30.69 0.14 -5.96 16 17 C 0.10 4.39 3.91 30.63 0.12 4.51 16 18 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 19 C -0.16 -6.79 7.77 71.98 0.56 -6.23 16 20 O -0.40 -16.75 10.24 -148.98 -1.53 -18.28 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 23 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 2.69 7.67 -2.39 -0.02 2.67 16 26 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.03 1.68 6.10 -2.39 -0.01 1.66 16 29 H 0.33 11.14 9.08 -89.69 -0.81 10.33 16 30 H 0.34 13.95 8.16 -89.70 -0.73 13.22 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 4.07 5.95 -2.39 -0.01 4.06 16 33 H 0.08 3.67 3.32 -2.39 -0.01 3.66 16 34 H 0.05 2.43 6.41 -2.39 -0.02 2.42 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -50.47 255.92 1.16 -49.31 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.45 Total: 32.43 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 2.55 Total: -25.37 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.44 Total: -80.25 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.53 Total: -18.28 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -50.47 1.16 -49.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.358 kcal (2) G-P(sol) polarization free energy of solvation -50.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds