Wall clock time and date at job start Mon Mar 30 2020 04:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.49151 * 2 1 4 4 C 1.53092 * 109.48046 * 239.97509 * 2 1 3 5 5 C 1.53187 * 109.21527 * 182.43934 * 4 2 1 6 6 C 1.50694 * 109.49433 * 297.05271 * 5 4 2 7 7 H 1.08007 * 120.00201 * 357.40824 * 6 5 4 8 8 C 1.37879 * 120.00026 * 177.40970 * 6 5 4 9 9 N 1.31514 * 119.99953 * 6.71847 * 8 6 5 10 10 Si 1.86804 * 119.99877 * 186.72005 * 8 6 5 11 11 H 1.48495 * 109.47174 * 90.00220 * 10 8 6 12 12 H 1.48506 * 109.46584 * 209.99910 * 10 8 6 13 13 H 1.48493 * 109.47265 * 329.99606 * 10 8 6 14 14 C 1.52999 * 109.59690 * 176.78144 * 5 4 2 15 15 N 1.46900 * 109.47069 * 65.71759 * 14 5 4 16 16 C 1.53174 * 109.03060 * 56.88764 * 5 4 2 17 17 C 1.53094 * 109.21615 * 303.11510 * 16 5 4 18 18 H 1.09000 * 109.47424 * 297.59579 * 17 16 5 19 19 C 1.52999 * 109.48219 * 177.57359 * 17 16 5 20 20 O 1.42901 * 109.48184 * 120.03358 * 2 1 3 21 21 H 1.09000 * 109.46715 * 299.96443 * 1 2 3 22 22 H 1.08998 * 109.47228 * 59.97127 * 1 2 3 23 23 H 1.09003 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.52538 * 302.31318 * 4 2 1 25 25 H 1.09003 * 109.52023 * 62.50263 * 4 2 1 26 26 H 0.96997 * 119.99813 * 179.97438 * 9 8 6 27 27 H 1.08998 * 109.47198 * 185.71500 * 14 5 4 28 28 H 1.08994 * 109.47281 * 305.71864 * 14 5 4 29 29 H 1.00899 * 111.00342 * 174.40264 * 15 14 5 30 30 H 1.00902 * 111.00530 * 298.35882 * 15 14 5 31 31 H 1.08996 * 109.52091 * 183.17782 * 16 5 4 32 32 H 1.09005 * 109.52142 * 63.05049 * 16 5 4 33 33 H 1.08997 * 109.47187 * 60.00010 * 19 17 16 34 34 H 1.09000 * 109.47131 * 179.97438 * 19 17 16 35 35 H 1.08999 * 109.46777 * 299.99691 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7722 -1.2130 6 6 4.1212 0.6302 -1.2541 7 1 3.4497 1.4713 -1.3438 8 6 5.4819 0.8396 -1.1773 9 7 6.3071 -0.1842 -1.2014 10 14 6.1531 2.5773 -1.0388 11 1 6.2654 2.9519 0.3937 12 1 7.4939 2.6420 -1.6740 13 1 5.2338 3.5193 -1.7263 14 6 4.0877 -1.5620 -2.4173 15 7 3.7684 -0.8351 -3.6532 16 6 4.0177 -1.4601 0.0807 17 6 3.4308 -0.7094 1.2789 18 1 3.8193 0.3088 1.2957 19 6 3.8231 -1.4266 2.5723 20 8 2.0066 -0.6743 1.1663 21 1 -0.3633 0.5133 0.8903 22 1 -0.3633 0.5143 -0.8897 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6443 -1.7374 -1.2711 25 1 1.7148 -0.1841 -2.1399 26 1 7.2643 -0.0368 -1.1477 27 1 5.1679 -1.6834 -2.3360 28 1 3.6126 -2.5427 -2.4395 29 1 4.1778 -1.2891 -4.4559 30 1 2.7708 -0.7330 -3.7653 31 1 5.1059 -1.4497 0.1418 32 1 3.6622 -2.4905 0.0867 33 1 4.9094 -1.4539 2.6574 34 1 3.4055 -0.8918 3.4253 35 1 3.4341 -2.4447 2.5554 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:30 Heat of formation + Delta-G solvation = -78.011919 kcal Electronic energy + Delta-G solvation = -15767.900009 eV Core-core repulsion = 13378.485571 eV Total energy + Delta-G solvation = -2389.414438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57708 -36.93123 -34.50864 -33.68056 -32.55578 -30.31433 -27.04756 -26.86760 -25.46596 -22.50856 -21.65219 -20.61557 -17.69909 -17.12090 -16.78939 -16.60013 -15.95151 -15.48001 -14.99184 -14.66848 -14.19413 -13.89098 -13.45730 -13.28658 -13.08394 -12.92340 -12.75107 -12.69103 -12.44365 -12.32965 -12.13927 -11.84666 -11.56875 -11.10106 -10.76862 -10.59627 -10.36063 -9.86338 -9.02546 -7.86708 -5.92239 1.42763 1.46875 1.52776 2.54626 3.02925 3.39304 4.07359 4.16653 4.30985 4.36890 4.52768 4.53939 4.61303 4.77951 4.80580 4.86527 4.94852 4.97897 5.04188 5.14456 5.22983 5.32053 5.34618 5.45181 5.47014 5.71176 5.78559 5.88059 6.22539 6.48602 6.66985 6.80069 7.00863 7.07893 7.69343 9.14060 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024352 B = 0.014467 C = 0.012561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.521707 B = 1935.017708 C = 2228.675350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.090 3.910 3 H 0.041 0.959 4 C -0.124 4.124 5 C 0.063 3.937 6 C -0.466 4.466 7 H 0.037 0.963 8 C 0.033 3.967 9 N -0.905 5.905 10 Si 0.925 3.075 11 H -0.283 1.283 12 H -0.293 1.293 13 H -0.278 1.278 14 C 0.087 3.913 15 N -0.831 5.831 16 C -0.124 4.124 17 C 0.098 3.902 18 H 0.037 0.963 19 C -0.133 4.133 20 O -0.398 6.398 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.252 0.748 27 H 0.069 0.931 28 H -0.020 1.020 29 H 0.328 0.672 30 H 0.329 0.671 31 H 0.073 0.927 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 -1.974 1.894 7.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.033 3.967 3 H 0.059 0.941 4 C -0.162 4.162 5 C 0.062 3.938 6 C -0.504 4.504 7 H 0.056 0.944 8 C -0.165 4.165 9 N -0.546 5.546 10 Si 0.754 3.246 11 H -0.210 1.210 12 H -0.219 1.219 13 H -0.204 1.204 14 C -0.044 4.044 15 N -0.360 5.360 16 C -0.163 4.163 17 C 0.041 3.959 18 H 0.055 0.945 19 C -0.191 4.191 20 O -0.319 6.319 21 H 0.082 0.918 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.088 0.912 28 H -0.002 1.002 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.602 -1.479 2.366 7.168 hybrid contribution 0.547 0.162 -0.628 0.849 sum -6.055 -1.316 1.738 6.435 Atomic orbital electron populations 1.21749 0.91921 1.02684 1.02763 1.22035 0.94992 0.94687 0.85005 0.94129 1.22123 0.97696 0.98650 0.97728 1.18279 0.90350 0.94423 0.90761 1.20858 0.91053 0.91461 1.47033 0.94446 1.25220 0.97476 0.98051 0.95765 1.69886 1.02190 1.30027 1.52528 0.86074 0.77490 0.83487 0.77525 1.20963 1.21946 1.20364 1.21697 1.01117 0.90593 0.90973 1.58453 1.16156 1.57529 1.03843 1.22000 1.02203 0.95822 0.96288 1.21922 0.80213 0.98215 0.95544 0.94536 1.21707 1.01249 1.00544 0.95557 1.87684 1.21888 1.78410 1.43889 0.91810 0.89990 0.91991 0.93820 0.91935 0.93889 0.91237 1.00181 0.86070 0.85866 0.90847 0.95606 0.91285 0.91642 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.56 71.98 0.69 -3.23 16 2 C 0.09 3.48 3.03 30.63 0.09 3.57 16 3 H 0.04 1.72 6.92 -2.39 -0.02 1.71 16 4 C -0.12 -4.98 3.85 30.69 0.12 -4.86 16 5 C 0.06 2.90 0.33 -52.81 -0.02 2.88 16 6 C -0.47 -24.00 5.67 25.60 0.15 -23.86 16 7 H 0.04 2.00 7.02 -2.91 -0.02 1.97 16 8 C 0.03 1.73 5.11 84.66 0.43 2.17 16 9 N -0.91 -49.30 9.49 21.45 0.20 -49.09 16 10 Si 0.93 43.75 29.54 68.60 2.03 45.78 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 14 C 0.09 3.98 5.46 86.30 0.47 4.46 16 15 N -0.83 -34.07 8.99 -186.73 -1.68 -35.75 16 16 C -0.12 -5.73 4.00 30.68 0.12 -5.60 16 17 C 0.10 4.19 3.04 30.63 0.09 4.28 16 18 H 0.04 1.74 7.38 -2.39 -0.02 1.72 16 19 C -0.13 -4.63 9.57 71.98 0.69 -3.94 16 20 O -0.40 -16.39 10.05 -148.98 -1.50 -17.88 16 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 2.41 7.00 -2.39 -0.02 2.39 16 26 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 27 H 0.07 3.63 6.20 -2.39 -0.01 3.61 16 28 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.33 11.86 9.08 -89.69 -0.81 11.05 16 30 H 0.33 12.08 7.57 -89.69 -0.68 11.40 16 31 H 0.07 3.75 6.11 -2.39 -0.01 3.74 16 32 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -56.76 267.89 1.47 -55.29 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.42 Total: 25.81 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 2.84 Total: -24.14 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.48 Total: -84.84 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.50 Total: -17.88 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -56.76 1.47 -55.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.724 kcal (2) G-P(sol) polarization free energy of solvation -56.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds