Wall clock time and date at job start Mon Mar 30 2020 04:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.48088 * 2 1 4 4 C 1.53093 * 109.48125 * 239.98097 * 2 1 3 5 5 C 1.53179 * 109.16156 * 297.61619 * 4 2 1 6 6 C 1.50693 * 109.54588 * 62.88538 * 5 4 2 7 7 H 1.08002 * 120.00275 * 244.62939 * 6 5 4 8 8 C 1.37871 * 120.00162 * 64.63229 * 6 5 4 9 9 N 1.31518 * 119.99884 * 357.14104 * 8 6 5 10 10 Si 1.86803 * 120.00315 * 177.14741 * 8 6 5 11 11 H 1.48496 * 109.46961 * 179.97438 * 10 8 6 12 12 H 1.48506 * 109.46852 * 299.99484 * 10 8 6 13 13 H 1.48492 * 109.47075 * 59.99414 * 10 8 6 14 14 C 1.53004 * 109.54437 * 183.06753 * 5 4 2 15 15 N 1.46896 * 109.47106 * 175.08808 * 14 5 4 16 16 C 1.53185 * 109.10868 * 302.97454 * 5 4 2 17 17 C 1.53277 * 109.06331 * 56.93913 * 16 5 4 18 18 H 1.09004 * 109.45597 * 62.44549 * 17 16 5 19 19 C 1.53000 * 109.46702 * 182.44094 * 17 16 5 20 20 O 1.42901 * 109.46523 * 302.44683 * 17 16 5 21 21 H 1.09000 * 109.47056 * 195.71499 * 1 2 3 22 22 H 1.08998 * 109.47233 * 315.71717 * 1 2 3 23 23 H 1.09001 * 109.47181 * 75.71590 * 1 2 3 24 24 H 1.08999 * 109.52296 * 177.70994 * 4 2 1 25 25 H 1.08998 * 109.52383 * 57.51906 * 4 2 1 26 26 H 0.96996 * 119.99933 * 353.53237 * 9 8 6 27 27 H 1.08998 * 109.46585 * 295.08327 * 14 5 4 28 28 H 1.08997 * 109.47282 * 55.07930 * 14 5 4 29 29 H 1.00902 * 111.00315 * 181.54801 * 15 14 5 30 30 H 1.00911 * 110.99804 * 305.49217 * 15 14 5 31 31 H 1.09000 * 109.52284 * 176.93394 * 16 5 4 32 32 H 1.09003 * 109.51946 * 297.12016 * 16 5 4 33 33 H 1.09005 * 109.46904 * 179.97438 * 19 17 16 34 34 H 1.08992 * 109.47662 * 299.99239 * 19 17 16 35 35 H 1.09003 * 109.46675 * 59.99670 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 1.5759 -2.1812 -1.2124 6 6 0.0703 -2.2321 -1.2518 7 1 -0.4792 -2.6216 -0.4076 8 6 -0.6057 -1.7813 -2.3657 9 7 0.0598 -1.2552 -3.3707 10 14 -2.4670 -1.9177 -2.4474 11 1 -2.9474 -1.3658 -3.7396 12 1 -2.8639 -3.3447 -2.3400 13 1 -3.0691 -1.1508 -1.3275 14 6 2.1452 -2.9307 -2.4187 15 7 1.7970 -4.3543 -2.3196 16 6 2.0769 -2.8342 0.0796 17 6 1.5650 -2.0286 1.2789 18 1 0.4754 -2.0553 1.2957 19 6 2.1103 -2.6373 2.5723 20 8 2.0068 -0.6742 1.1663 21 1 -0.3633 -0.9893 0.2783 22 1 -0.3633 0.7357 0.7175 23 1 -0.3633 0.2536 -0.9959 24 1 3.1297 -0.6870 -1.2711 25 1 1.6419 -0.2356 -2.1399 26 1 1.0136 -1.0979 -3.2913 27 1 1.7246 -2.5167 -3.3351 28 1 3.2296 -2.8221 -2.4353 29 1 2.1833 -4.8758 -3.0922 30 1 2.0981 -4.7396 -1.4369 31 1 1.7044 -3.8568 0.1391 32 1 3.1669 -2.8417 0.0849 33 1 1.7466 -2.0642 3.4252 34 1 1.7732 -3.6703 2.6581 35 1 3.1998 -2.6109 2.5551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259778268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:32 Heat of formation + Delta-G solvation = -37.493698 kcal Electronic energy + Delta-G solvation = -16122.262539 eV Core-core repulsion = 13734.605103 eV Total energy + Delta-G solvation = -2387.657436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.47243 -35.58749 -32.95413 -31.71439 -30.68141 -28.41258 -26.37941 -24.64158 -23.51023 -21.60566 -19.68751 -18.61902 -16.65587 -15.62615 -15.36492 -14.40775 -13.83114 -13.79044 -13.56780 -13.31546 -12.86810 -12.18536 -11.97909 -11.87835 -11.43507 -11.15146 -10.84318 -10.77827 -10.47462 -10.42971 -10.37587 -10.03265 -9.91962 -9.35929 -9.22795 -8.48195 -8.27901 -8.08770 -7.50764 -6.10124 -3.83093 3.48024 3.52049 3.67585 4.58641 4.60916 5.40747 5.56472 5.58373 5.71936 5.94684 5.98783 6.07069 6.14447 6.22946 6.26940 6.33864 6.44003 6.48274 6.68341 6.73203 6.84197 6.89882 6.94975 7.01118 7.16567 7.38620 7.48474 7.66010 8.11353 8.20216 8.33676 8.39577 8.49394 8.95095 9.73779 11.14084 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.015427 C = 0.013076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.050680 B = 1814.561002 C = 2140.810015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H 0.074 0.926 4 C -0.146 4.146 5 C 0.059 3.941 6 C -0.541 4.541 7 H 0.047 0.953 8 C 0.030 3.970 9 N -0.922 5.922 10 Si 1.050 2.950 11 H -0.286 1.286 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.062 3.938 15 N -0.825 5.825 16 C -0.125 4.125 17 C 0.090 3.910 18 H 0.068 0.932 19 C -0.143 4.143 20 O -0.393 6.393 21 H 0.097 0.903 22 H 0.016 0.984 23 H 0.069 0.931 24 H 0.029 0.971 25 H 0.081 0.919 26 H 0.274 0.726 27 H 0.093 0.907 28 H -0.020 1.020 29 H 0.317 0.683 30 H 0.322 0.678 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 -1.511 5.822 6.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.049 3.951 3 H 0.092 0.908 4 C -0.185 4.185 5 C 0.058 3.942 6 C -0.579 4.579 7 H 0.065 0.935 8 C -0.172 4.172 9 N -0.564 5.564 10 Si 0.880 3.120 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.216 1.216 14 C -0.069 4.069 15 N -0.353 5.353 16 C -0.163 4.163 17 C 0.032 3.968 18 H 0.086 0.914 19 C -0.200 4.200 20 O -0.313 6.313 21 H 0.116 0.884 22 H 0.035 0.965 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.110 0.890 28 H -0.002 1.002 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.099 -0.923 4.899 5.105 hybrid contribution 2.266 -0.550 0.764 2.454 sum 3.365 -1.472 5.663 6.750 Atomic orbital electron populations 1.22748 0.95544 1.03059 1.01396 1.21868 0.94646 0.93796 0.84774 0.90831 1.22398 0.97227 1.00169 0.98718 1.18333 0.96654 0.89620 0.89588 1.21437 0.89419 1.43023 1.04043 0.93458 1.25338 1.05585 0.94094 0.92194 1.70880 1.11118 1.42392 1.32034 0.83830 0.75890 0.76372 0.75904 1.21137 1.21591 1.21629 1.22148 0.92867 0.88388 1.03529 1.58610 1.67803 1.03588 1.05305 1.22122 0.97911 0.99390 0.96892 1.21985 0.98788 0.82237 0.93748 0.91402 1.21784 1.01175 0.99929 0.97093 1.87758 1.74329 1.24804 1.44404 0.88428 0.96499 0.91241 0.95212 0.90085 0.90922 0.88964 1.00157 0.87252 0.86518 0.91950 0.94584 0.92779 0.91839 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 7.78 37.16 0.29 -3.44 16 2 C 0.11 2.27 3.91 -26.68 -0.10 2.17 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C -0.15 -3.30 4.33 -26.59 -0.12 -3.42 16 5 C 0.06 1.34 0.33 -155.47 -0.05 1.29 16 6 C -0.54 -13.51 4.00 -34.45 -0.14 -13.65 16 7 H 0.05 1.22 6.15 -52.49 -0.32 0.90 16 8 C 0.03 0.79 3.68 -17.82 -0.07 0.73 16 9 N -0.92 -25.55 12.19 55.43 0.68 -24.88 16 10 Si 1.05 24.54 29.90 -169.99 -5.08 19.46 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.06 1.40 5.43 -3.82 -0.02 1.38 16 15 N -0.83 -16.98 9.29 -10.37 -0.10 -17.07 16 16 C -0.13 -2.56 3.64 -26.49 -0.10 -2.65 16 17 C 0.09 1.76 2.85 -26.59 -0.08 1.69 16 18 H 0.07 1.43 5.15 -51.93 -0.27 1.16 16 19 C -0.14 -2.26 9.57 37.16 0.36 -1.91 16 20 O -0.39 -8.30 10.24 -35.23 -0.36 -8.66 16 21 H 0.10 2.24 3.26 -51.93 -0.17 2.07 16 22 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.07 1.64 6.60 -51.93 -0.34 1.30 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.98 5.40 -51.93 -0.28 1.70 16 26 H 0.27 7.44 3.50 -40.82 -0.14 7.30 16 27 H 0.09 2.36 5.05 -51.93 -0.26 2.10 16 28 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 29 H 0.32 5.75 9.08 -39.29 -0.36 5.39 16 30 H 0.32 6.07 6.90 -39.29 -0.27 5.80 16 31 H 0.06 1.24 6.67 -51.93 -0.35 0.90 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 251.35 15.07 3.79 3.79 Total: -1.00 -27.48 251.35 -6.04 -33.52 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.94 Total: 11.67 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.02 Total: -17.81 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.58 Total: -41.95 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.36 Total: -8.66 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.48 -6.04 -33.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.976 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds