Wall clock time and date at job start Mon Mar 30 2020 04:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.48088 * 2 1 4 4 C 1.53093 * 109.48125 * 239.98097 * 2 1 3 5 5 C 1.53179 * 109.16156 * 297.61619 * 4 2 1 6 6 C 1.50693 * 109.54588 * 62.88538 * 5 4 2 7 7 H 1.08002 * 120.00275 * 244.62939 * 6 5 4 8 8 C 1.37871 * 120.00162 * 64.63229 * 6 5 4 9 9 N 1.31518 * 119.99884 * 357.14104 * 8 6 5 10 10 Si 1.86803 * 120.00315 * 177.14741 * 8 6 5 11 11 H 1.48496 * 109.46961 * 179.97438 * 10 8 6 12 12 H 1.48506 * 109.46852 * 299.99484 * 10 8 6 13 13 H 1.48492 * 109.47075 * 59.99414 * 10 8 6 14 14 C 1.53004 * 109.54437 * 183.06753 * 5 4 2 15 15 N 1.46896 * 109.47106 * 175.08808 * 14 5 4 16 16 C 1.53185 * 109.10868 * 302.97454 * 5 4 2 17 17 C 1.53277 * 109.06331 * 56.93913 * 16 5 4 18 18 H 1.09004 * 109.45597 * 62.44549 * 17 16 5 19 19 C 1.53000 * 109.46702 * 182.44094 * 17 16 5 20 20 O 1.42901 * 109.46523 * 302.44683 * 17 16 5 21 21 H 1.09000 * 109.47056 * 195.71499 * 1 2 3 22 22 H 1.08998 * 109.47233 * 315.71717 * 1 2 3 23 23 H 1.09001 * 109.47181 * 75.71590 * 1 2 3 24 24 H 1.08999 * 109.52296 * 177.70994 * 4 2 1 25 25 H 1.08998 * 109.52383 * 57.51906 * 4 2 1 26 26 H 0.96996 * 119.99933 * 353.53237 * 9 8 6 27 27 H 1.08998 * 109.46585 * 295.08327 * 14 5 4 28 28 H 1.08997 * 109.47282 * 55.07930 * 14 5 4 29 29 H 1.00902 * 111.00315 * 181.54801 * 15 14 5 30 30 H 1.00911 * 110.99804 * 305.49217 * 15 14 5 31 31 H 1.09000 * 109.52284 * 176.93394 * 16 5 4 32 32 H 1.09003 * 109.51946 * 297.12016 * 16 5 4 33 33 H 1.09005 * 109.46904 * 179.97438 * 19 17 16 34 34 H 1.08992 * 109.47662 * 299.99239 * 19 17 16 35 35 H 1.09003 * 109.46675 * 59.99670 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 1.5759 -2.1812 -1.2124 6 6 0.0703 -2.2321 -1.2518 7 1 -0.4792 -2.6216 -0.4076 8 6 -0.6057 -1.7813 -2.3657 9 7 0.0598 -1.2552 -3.3707 10 14 -2.4670 -1.9177 -2.4474 11 1 -2.9474 -1.3658 -3.7396 12 1 -2.8639 -3.3447 -2.3400 13 1 -3.0691 -1.1508 -1.3275 14 6 2.1452 -2.9307 -2.4187 15 7 1.7970 -4.3543 -2.3196 16 6 2.0769 -2.8342 0.0796 17 6 1.5650 -2.0286 1.2789 18 1 0.4754 -2.0553 1.2957 19 6 2.1103 -2.6373 2.5723 20 8 2.0068 -0.6742 1.1663 21 1 -0.3633 -0.9893 0.2783 22 1 -0.3633 0.7357 0.7175 23 1 -0.3633 0.2536 -0.9959 24 1 3.1297 -0.6870 -1.2711 25 1 1.6419 -0.2356 -2.1399 26 1 1.0136 -1.0979 -3.2913 27 1 1.7246 -2.5167 -3.3351 28 1 3.2296 -2.8221 -2.4353 29 1 2.1833 -4.8758 -3.0922 30 1 2.0981 -4.7396 -1.4369 31 1 1.7044 -3.8568 0.1391 32 1 3.1669 -2.8417 0.0849 33 1 1.7466 -2.0642 3.4252 34 1 1.7732 -3.6703 2.6581 35 1 3.1998 -2.6109 2.5551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:32 Heat of formation + Delta-G solvation = -55.882013 kcal Electronic energy + Delta-G solvation = -16123.059916 eV Core-core repulsion = 13734.605103 eV Total energy + Delta-G solvation = -2388.454814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18353 -37.33481 -34.64712 -33.38774 -32.49670 -30.05084 -28.11626 -26.39766 -25.33438 -23.21767 -21.40364 -20.43561 -18.51936 -17.29915 -17.00754 -16.11266 -15.61201 -15.54081 -15.29046 -15.05191 -14.59353 -13.76192 -13.61008 -13.34748 -12.99486 -12.85719 -12.63734 -12.48615 -12.24815 -12.20738 -12.18299 -11.88149 -11.64256 -11.09444 -10.91996 -10.30763 -10.07292 -9.99842 -9.20708 -8.12942 -5.85297 1.59637 1.64425 1.80433 2.70769 3.01328 3.45918 3.93693 4.08172 4.16871 4.25833 4.35663 4.49964 4.53938 4.61062 4.69842 4.81138 4.89460 4.91940 4.98580 5.09616 5.14853 5.19910 5.26527 5.32917 5.43906 5.62729 5.68153 5.87599 6.28678 6.45630 6.55826 6.62895 6.85020 6.95379 7.75823 9.12690 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.015427 C = 0.013076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.050680 B = 1814.561002 C = 2140.810015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 H 0.090 0.910 4 C -0.143 4.143 5 C 0.050 3.950 6 C -0.526 4.526 7 H 0.038 0.962 8 C -0.007 4.007 9 N -0.951 5.951 10 Si 1.079 2.921 11 H -0.297 1.297 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.067 3.933 15 N -0.833 5.833 16 C -0.119 4.119 17 C 0.084 3.916 18 H 0.053 0.947 19 C -0.135 4.135 20 O -0.395 6.395 21 H 0.085 0.915 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.271 0.729 27 H 0.062 0.938 28 H -0.012 1.012 29 H 0.332 0.668 30 H 0.334 0.666 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 -2.103 7.408 8.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.107 0.893 4 C -0.182 4.182 5 C 0.049 3.951 6 C -0.565 4.565 7 H 0.057 0.943 8 C -0.205 4.205 9 N -0.595 5.595 10 Si 0.906 3.094 11 H -0.223 1.223 12 H -0.211 1.211 13 H -0.200 1.200 14 C -0.064 4.064 15 N -0.363 5.363 16 C -0.156 4.156 17 C 0.027 3.973 18 H 0.071 0.929 19 C -0.192 4.192 20 O -0.315 6.315 21 H 0.104 0.896 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.006 0.994 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.447 -1.530 6.507 6.839 hybrid contribution 2.184 -0.388 0.279 2.236 sum 3.632 -1.918 6.785 7.932 Atomic orbital electron populations 1.22593 0.96012 1.02869 1.00458 1.21874 0.94236 0.94589 0.84478 0.89260 1.22322 0.97322 1.00059 0.98474 1.18403 0.95561 0.90086 0.91023 1.21518 0.90602 1.41311 1.03022 0.94341 1.26062 1.07718 0.94256 0.92435 1.70918 1.11197 1.44338 1.33066 0.83439 0.73580 0.76614 0.75773 1.22335 1.21100 1.19981 1.21938 0.92993 0.89423 1.02040 1.58507 1.68270 1.02802 1.06686 1.22047 0.98193 0.99516 0.95888 1.22142 0.98168 0.81627 0.95356 0.92913 1.21755 1.01516 1.00860 0.95112 1.87770 1.74275 1.25596 1.43861 0.89608 0.94550 0.93517 0.94773 0.92362 0.91363 0.92003 0.99400 0.85681 0.85178 0.91405 0.93940 0.91711 0.89889 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.93 7.78 71.98 0.56 -6.37 16 2 C 0.11 4.37 3.91 30.62 0.12 4.49 16 3 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 4 C -0.14 -6.38 4.33 30.69 0.13 -6.24 16 5 C 0.05 2.23 0.33 -52.81 -0.02 2.22 16 6 C -0.53 -25.99 4.00 25.60 0.10 -25.89 16 7 H 0.04 1.95 6.15 -2.91 -0.02 1.93 16 8 C -0.01 -0.35 3.68 84.65 0.31 -0.04 16 9 N -0.95 -53.52 12.19 21.45 0.26 -53.26 16 10 Si 1.08 49.41 29.90 68.60 2.05 51.46 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 C 0.07 3.02 5.43 86.31 0.47 3.49 16 15 N -0.83 -33.09 9.29 -186.72 -1.74 -34.83 16 16 C -0.12 -4.58 3.64 30.75 0.11 -4.47 16 17 C 0.08 3.11 2.85 30.69 0.09 3.20 16 18 H 0.05 2.12 5.15 -2.39 -0.01 2.11 16 19 C -0.14 -3.82 9.57 71.98 0.69 -3.13 16 20 O -0.39 -15.79 10.24 -148.98 -1.53 -17.31 16 21 H 0.09 3.86 3.26 -2.39 -0.01 3.85 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 2.19 6.60 -2.39 -0.02 2.18 16 24 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 2.88 5.40 -2.39 -0.01 2.87 16 26 H 0.27 15.02 3.50 -92.71 -0.32 14.70 16 27 H 0.06 3.20 5.05 -2.39 -0.01 3.19 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.33 11.54 9.08 -89.69 -0.81 10.72 16 30 H 0.33 11.89 6.90 -89.68 -0.62 11.27 16 31 H 0.07 2.53 6.67 -2.39 -0.02 2.52 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -57.03 251.35 1.73 -55.30 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.11 Total: 31.39 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 2.57 Total: -32.75 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -1.47 Total: -88.09 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.53 Total: -17.31 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Total: -57.03 1.73 -55.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.583 kcal (2) G-P(sol) polarization free energy of solvation -57.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds