Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 N 1.46903 * 109.47266 * 119.99681 * 2 1 3 5 5 C 1.47841 * 110.99618 * 59.16331 * 4 2 1 6 6 C 1.54907 * 104.79814 * 146.36324 * 5 4 2 7 7 C 1.55141 * 101.65153 * 322.92349 * 6 5 4 8 8 H 1.08997 * 110.85628 * 277.20588 * 7 6 5 9 9 C 1.52999 * 110.70530 * 154.03236 * 7 6 5 10 10 O 1.42905 * 109.46728 * 71.40706 * 9 7 6 11 11 C 1.34921 * 116.99780 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00168 * 0.02562 * 11 10 9 13 13 C 1.38636 * 119.99981 * 179.97438 * 11 10 9 14 14 N 1.31584 * 120.00088 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46913 * 90.00579 * 15 13 11 17 17 H 1.48501 * 109.47115 * 210.00062 * 15 13 11 18 18 H 1.48491 * 109.47283 * 329.99888 * 15 13 11 19 19 C 1.47448 * 110.99681 * 179.97438 * 4 2 1 20 20 H 1.09003 * 109.46848 * 299.99685 * 1 2 3 21 21 H 1.08997 * 109.47448 * 59.99914 * 1 2 3 22 22 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47324 * 240.00251 * 2 1 3 24 24 H 1.08999 * 109.46811 * 59.99936 * 3 2 1 25 25 H 1.08993 * 109.47327 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46640 * 300.00452 * 3 2 1 27 27 H 1.09005 * 110.37263 * 265.19263 * 5 4 2 28 28 H 1.09003 * 110.37796 * 27.41505 * 5 4 2 29 29 H 1.09005 * 110.98938 * 204.83466 * 6 5 4 30 30 H 1.09000 * 110.99122 * 81.01635 * 6 5 4 31 31 H 1.09000 * 109.47486 * 311.40644 * 9 7 6 32 32 H 1.09001 * 109.47362 * 191.39921 * 9 7 6 33 33 H 0.96994 * 120.00324 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.88458 * 117.34479 * 19 4 2 35 35 H 1.09000 * 109.89071 * 356.14809 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5293 -2.0864 1.2438 6 6 2.6736 -2.8874 1.9136 7 6 3.9292 -2.1896 1.3275 8 1 4.1673 -2.5847 0.3400 9 6 5.1233 -2.3424 2.2718 10 8 5.5775 -3.6972 2.2498 11 6 6.6325 -4.0023 3.0335 12 1 7.0936 -3.2371 3.6403 13 6 7.1242 -5.2982 3.0605 14 7 6.5622 -6.2307 2.3215 15 14 8.5845 -5.7208 4.1460 16 1 8.1003 -6.1414 5.4854 17 1 9.3563 -6.8289 3.5282 18 1 9.4578 -4.5281 4.2873 19 6 3.4937 -0.7126 1.2331 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 0.6206 -2.1501 1.8424 28 1 1.3449 -2.4561 0.2351 29 1 2.6383 -3.9370 1.6217 30 1 2.6398 -2.7839 2.9981 31 1 4.8217 -2.0767 3.2850 32 1 5.9292 -1.6838 1.9480 33 1 6.9059 -7.1375 2.3406 34 1 3.8521 -0.1643 2.1043 35 1 3.8916 -0.2663 0.3217 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259868080.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = -41.177007 kcal Electronic energy + Delta-G solvation = -14517.019850 eV Core-core repulsion = 12129.202694 eV Total energy + Delta-G solvation = -2387.817157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.22573 -36.27328 -34.23576 -31.68434 -29.80795 -29.07458 -26.94944 -24.97349 -23.37233 -21.80268 -20.09195 -19.45614 -17.42494 -16.12052 -15.85730 -14.89162 -14.40322 -13.92812 -13.87938 -13.42502 -13.14766 -12.71209 -12.45750 -12.20797 -12.07977 -11.66992 -11.45147 -11.13811 -10.98339 -10.86406 -10.78422 -10.59267 -10.44843 -10.26592 -9.98229 -9.39957 -9.08982 -8.14972 -7.92787 -5.92180 -3.55425 3.32970 3.35507 3.39484 4.06880 4.32988 4.83735 4.95027 5.03136 5.19059 5.26184 5.34778 5.41149 5.56085 5.58316 5.72283 5.77408 5.77823 5.85914 5.94589 6.05978 6.15143 6.16300 6.24886 6.32040 6.40832 6.60892 6.66217 6.76457 6.88563 7.16867 7.28974 7.50767 8.46223 9.51511 10.21375 11.29190 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.075204 B = 0.005656 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.232615 B = 4949.446755 C = 5165.506062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 C -0.146 4.146 4 N -0.526 5.526 5 C 0.041 3.959 6 C -0.114 4.114 7 C -0.103 4.103 8 H 0.077 0.923 9 C 0.085 3.915 10 O -0.295 6.295 11 C -0.359 4.359 12 H 0.061 0.939 13 C 0.022 3.978 14 N -0.890 5.890 15 Si 0.924 3.076 16 H -0.281 1.281 17 H -0.284 1.284 18 H -0.276 1.276 19 C 0.049 3.951 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.257 0.743 34 H 0.076 0.924 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 11.710 -3.855 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 C -0.203 4.203 4 N -0.251 5.251 5 C -0.086 4.086 6 C -0.152 4.152 7 C -0.122 4.122 8 H 0.095 0.905 9 C 0.007 3.993 10 O -0.210 6.210 11 C -0.438 4.438 12 H 0.079 0.921 13 C -0.176 4.176 14 N -0.533 5.533 15 Si 0.752 3.248 16 H -0.207 1.207 17 H -0.209 1.209 18 H -0.201 1.201 19 C -0.079 4.079 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.047 11.697 -3.593 15.833 hybrid contribution 1.189 -0.481 -0.056 1.284 sum -8.858 11.216 -3.649 14.750 Atomic orbital electron populations 1.21846 0.94532 1.01953 1.01799 1.21791 0.95596 0.95186 0.91394 1.21896 1.01245 0.95374 1.01808 1.63713 1.08352 1.15474 1.37529 1.23070 0.98762 0.87392 0.99372 1.22654 0.92497 0.99484 1.00551 1.22271 0.95553 0.94154 1.00241 0.90496 1.22024 0.93357 0.88001 0.95892 1.85621 1.48679 1.21220 1.65511 1.20811 1.07199 0.94749 1.21048 0.92102 1.24941 0.98956 0.95045 0.98633 1.70022 1.41287 1.01676 1.40363 0.85978 0.81094 0.78161 0.79608 1.20720 1.20926 1.20079 1.22790 0.87212 0.96556 1.01295 0.91910 0.92581 0.92641 0.94336 0.91885 0.92464 0.92564 0.90673 0.93893 0.90261 0.90821 0.95707 0.96134 0.93291 0.90523 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.08 37.16 0.34 -1.13 16 2 C 0.07 0.83 2.26 -67.71 -0.15 0.67 16 3 C -0.15 -1.53 9.06 37.16 0.34 -1.19 16 4 N -0.53 -7.50 5.03 -223.31 -1.12 -8.62 16 5 C 0.04 0.60 5.40 -2.30 -0.01 0.59 16 6 C -0.11 -2.01 6.47 -24.59 -0.16 -2.17 16 7 C -0.10 -1.93 3.20 -88.82 -0.28 -2.21 16 8 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 9 C 0.09 1.93 5.30 37.16 0.20 2.13 16 10 O -0.30 -8.62 9.72 -16.48 -0.16 -8.78 16 11 C -0.36 -10.78 9.89 30.88 0.31 -10.48 16 12 H 0.06 1.73 7.77 -52.49 -0.41 1.32 16 13 C 0.02 0.66 5.49 -17.51 -0.10 0.57 16 14 N -0.89 -28.30 13.67 55.48 0.76 -27.54 16 15 Si 0.92 22.39 29.55 -169.99 -5.02 17.37 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.05 0.75 5.74 -2.86 -0.02 0.74 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.57 7.03 -51.93 -0.37 0.21 16 23 H 0.04 0.49 8.10 -51.93 -0.42 0.06 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.62 6.50 -51.93 -0.34 0.28 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.60 7.57 -51.93 -0.39 0.21 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 31 H 0.02 0.55 8.00 -51.93 -0.42 0.14 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.08 1.18 7.82 -51.93 -0.41 0.77 16 35 H 0.05 0.77 6.35 -51.93 -0.33 0.44 16 LS Contribution 281.72 15.07 4.25 4.25 Total: -1.00 -32.58 281.72 -6.85 -39.44 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -6.01 Total: -3.61 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 0.46 Total: -12.49 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.36 Total: -36.16 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.16 Total: -8.78 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.58 -6.85 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868080.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.740 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds