Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 N 1.46903 * 109.47266 * 119.99681 * 2 1 3 5 5 C 1.47841 * 110.99618 * 59.16331 * 4 2 1 6 6 C 1.54907 * 104.79814 * 146.36324 * 5 4 2 7 7 C 1.55141 * 101.65153 * 322.92349 * 6 5 4 8 8 H 1.08997 * 110.85628 * 277.20588 * 7 6 5 9 9 C 1.52999 * 110.70530 * 154.03236 * 7 6 5 10 10 O 1.42905 * 109.46728 * 71.40706 * 9 7 6 11 11 C 1.34921 * 116.99780 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00168 * 0.02562 * 11 10 9 13 13 C 1.38636 * 119.99981 * 179.97438 * 11 10 9 14 14 N 1.31584 * 120.00088 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46913 * 90.00579 * 15 13 11 17 17 H 1.48501 * 109.47115 * 210.00062 * 15 13 11 18 18 H 1.48491 * 109.47283 * 329.99888 * 15 13 11 19 19 C 1.47448 * 110.99681 * 179.97438 * 4 2 1 20 20 H 1.09003 * 109.46848 * 299.99685 * 1 2 3 21 21 H 1.08997 * 109.47448 * 59.99914 * 1 2 3 22 22 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47324 * 240.00251 * 2 1 3 24 24 H 1.08999 * 109.46811 * 59.99936 * 3 2 1 25 25 H 1.08993 * 109.47327 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46640 * 300.00452 * 3 2 1 27 27 H 1.09005 * 110.37263 * 265.19263 * 5 4 2 28 28 H 1.09003 * 110.37796 * 27.41505 * 5 4 2 29 29 H 1.09005 * 110.98938 * 204.83466 * 6 5 4 30 30 H 1.09000 * 110.99122 * 81.01635 * 6 5 4 31 31 H 1.09000 * 109.47486 * 311.40644 * 9 7 6 32 32 H 1.09001 * 109.47362 * 191.39921 * 9 7 6 33 33 H 0.96994 * 120.00324 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.88458 * 117.34479 * 19 4 2 35 35 H 1.09000 * 109.89071 * 356.14809 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5293 -2.0864 1.2438 6 6 2.6736 -2.8874 1.9136 7 6 3.9292 -2.1896 1.3275 8 1 4.1673 -2.5847 0.3400 9 6 5.1233 -2.3424 2.2718 10 8 5.5775 -3.6972 2.2498 11 6 6.6325 -4.0023 3.0335 12 1 7.0936 -3.2371 3.6403 13 6 7.1242 -5.2982 3.0605 14 7 6.5622 -6.2307 2.3215 15 14 8.5845 -5.7208 4.1460 16 1 8.1003 -6.1414 5.4854 17 1 9.3563 -6.8289 3.5282 18 1 9.4578 -4.5281 4.2873 19 6 3.4937 -0.7126 1.2331 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 0.6206 -2.1501 1.8424 28 1 1.3449 -2.4561 0.2351 29 1 2.6383 -3.9370 1.6217 30 1 2.6398 -2.7839 2.9981 31 1 4.8217 -2.0767 3.2850 32 1 5.9292 -1.6838 1.9480 33 1 6.9059 -7.1375 2.3406 34 1 3.8521 -0.1643 2.1043 35 1 3.8916 -0.2663 0.3217 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259868080.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = -63.684635 kcal Electronic energy + Delta-G solvation = -14517.995854 eV Core-core repulsion = 12129.202694 eV Total energy + Delta-G solvation = -2388.793161 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48544 -38.23406 -35.54063 -33.84238 -31.24181 -30.25209 -27.95145 -26.95182 -25.17041 -22.98587 -21.43429 -20.70658 -19.59950 -17.66224 -17.24834 -16.50513 -15.86564 -15.80836 -15.32758 -14.81486 -14.42009 -14.14523 -13.93630 -13.45688 -13.18829 -13.08064 -12.91617 -12.81681 -12.26324 -12.17611 -12.12672 -11.91598 -11.80925 -11.73297 -11.67180 -11.32544 -11.15923 -10.16043 -9.29253 -8.19282 -5.89318 1.38938 1.45829 1.55016 2.32117 2.96374 3.13578 3.44261 3.69890 3.78612 4.10470 4.14230 4.31773 4.37533 4.44157 4.48807 4.53494 4.55614 4.75243 4.84965 4.88833 4.92059 4.96303 4.99263 5.04071 5.10414 5.20521 5.22690 5.30912 5.37268 5.41154 5.97003 6.19591 6.20582 7.23538 8.04314 9.05747 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.075204 B = 0.005656 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.232615 B = 4949.446755 C = 5165.506062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.063 3.937 3 C -0.142 4.142 4 N -0.528 5.528 5 C 0.053 3.947 6 C -0.116 4.116 7 C -0.102 4.102 8 H 0.061 0.939 9 C 0.082 3.918 10 O -0.335 6.335 11 C -0.382 4.382 12 H 0.071 0.929 13 C -0.041 4.041 14 N -0.939 5.939 15 Si 1.007 2.993 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.259 1.259 19 C 0.061 3.939 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.899 13.021 -3.598 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 C -0.200 4.200 4 N -0.254 5.254 5 C -0.074 4.074 6 C -0.154 4.154 7 C -0.121 4.121 8 H 0.080 0.920 9 C 0.004 3.996 10 O -0.251 6.251 11 C -0.460 4.460 12 H 0.089 0.911 13 C -0.234 4.234 14 N -0.584 5.584 15 Si 0.828 3.172 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.183 1.183 19 C -0.067 4.067 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.187 13.044 -3.341 16.884 hybrid contribution 1.172 -0.836 -0.173 1.450 sum -9.015 12.207 -3.514 15.577 Atomic orbital electron populations 1.21823 0.92971 1.02145 1.02774 1.21964 0.96893 0.95672 0.90014 1.21879 1.00876 0.94428 1.02804 1.63785 1.07285 1.15163 1.39129 1.22985 0.97812 0.87019 0.99594 1.22600 0.93767 0.98776 1.00231 1.22249 0.94497 0.97007 0.98392 0.92003 1.22277 0.94797 0.85385 0.97097 1.85563 1.48820 1.24854 1.65847 1.21347 1.07694 0.95581 1.21405 0.91128 1.26246 1.02413 0.94593 1.00190 1.70195 1.43503 1.02287 1.42438 0.84746 0.76683 0.78350 0.77381 1.19475 1.20248 1.18294 1.22675 0.88223 0.93704 1.02081 0.91884 0.90682 0.92859 0.94816 0.91891 0.93024 0.90595 0.89017 0.93201 0.92470 0.91685 0.95440 0.95570 0.93031 0.90352 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.08 71.98 0.65 -1.82 16 2 C 0.06 1.36 2.26 44.92 0.10 1.46 16 3 C -0.14 -2.62 9.06 71.98 0.65 -1.97 16 4 N -0.53 -14.18 5.03 -860.42 -4.33 -18.51 16 5 C 0.05 1.48 5.40 86.77 0.47 1.95 16 6 C -0.12 -4.17 6.47 31.98 0.21 -3.96 16 7 C -0.10 -3.88 3.20 -9.63 -0.03 -3.91 16 8 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 9 C 0.08 3.77 5.30 71.98 0.38 4.15 16 10 O -0.33 -20.18 9.72 -81.90 -0.80 -20.98 16 11 C -0.38 -23.28 9.89 67.92 0.67 -22.61 16 12 H 0.07 4.01 7.77 -2.91 -0.02 3.99 16 13 C -0.04 -2.49 5.49 84.82 0.47 -2.03 16 14 N -0.94 -60.97 13.67 21.61 0.30 -60.68 16 15 Si 1.01 45.84 29.55 68.60 2.03 47.87 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 19 C 0.06 1.81 5.74 86.63 0.50 2.31 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.05 0.96 7.03 -2.39 -0.02 0.95 16 23 H 0.03 0.78 8.10 -2.39 -0.02 0.76 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.00 6.50 -2.39 -0.02 0.98 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 2.27 8.14 -2.38 -0.02 2.26 16 28 H 0.05 1.33 7.57 -2.39 -0.02 1.31 16 29 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.06 2.42 7.94 -2.39 -0.02 2.40 16 31 H 0.03 1.24 8.00 -2.39 -0.02 1.22 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.08 2.31 7.82 -2.39 -0.02 2.29 16 35 H 0.07 1.83 6.35 -2.39 -0.02 1.81 16 Total: -1.00 -70.65 281.72 2.30 -68.35 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.03 Total: 10.36 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 4.07 Total: -26.42 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -4.03 Total: -79.19 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.80 Total: -20.98 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.65 2.30 -68.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868080.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.665 kcal (2) G-P(sol) polarization free energy of solvation -70.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds