Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 N 1.46895 * 109.47364 * 120.00299 * 2 1 3 5 5 C 1.47897 * 110.99981 * 63.36248 * 4 2 1 6 6 C 1.53989 * 107.06049 * 145.84063 * 5 4 2 7 7 C 1.54594 * 105.14105 * 358.77749 * 6 5 4 8 8 H 1.09000 * 110.72971 * 96.39450 * 7 6 5 9 9 C 1.53002 * 110.72766 * 219.50622 * 7 6 5 10 10 O 1.42899 * 109.46651 * 291.14470 * 9 7 6 11 11 C 1.34928 * 116.99696 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99848 * 0.02562 * 11 10 9 13 13 C 1.38632 * 119.99880 * 179.97438 * 11 10 9 14 14 N 1.31581 * 120.00209 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99942 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46947 * 90.00140 * 15 13 11 17 17 H 1.48503 * 109.46808 * 210.00288 * 15 13 11 18 18 H 1.48500 * 109.46899 * 329.99914 * 15 13 11 19 19 C 1.49012 * 110.96922 * 180.80318 * 4 2 1 20 20 H 1.09007 * 109.47277 * 304.08088 * 1 2 3 21 21 H 1.08995 * 109.47733 * 64.07878 * 1 2 3 22 22 H 1.08998 * 109.47145 * 184.08556 * 1 2 3 23 23 H 1.08997 * 109.46643 * 240.00880 * 2 1 3 24 24 H 1.09002 * 109.47096 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47504 * 300.00332 * 3 2 1 26 26 H 1.09000 * 109.46632 * 60.00408 * 3 2 1 27 27 H 1.09008 * 109.91805 * 26.49056 * 5 4 2 28 28 H 1.08997 * 109.91860 * 265.19572 * 5 4 2 29 29 H 1.08996 * 110.31312 * 239.85710 * 6 5 4 30 30 H 1.09007 * 110.31091 * 117.68939 * 6 5 4 31 31 H 1.09002 * 109.47134 * 51.14165 * 9 7 6 32 32 H 1.08999 * 109.47245 * 171.14680 * 9 7 6 33 33 H 0.96999 * 120.00254 * 179.97438 * 14 13 11 34 34 H 1.08999 * 110.86521 * 81.89764 * 19 4 2 35 35 H 1.08999 * 110.67886 * 318.61771 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.6127 -2.1144 1.1936 6 6 2.7487 -2.9121 1.8604 7 6 3.8276 -1.8620 2.2111 8 1 3.7302 -1.5402 3.2480 9 6 5.2290 -2.4167 1.9479 10 8 5.5175 -3.4496 2.8924 11 6 6.7231 -4.0479 2.7967 12 1 7.4196 -3.7396 2.0311 13 6 7.0680 -5.0575 3.6818 14 7 6.2196 -5.4327 4.6150 15 14 8.7375 -5.8853 3.5498 16 1 9.7204 -5.1538 4.3887 17 1 8.6322 -7.2896 4.0212 18 1 9.1866 -5.8707 2.1344 19 6 3.5092 -0.6951 1.2428 20 1 -0.3634 0.5759 0.8512 21 1 -0.3634 0.4492 -0.9242 22 1 -0.3633 -1.0250 0.0732 23 1 1.8932 -0.5137 -0.8901 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.4714 -2.4561 0.1682 28 1 0.6897 -2.2387 1.7599 29 1 3.1506 -3.6502 1.1664 30 1 2.3875 -3.4002 2.7657 31 1 5.2746 -2.8247 0.9382 32 1 5.9618 -1.6162 2.0499 33 1 6.4609 -6.1394 5.2341 34 1 3.8876 0.2474 1.6385 35 1 3.9228 -0.8921 0.2538 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259868081.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -41.560193 kcal Electronic energy + Delta-G solvation = -14502.213966 eV Core-core repulsion = 12114.380194 eV Total energy + Delta-G solvation = -2387.833773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13728 -36.28383 -34.27728 -31.68847 -29.79600 -29.01150 -26.98023 -24.99993 -23.41103 -21.81707 -20.04915 -19.35427 -17.41956 -16.20668 -15.67696 -14.95723 -14.55634 -13.92857 -13.82067 -13.46993 -13.00572 -12.94117 -12.35557 -12.22683 -12.12739 -11.65014 -11.44674 -11.11844 -10.99051 -10.89768 -10.75367 -10.58224 -10.49024 -10.16816 -9.94444 -9.41610 -9.08177 -8.27309 -7.92901 -5.91891 -3.55435 3.32740 3.35161 3.39197 4.03531 4.33886 4.83027 4.90759 5.01006 5.26319 5.28477 5.37631 5.42538 5.48905 5.56714 5.71269 5.74618 5.79655 5.82405 5.94620 6.07596 6.11210 6.14954 6.22318 6.32763 6.45080 6.52348 6.66680 6.79195 6.90604 7.11356 7.25151 7.50337 8.46185 9.51537 10.21371 11.29310 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.074536 B = 0.005638 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.568897 B = 4965.414266 C = 5178.103541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 C -0.145 4.145 4 N -0.514 5.514 5 C 0.037 3.963 6 C -0.117 4.117 7 C -0.084 4.084 8 H 0.085 0.915 9 C 0.083 3.917 10 O -0.293 6.293 11 C -0.360 4.360 12 H 0.061 0.939 13 C 0.023 3.977 14 N -0.889 5.889 15 Si 0.924 3.076 16 H -0.281 1.281 17 H -0.283 1.283 18 H -0.276 1.276 19 C 0.044 3.956 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.258 0.742 34 H 0.080 0.920 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 9.934 -9.137 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 C -0.202 4.202 4 N -0.239 5.239 5 C -0.091 4.091 6 C -0.155 4.155 7 C -0.103 4.103 8 H 0.104 0.896 9 C 0.004 3.996 10 O -0.208 6.208 11 C -0.440 4.440 12 H 0.078 0.922 13 C -0.175 4.175 14 N -0.532 5.532 15 Si 0.751 3.249 16 H -0.207 1.207 17 H -0.209 1.209 18 H -0.201 1.201 19 C -0.083 4.083 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.186 10.046 -8.437 16.015 hybrid contribution 1.354 -0.785 -1.007 1.861 sum -7.832 9.261 -9.444 15.372 Atomic orbital electron populations 1.21827 0.94458 1.02096 1.01661 1.21798 0.95744 0.95338 0.91400 1.21855 1.01202 0.95308 1.01881 1.64919 1.09152 1.12916 1.36915 1.22896 0.99354 0.87667 0.99158 1.22341 0.94408 0.97563 1.01175 1.21964 0.94565 0.93766 0.99982 0.89619 1.22063 0.93204 0.91483 0.92808 1.85634 1.35114 1.48666 1.51403 1.20803 0.91487 1.16482 1.15197 0.92159 1.24939 0.98566 0.97569 0.96446 1.70022 1.34734 1.30099 1.18320 0.85986 0.82135 0.78717 0.78042 1.20715 1.20897 1.20112 1.23246 0.87564 0.99167 0.98357 0.91898 0.92638 0.92615 0.94380 0.92547 0.92567 0.91793 0.94299 0.90715 0.91352 0.90631 0.96228 0.96016 0.93264 0.90114 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.22 37.16 0.34 -1.11 16 2 C 0.07 0.78 2.37 -67.71 -0.16 0.62 16 3 C -0.14 -1.50 9.04 37.16 0.34 -1.17 16 4 N -0.51 -7.37 5.11 -222.09 -1.14 -8.51 16 5 C 0.04 0.54 5.43 -2.76 -0.01 0.53 16 6 C -0.12 -2.09 6.41 -25.38 -0.16 -2.25 16 7 C -0.08 -1.58 3.32 -88.76 -0.29 -1.87 16 8 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 9 C 0.08 1.86 5.35 37.16 0.20 2.06 16 10 O -0.29 -8.55 9.67 -16.51 -0.16 -8.71 16 11 C -0.36 -10.82 9.89 30.88 0.31 -10.51 16 12 H 0.06 1.71 7.77 -52.49 -0.41 1.30 16 13 C 0.02 0.68 5.49 -17.51 -0.10 0.59 16 14 N -0.89 -28.25 13.67 55.48 0.76 -27.49 16 15 Si 0.92 22.35 29.55 -169.99 -5.02 17.33 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 C 0.04 0.68 4.85 -1.63 -0.01 0.67 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.58 7.12 -51.93 -0.37 0.21 16 23 H 0.04 0.46 7.99 -51.93 -0.41 0.05 16 24 H 0.06 0.60 6.92 -51.93 -0.36 0.24 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.53 7.65 -51.92 -0.40 0.13 16 28 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 29 H 0.07 1.28 7.76 -51.93 -0.40 0.88 16 30 H 0.07 1.43 8.14 -51.92 -0.42 1.00 16 31 H 0.02 0.43 8.02 -51.93 -0.42 0.02 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.08 1.16 7.67 -51.93 -0.40 0.76 16 35 H 0.04 0.64 7.93 -51.93 -0.41 0.23 16 LS Contribution 282.93 15.07 4.26 4.26 Total: -1.00 -32.58 282.93 -6.94 -39.52 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -6.09 Total: -3.95 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 0.45 Total: -12.46 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.38 Total: -36.00 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.16 Total: -8.71 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.58 -6.94 -39.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868081.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.037 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds