Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 N 1.46895 * 109.47364 * 120.00299 * 2 1 3 5 5 C 1.47897 * 110.99981 * 63.36248 * 4 2 1 6 6 C 1.53989 * 107.06049 * 145.84063 * 5 4 2 7 7 C 1.54594 * 105.14105 * 358.77749 * 6 5 4 8 8 H 1.09000 * 110.72971 * 96.39450 * 7 6 5 9 9 C 1.53002 * 110.72766 * 219.50622 * 7 6 5 10 10 O 1.42899 * 109.46651 * 291.14470 * 9 7 6 11 11 C 1.34928 * 116.99696 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99848 * 0.02562 * 11 10 9 13 13 C 1.38632 * 119.99880 * 179.97438 * 11 10 9 14 14 N 1.31581 * 120.00209 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99942 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46947 * 90.00140 * 15 13 11 17 17 H 1.48503 * 109.46808 * 210.00288 * 15 13 11 18 18 H 1.48500 * 109.46899 * 329.99914 * 15 13 11 19 19 C 1.49012 * 110.96922 * 180.80318 * 4 2 1 20 20 H 1.09007 * 109.47277 * 304.08088 * 1 2 3 21 21 H 1.08995 * 109.47733 * 64.07878 * 1 2 3 22 22 H 1.08998 * 109.47145 * 184.08556 * 1 2 3 23 23 H 1.08997 * 109.46643 * 240.00880 * 2 1 3 24 24 H 1.09002 * 109.47096 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47504 * 300.00332 * 3 2 1 26 26 H 1.09000 * 109.46632 * 60.00408 * 3 2 1 27 27 H 1.09008 * 109.91805 * 26.49056 * 5 4 2 28 28 H 1.08997 * 109.91860 * 265.19572 * 5 4 2 29 29 H 1.08996 * 110.31312 * 239.85710 * 6 5 4 30 30 H 1.09007 * 110.31091 * 117.68939 * 6 5 4 31 31 H 1.09002 * 109.47134 * 51.14165 * 9 7 6 32 32 H 1.08999 * 109.47245 * 171.14680 * 9 7 6 33 33 H 0.96999 * 120.00254 * 179.97438 * 14 13 11 34 34 H 1.08999 * 110.86521 * 81.89764 * 19 4 2 35 35 H 1.08999 * 110.67886 * 318.61771 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.6127 -2.1144 1.1936 6 6 2.7487 -2.9121 1.8604 7 6 3.8276 -1.8620 2.2111 8 1 3.7302 -1.5402 3.2480 9 6 5.2290 -2.4167 1.9479 10 8 5.5175 -3.4496 2.8924 11 6 6.7231 -4.0479 2.7967 12 1 7.4196 -3.7396 2.0311 13 6 7.0680 -5.0575 3.6818 14 7 6.2196 -5.4327 4.6150 15 14 8.7375 -5.8853 3.5498 16 1 9.7204 -5.1538 4.3887 17 1 8.6322 -7.2896 4.0212 18 1 9.1866 -5.8707 2.1344 19 6 3.5092 -0.6951 1.2428 20 1 -0.3634 0.5759 0.8512 21 1 -0.3634 0.4492 -0.9242 22 1 -0.3633 -1.0250 0.0732 23 1 1.8932 -0.5137 -0.8901 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.4714 -2.4561 0.1682 28 1 0.6897 -2.2387 1.7599 29 1 3.1506 -3.6502 1.1664 30 1 2.3875 -3.4002 2.7657 31 1 5.2746 -2.8247 0.9382 32 1 5.9618 -1.6162 2.0499 33 1 6.4609 -6.1394 5.2341 34 1 3.8876 0.2474 1.6385 35 1 3.9228 -0.8921 0.2538 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259868081.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = -64.120629 kcal Electronic energy + Delta-G solvation = -14503.192260 eV Core-core repulsion = 12114.380194 eV Total energy + Delta-G solvation = -2388.812067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39858 -38.22918 -35.58187 -33.84314 -31.23157 -30.19333 -27.96364 -26.96443 -25.21690 -23.01716 -21.28336 -20.67966 -19.61129 -17.55264 -17.35295 -16.57053 -15.94078 -15.62842 -15.21755 -14.91273 -14.66787 -14.16567 -13.71655 -13.38615 -13.28505 -13.07703 -12.93204 -12.81634 -12.27618 -12.20449 -12.16075 -11.86445 -11.80162 -11.70970 -11.59917 -11.33955 -11.13274 -10.15989 -9.39243 -8.18661 -5.88972 1.38930 1.45942 1.55028 2.31987 2.92801 3.14074 3.48235 3.69947 3.87635 4.08028 4.14545 4.20718 4.35177 4.44632 4.49900 4.57014 4.67438 4.73324 4.78802 4.84293 4.93502 4.95865 4.99197 5.03308 5.06911 5.22024 5.24821 5.28940 5.39092 5.41424 5.89075 6.17808 6.19966 7.23939 8.04903 9.06300 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.074536 B = 0.005638 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.568897 B = 4965.414266 C = 5178.103541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 C -0.142 4.142 4 N -0.521 5.521 5 C 0.048 3.952 6 C -0.118 4.118 7 C -0.084 4.084 8 H 0.067 0.933 9 C 0.079 3.921 10 O -0.334 6.334 11 C -0.382 4.382 12 H 0.071 0.929 13 C -0.041 4.041 14 N -0.939 5.939 15 Si 1.007 2.993 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.259 1.259 19 C 0.058 3.942 20 H 0.060 0.940 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.092 0.908 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.569 10.726 -10.598 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 C -0.200 4.200 4 N -0.246 5.246 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.103 4.103 8 H 0.085 0.915 9 C 0.002 3.998 10 O -0.250 6.250 11 C -0.461 4.461 12 H 0.089 0.911 13 C -0.234 4.234 14 N -0.583 5.583 15 Si 0.828 3.172 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.183 1.183 19 C -0.070 4.070 20 H 0.079 0.921 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.971 10.869 -9.922 17.235 hybrid contribution 1.226 -0.973 -0.581 1.669 sum -7.745 9.895 -10.503 16.378 Atomic orbital electron populations 1.21811 0.93064 1.02138 1.02671 1.21960 0.96882 0.95800 0.90076 1.21846 1.00938 0.94405 1.02785 1.64965 1.08199 1.12633 1.38816 1.22795 0.98083 0.87483 0.99624 1.22293 0.95484 0.97499 1.00315 1.21924 0.92828 0.95494 1.00078 0.91465 1.22311 0.95437 0.90199 0.91855 1.85576 1.35227 1.50420 1.53734 1.21346 0.92071 1.16983 1.15710 0.91123 1.26247 1.03409 0.98065 0.95710 1.70201 1.37584 1.31039 1.19511 0.84750 0.76113 0.77308 0.78996 1.19458 1.20265 1.18314 1.23122 0.88571 0.97811 0.97496 0.92113 0.90613 0.92895 0.94310 0.92964 0.90520 0.92072 0.92901 0.89675 0.92759 0.92581 0.95726 0.95393 0.93027 0.88952 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.22 71.98 0.66 -1.79 16 2 C 0.06 1.29 2.37 44.92 0.11 1.39 16 3 C -0.14 -2.57 9.04 71.98 0.65 -1.92 16 4 N -0.52 -14.08 5.11 -856.56 -4.38 -18.46 16 5 C 0.05 1.34 5.43 86.45 0.47 1.81 16 6 C -0.12 -4.30 6.41 31.47 0.20 -4.10 16 7 C -0.08 -3.22 3.32 -9.59 -0.03 -3.25 16 8 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 9 C 0.08 3.64 5.35 71.98 0.38 4.03 16 10 O -0.33 -20.09 9.67 -81.97 -0.79 -20.88 16 11 C -0.38 -23.28 9.89 67.91 0.67 -22.61 16 12 H 0.07 4.00 7.77 -2.91 -0.02 3.98 16 13 C -0.04 -2.48 5.49 84.82 0.47 -2.01 16 14 N -0.94 -60.99 13.67 21.61 0.30 -60.69 16 15 Si 1.01 45.77 29.55 68.60 2.03 47.79 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 C 0.06 1.69 4.85 86.56 0.42 2.11 16 20 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 21 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.05 0.96 7.12 -2.39 -0.02 0.94 16 23 H 0.04 0.84 7.99 -2.39 -0.02 0.82 16 24 H 0.05 0.98 6.92 -2.39 -0.02 0.96 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.34 7.65 -2.38 -0.02 1.33 16 28 H 0.08 2.23 8.11 -2.39 -0.02 2.21 16 29 H 0.05 2.10 7.76 -2.39 -0.02 2.08 16 30 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.02 1.09 8.02 -2.39 -0.02 1.08 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.09 2.51 7.67 -2.39 -0.02 2.49 16 35 H 0.05 1.41 7.93 -2.39 -0.02 1.39 16 Total: -1.00 -70.81 282.93 2.18 -68.63 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.03 Total: 9.95 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 4.00 Total: -26.34 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -4.08 Total: -79.15 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.79 Total: -20.88 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.81 2.18 -68.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868081.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.507 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds