Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 N 1.46898 * 109.47169 * 120.00329 * 2 1 3 5 5 C 1.47959 * 111.00119 * 67.68026 * 4 2 1 6 6 C 1.53937 * 86.18462 * 137.58492 * 5 4 2 7 7 C 1.52989 * 113.73409 * 221.81694 * 6 5 4 8 8 O 1.42900 * 109.47500 * 183.09750 * 7 6 5 9 9 C 1.42898 * 114.00342 * 180.02562 * 8 7 6 10 10 C 1.50710 * 109.46979 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99814 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99974 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99868 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99947 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47268 * 90.00035 * 14 12 10 16 16 H 1.48502 * 109.47324 * 209.99764 * 14 12 10 17 17 H 1.48503 * 109.47324 * 329.99791 * 14 12 10 18 18 C 1.47965 * 111.00116 * 167.03712 * 4 2 1 19 19 H 1.08996 * 109.47180 * 299.99789 * 1 2 3 20 20 H 1.09004 * 109.46980 * 60.00129 * 1 2 3 21 21 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46988 * 240.00502 * 2 1 3 23 23 H 1.09000 * 109.47525 * 185.08617 * 3 2 1 24 24 H 1.09003 * 109.47453 * 305.09101 * 3 2 1 25 25 H 1.08999 * 109.46913 * 65.08574 * 3 2 1 26 26 H 1.09005 * 113.76044 * 23.26576 * 5 4 2 27 27 H 1.09000 * 113.76104 * 251.90315 * 5 4 2 28 28 H 1.08998 * 113.73273 * 90.63566 * 6 5 4 29 29 H 1.09001 * 109.47350 * 303.09719 * 7 6 5 30 30 H 1.09008 * 109.47671 * 63.09688 * 7 6 5 31 31 H 1.08998 * 109.46980 * 299.99460 * 9 8 7 32 32 H 1.08998 * 109.47434 * 60.00170 * 9 8 7 33 33 H 0.96997 * 119.99894 * 180.02562 * 13 12 10 34 34 H 1.09004 * 113.75335 * 108.09683 * 18 4 2 35 35 H 1.08995 * 113.76182 * 336.73460 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.7019 -2.1366 1.1448 6 6 3.1258 -2.3654 1.6829 7 6 3.8596 -3.5265 1.0092 8 8 5.1375 -3.7033 1.6238 9 6 5.9088 -4.7686 1.0651 10 6 7.2291 -4.8643 1.7855 11 1 7.4565 -4.1797 2.5892 12 6 8.1471 -5.8251 1.4177 13 7 7.8702 -6.6584 0.4386 14 14 9.7838 -5.9432 2.3101 15 1 9.6521 -6.8665 3.4656 16 1 10.8190 -6.4599 1.3792 17 1 10.1816 -4.5970 2.7949 18 6 3.4656 -0.9865 1.0888 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 3.1262 1.4439 -0.0911 24 1 1.6042 1.9820 -0.8409 25 1 1.7530 1.9293 0.9320 26 1 1.5484 -2.5146 0.1340 27 1 0.9167 -2.4399 1.8373 28 1 3.1833 -2.4005 2.7708 29 1 3.2740 -4.4393 1.1194 30 1 3.9932 -3.3063 -0.0500 31 1 5.3659 -5.7073 1.1762 32 1 6.0850 -4.5737 0.0072 33 1 8.5159 -7.3346 0.1801 34 1 4.0896 -0.3708 1.7366 35 1 3.8280 -1.0281 0.0617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = -28.196939 kcal Electronic energy + Delta-G solvation = -14154.707663 eV Core-core repulsion = 11767.453364 eV Total energy + Delta-G solvation = -2387.254299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10153 -36.57150 -34.19633 -32.66978 -29.03529 -27.78848 -26.88018 -25.40542 -23.88259 -22.24991 -20.14656 -19.47497 -16.49735 -16.18204 -15.55464 -15.33076 -14.92771 -14.45405 -14.03552 -13.90836 -13.10927 -12.79040 -12.44764 -12.26036 -12.09743 -11.85597 -11.60320 -11.22365 -11.10208 -10.85929 -10.83438 -10.52135 -10.41279 -10.24460 -9.95425 -9.11236 -8.86429 -8.72481 -8.17868 -6.11299 -4.13103 3.30561 3.35443 3.40974 3.92870 4.30275 4.51728 4.71490 4.83954 4.91311 5.17128 5.25200 5.37488 5.40919 5.47724 5.52378 5.68741 5.72856 5.74336 5.79589 5.83470 5.97844 5.99000 6.10908 6.13159 6.17898 6.41017 6.54229 7.09094 7.13696 7.41686 7.79360 8.14740 8.57536 9.00488 9.51926 11.00305 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.068908 B = 0.004890 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.239472 B = 5724.526278 C = 5872.233701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 C -0.142 4.142 4 N -0.478 5.478 5 C 0.009 3.991 6 C -0.109 4.109 7 C 0.071 3.929 8 O -0.394 6.394 9 C 0.194 3.806 10 C -0.515 4.515 11 H 0.067 0.933 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.908 3.092 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.013 3.987 19 H 0.062 0.938 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.005 0.995 32 H 0.004 0.996 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 11.133 -1.675 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.199 4.199 4 N -0.201 5.201 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.007 4.007 8 O -0.314 6.314 9 C 0.120 3.880 10 C -0.553 4.553 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.735 3.265 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.116 4.116 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.823 11.529 -1.111 17.279 hybrid contribution 1.018 -0.836 -0.726 1.505 sum -11.804 10.693 -1.837 16.033 Atomic orbital electron populations 1.21787 0.94399 1.01890 1.01926 1.22188 0.96044 0.96159 0.92565 1.21756 1.01069 0.95096 1.02001 1.68594 1.06549 1.10033 1.34942 1.23902 0.97790 0.89517 1.00745 1.22945 0.93767 0.94063 1.01999 1.22242 0.87055 0.96095 0.95282 1.87858 1.26759 1.56176 1.60580 1.20206 0.90127 0.84030 0.93614 1.21072 0.99511 1.16343 1.18393 0.91502 1.24953 0.99007 0.95237 0.95305 1.69966 1.36166 1.19228 1.28497 0.86329 0.82371 0.78514 0.79247 1.20431 1.21078 1.19590 1.23947 0.90449 0.96484 1.00684 0.91925 0.92481 0.92743 0.93669 0.92664 0.92492 0.91862 0.91372 0.89395 0.87696 0.94249 0.94713 0.97722 0.97782 0.92655 0.89245 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.22 37.16 0.34 -1.01 16 2 C 0.04 0.44 2.26 -67.71 -0.15 0.29 16 3 C -0.14 -1.43 9.22 37.16 0.34 -1.09 16 4 N -0.48 -6.20 5.98 -230.25 -1.38 -7.58 16 5 C 0.01 0.12 6.53 -2.77 -0.02 0.10 16 6 C -0.11 -1.68 4.19 -89.69 -0.38 -2.06 16 7 C 0.07 1.34 5.78 37.15 0.21 1.56 16 8 O -0.39 -9.65 10.33 -35.23 -0.36 -10.02 16 9 C 0.19 5.41 5.69 36.01 0.20 5.62 16 10 C -0.52 -15.33 9.43 -34.44 -0.32 -15.66 16 11 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 14 Si 0.91 21.94 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.01 0.18 6.86 -2.76 -0.02 0.16 16 19 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.51 7.44 -51.93 -0.39 0.12 16 22 H 0.05 0.52 7.69 -51.93 -0.40 0.12 16 23 H 0.05 0.58 7.77 -51.93 -0.40 0.18 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.63 7.88 -51.92 -0.41 0.23 16 31 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.07 0.99 7.52 -51.93 -0.39 0.60 16 LS Contribution 288.71 15.07 4.35 4.35 Total: -1.00 -30.79 288.71 -7.72 -38.51 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -6.17 Total: -5.30 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 0.12 Total: -10.55 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: -0.64 Total: -33.91 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.36 Total: -10.02 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.79 -7.72 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.318 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds