Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 N 1.46898 * 109.47169 * 120.00329 * 2 1 3 5 5 C 1.47959 * 111.00119 * 67.68026 * 4 2 1 6 6 C 1.53937 * 86.18462 * 137.58492 * 5 4 2 7 7 C 1.52989 * 113.73409 * 221.81694 * 6 5 4 8 8 O 1.42900 * 109.47500 * 183.09750 * 7 6 5 9 9 C 1.42898 * 114.00342 * 180.02562 * 8 7 6 10 10 C 1.50710 * 109.46979 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99814 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99974 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99868 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99947 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47268 * 90.00035 * 14 12 10 16 16 H 1.48502 * 109.47324 * 209.99764 * 14 12 10 17 17 H 1.48503 * 109.47324 * 329.99791 * 14 12 10 18 18 C 1.47965 * 111.00116 * 167.03712 * 4 2 1 19 19 H 1.08996 * 109.47180 * 299.99789 * 1 2 3 20 20 H 1.09004 * 109.46980 * 60.00129 * 1 2 3 21 21 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46988 * 240.00502 * 2 1 3 23 23 H 1.09000 * 109.47525 * 185.08617 * 3 2 1 24 24 H 1.09003 * 109.47453 * 305.09101 * 3 2 1 25 25 H 1.08999 * 109.46913 * 65.08574 * 3 2 1 26 26 H 1.09005 * 113.76044 * 23.26576 * 5 4 2 27 27 H 1.09000 * 113.76104 * 251.90315 * 5 4 2 28 28 H 1.08998 * 113.73273 * 90.63566 * 6 5 4 29 29 H 1.09001 * 109.47350 * 303.09719 * 7 6 5 30 30 H 1.09008 * 109.47671 * 63.09688 * 7 6 5 31 31 H 1.08998 * 109.46980 * 299.99460 * 9 8 7 32 32 H 1.08998 * 109.47434 * 60.00170 * 9 8 7 33 33 H 0.96997 * 119.99894 * 180.02562 * 13 12 10 34 34 H 1.09004 * 113.75335 * 108.09683 * 18 4 2 35 35 H 1.08995 * 113.76182 * 336.73460 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.7019 -2.1366 1.1448 6 6 3.1258 -2.3654 1.6829 7 6 3.8596 -3.5265 1.0092 8 8 5.1375 -3.7033 1.6238 9 6 5.9088 -4.7686 1.0651 10 6 7.2291 -4.8643 1.7855 11 1 7.4565 -4.1797 2.5892 12 6 8.1471 -5.8251 1.4177 13 7 7.8702 -6.6584 0.4386 14 14 9.7838 -5.9432 2.3101 15 1 9.6521 -6.8665 3.4656 16 1 10.8190 -6.4599 1.3792 17 1 10.1816 -4.5970 2.7949 18 6 3.4656 -0.9865 1.0888 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 3.1262 1.4439 -0.0911 24 1 1.6042 1.9820 -0.8409 25 1 1.7530 1.9293 0.9320 26 1 1.5484 -2.5146 0.1340 27 1 0.9167 -2.4399 1.8373 28 1 3.1833 -2.4005 2.7708 29 1 3.2740 -4.4393 1.1194 30 1 3.9932 -3.3063 -0.0500 31 1 5.3659 -5.7073 1.1762 32 1 6.0850 -4.5737 0.0072 33 1 8.5159 -7.3346 0.1801 34 1 4.0896 -0.3708 1.7366 35 1 3.8280 -1.0281 0.0617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = -49.529599 kcal Electronic energy + Delta-G solvation = -14155.632716 eV Core-core repulsion = 11767.453364 eV Total energy + Delta-G solvation = -2388.179352 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21052 -38.41246 -35.32134 -34.76241 -30.59598 -28.83100 -28.61311 -26.41984 -25.27072 -24.37312 -21.11524 -20.68733 -18.65520 -17.49318 -17.11929 -16.82970 -16.49287 -16.02563 -15.30616 -15.13425 -14.80575 -13.79805 -13.77548 -13.62589 -13.21764 -13.08081 -12.95530 -12.83341 -12.72504 -12.38890 -12.16066 -12.01114 -11.70575 -11.53474 -11.38097 -11.27213 -10.86999 -10.27125 -9.79440 -8.33719 -6.46586 1.40010 1.42887 1.55047 2.33847 2.87803 3.00153 3.01770 3.54590 3.91521 3.99118 4.06483 4.20671 4.32717 4.41847 4.43705 4.57794 4.58375 4.70932 4.78963 4.84186 4.87226 4.91850 4.96218 5.05273 5.13086 5.13761 5.24065 5.36645 5.48728 5.53677 5.93673 6.12761 6.50942 6.79551 7.25657 8.78697 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.068908 B = 0.004890 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.239472 B = 5724.526278 C = 5872.233701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.034 3.966 3 C -0.139 4.139 4 N -0.480 5.480 5 C 0.022 3.978 6 C -0.112 4.112 7 C 0.065 3.935 8 O -0.409 6.409 9 C 0.208 3.792 10 C -0.551 4.551 11 H 0.062 0.938 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.264 1.264 18 C 0.013 3.987 19 H 0.060 0.940 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.039 0.961 31 H -0.013 1.013 32 H -0.014 1.014 33 H 0.271 0.729 34 H 0.084 0.916 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.949 11.742 -1.496 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.075 4.075 3 C -0.197 4.197 4 N -0.204 5.204 5 C -0.106 4.106 6 C -0.131 4.131 7 C -0.012 4.012 8 O -0.329 6.329 9 C 0.133 3.867 10 C -0.589 4.589 11 H 0.080 0.920 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.189 1.189 18 C -0.115 4.115 19 H 0.079 0.921 20 H 0.092 0.908 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.005 0.995 32 H 0.004 0.996 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.091 12.149 -0.937 17.885 hybrid contribution 1.007 -1.005 -0.829 1.647 sum -12.083 11.144 -1.766 16.532 Atomic orbital electron populations 1.21763 0.92852 1.02248 1.02699 1.22310 0.97291 0.96386 0.91480 1.21746 1.00605 0.94655 1.02666 1.68603 1.05330 1.10276 1.36180 1.23900 0.96035 0.89248 1.01438 1.22944 0.95639 0.93162 1.01381 1.22553 0.84941 0.97933 0.95771 1.87815 1.29015 1.54897 1.61162 1.19846 0.90167 0.84175 0.92519 1.21407 1.00968 1.17337 1.19170 0.91981 1.25973 1.03072 0.94226 0.95870 1.70069 1.37808 1.19577 1.29536 0.85164 0.76991 0.78945 0.78203 1.19213 1.19825 1.18851 1.23897 0.91631 0.95657 1.00348 0.92059 0.90827 0.92600 0.93950 0.93533 0.90667 0.92121 0.90393 0.87811 0.88465 0.93673 0.94251 0.99548 0.99609 0.91975 0.89723 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.22 71.98 0.66 -1.61 16 2 C 0.03 0.69 2.26 44.92 0.10 0.80 16 3 C -0.14 -2.58 9.22 71.98 0.66 -1.91 16 4 N -0.48 -11.78 5.98 -882.38 -5.27 -17.05 16 5 C 0.02 0.53 6.53 86.41 0.56 1.09 16 6 C -0.11 -3.42 4.19 -10.15 -0.04 -3.47 16 7 C 0.07 2.48 5.78 71.98 0.42 2.89 16 8 O -0.41 -20.51 10.33 -148.98 -1.54 -22.05 16 9 C 0.21 11.93 5.69 71.24 0.41 12.33 16 10 C -0.55 -33.36 9.43 25.60 0.24 -33.12 16 11 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 12 C 0.01 0.41 5.46 84.65 0.46 0.88 16 13 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 14 Si 0.98 44.59 29.54 68.60 2.03 46.61 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 C 0.01 0.38 6.86 86.41 0.59 0.97 16 19 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 21 H 0.05 0.90 7.44 -2.39 -0.02 0.88 16 22 H 0.04 0.90 7.69 -2.38 -0.02 0.88 16 23 H 0.05 0.93 7.77 -2.39 -0.02 0.91 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.70 7.79 -2.38 -0.02 1.68 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 28 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.45 7.88 -2.38 -0.02 1.43 16 31 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.07 1.92 7.52 -2.39 -0.02 1.90 16 Total: -1.00 -65.48 288.71 0.59 -64.89 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.02 Total: 4.77 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.07 Total: -21.15 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -4.99 Total: -73.07 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.54 Total: -22.05 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.48 0.59 -64.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.358 kcal (2) G-P(sol) polarization free energy of solvation -65.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds