Wall clock time and date at job start Mon Mar 30 2020 02:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47634 * 2 1 4 4 N 1.46896 * 109.47568 * 179.97438 * 3 2 1 5 5 C 1.44353 * 110.99943 * 70.70096 * 4 3 2 6 6 C 1.53835 * 112.11793 * 215.88981 * 5 4 3 7 7 O 1.44351 * 112.90974 * 318.44920 * 6 5 4 8 8 C 1.40311 * 117.09225 * 318.08646 * 7 6 5 9 9 C 1.54363 * 109.01712 * 92.98442 * 8 7 6 10 10 C 1.46588 * 111.46457 * 282.97882 * 9 8 7 11 11 H 1.09000 * 108.88875 * 300.14299 * 10 9 8 12 12 C 1.50701 * 108.89288 * 181.56253 * 10 9 8 13 13 H 1.07992 * 119.99801 * 295.30701 * 12 10 9 14 14 C 1.37874 * 119.99695 * 115.30147 * 12 10 9 15 15 N 1.31520 * 119.99800 * 173.57821 * 14 12 10 16 16 Si 1.86796 * 120.00535 * 353.58030 * 14 12 10 17 17 H 1.48502 * 109.46881 * 85.79332 * 16 14 12 18 18 H 1.48495 * 109.47605 * 205.79532 * 16 14 12 19 19 H 1.48502 * 109.46972 * 325.79717 * 16 14 12 20 20 H 1.08994 * 109.47010 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47042 * 300.00402 * 1 2 3 22 22 H 1.08997 * 109.47106 * 60.00114 * 1 2 3 23 23 H 1.09004 * 109.47484 * 239.99898 * 2 1 3 24 24 H 1.08997 * 109.47106 * 119.99886 * 2 1 3 25 25 H 1.09004 * 109.47235 * 59.99716 * 3 2 1 26 26 H 1.09007 * 109.46668 * 299.99924 * 3 2 1 27 27 H 1.08996 * 108.95479 * 336.57447 * 5 4 3 28 28 H 1.09012 * 108.95085 * 95.21190 * 5 4 3 29 29 H 1.08997 * 108.81323 * 79.37124 * 6 5 4 30 30 H 1.09001 * 108.81315 * 197.75169 * 6 5 4 31 31 H 1.09000 * 109.56590 * 333.09410 * 8 7 6 32 32 H 1.08997 * 109.56272 * 212.86273 * 8 7 6 33 33 H 1.08996 * 109.08695 * 43.48831 * 9 8 7 34 34 H 1.08999 * 109.08240 * 162.47013 * 9 8 7 35 35 H 0.96993 * 120.00635 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0269 0.9968 -1.2710 6 6 5.3123 0.1664 -1.1141 7 8 6.2171 0.7118 -0.1305 8 6 6.3888 2.1043 -0.1229 9 6 5.3954 2.7282 0.8805 10 6 4.0386 2.7828 0.3284 11 1 4.0507 3.3875 -0.5784 12 6 3.1274 3.4343 1.3365 13 1 2.9416 2.9543 2.2859 14 6 2.5312 4.6432 1.0468 15 7 1.6395 5.1506 1.8697 16 14 2.9897 5.5605 -0.5145 17 1 2.1616 5.0627 -1.6423 18 1 2.7461 7.0130 -0.3251 19 1 4.4258 5.3348 -0.8176 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6767 1.9563 -0.8901 27 1 3.2709 0.3887 -1.7677 28 1 4.2414 1.8677 -1.8907 29 1 5.0419 -0.8475 -0.8190 30 1 5.8249 0.1271 -2.0752 31 1 6.1980 2.5011 -1.1200 32 1 7.4090 2.3446 0.1765 33 1 5.3856 2.1296 1.7913 34 1 5.7221 3.7393 1.1235 35 1 1.2197 6.0009 1.6658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259972299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:33 Heat of formation + Delta-G solvation = -44.251656 kcal Electronic energy + Delta-G solvation = -15494.330738 eV Core-core repulsion = 13106.380254 eV Total energy + Delta-G solvation = -2387.950483 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.97189 -36.16843 -33.70458 -32.22849 -31.52378 -28.12850 -27.02675 -24.47993 -23.17712 -21.18449 -19.85751 -19.22636 -17.37736 -15.89955 -15.76676 -14.66771 -14.46076 -14.37105 -13.82295 -13.67081 -13.03307 -12.58783 -12.34243 -12.10109 -11.58256 -11.42940 -11.12360 -10.95780 -10.85628 -10.72618 -10.60247 -10.11905 -9.89397 -9.69882 -9.58311 -9.18243 -8.78144 -8.51927 -7.25827 -6.18587 -4.15387 3.17715 3.27778 3.28473 4.30735 4.30997 4.77853 5.26212 5.41951 5.51108 5.57659 5.67389 5.74856 5.86395 5.95837 5.96863 6.03167 6.10610 6.23913 6.32776 6.38445 6.41316 6.51314 6.65540 6.75541 6.88190 6.99467 7.30564 7.45638 7.58807 7.95723 8.13987 8.21618 8.60121 8.90110 9.44610 10.93943 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.015790 C = 0.010534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.427592 B = 1772.820050 C = 2657.336645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.063 3.937 4 N -0.525 5.525 5 C 0.018 3.982 6 C 0.078 3.922 7 O -0.383 6.383 8 C 0.063 3.937 9 C -0.123 4.123 10 C 0.176 3.824 11 H 0.003 0.997 12 C -0.507 4.507 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.892 5.892 16 Si 0.871 3.129 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.268 1.268 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.012 0.988 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -7.053 -6.595 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.064 4.064 4 N -0.250 5.250 5 C -0.112 4.112 6 C 0.001 3.999 7 O -0.302 6.302 8 C -0.014 4.014 9 C -0.162 4.162 10 C 0.070 3.930 11 H 0.021 0.979 12 C -0.546 4.546 13 H 0.100 0.900 14 C -0.129 4.129 15 N -0.529 5.529 16 Si 0.699 3.301 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.193 1.193 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.347 -7.315 -6.071 10.079 hybrid contribution -0.285 1.425 -1.799 2.312 sum 3.062 -5.891 -7.870 10.296 Atomic orbital electron populations 1.21708 0.96509 1.00482 1.01865 1.21587 0.94646 0.98295 1.01204 1.22119 0.87209 0.94393 1.02674 1.61574 1.07524 1.28981 1.26932 1.22477 0.97066 0.98634 0.93060 1.22946 0.89150 0.97322 0.90511 1.87356 1.63338 1.21738 1.57739 1.22503 0.98773 0.81588 0.98519 1.21284 0.95289 1.00062 0.99537 1.18790 0.93612 0.85168 0.95394 0.97927 1.20929 1.26214 1.04640 1.02787 0.90040 1.25048 0.94232 0.97330 0.96249 1.69892 1.26206 1.19564 1.37238 0.86945 0.79480 0.79403 0.84300 1.20477 1.21298 1.19258 0.93538 0.92388 0.93406 0.93585 0.91704 0.86999 0.96947 0.91378 0.95679 0.90009 0.94416 0.94724 0.90987 0.91000 0.91724 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.12 -2.03 5.96 -26.73 -0.16 -2.19 16 3 C 0.06 1.33 4.42 -3.83 -0.02 1.31 16 4 N -0.53 -11.24 4.31 -232.57 -1.00 -12.24 16 5 C 0.02 0.32 4.90 -4.75 -0.02 0.30 16 6 C 0.08 1.28 7.02 37.59 0.26 1.54 16 7 O -0.38 -7.25 10.29 -33.66 -0.35 -7.60 16 8 C 0.06 1.17 6.38 37.87 0.24 1.41 16 9 C -0.12 -2.65 4.92 -29.08 -0.14 -2.79 16 10 C 0.18 4.13 1.62 -71.43 -0.12 4.02 16 11 H 0.00 0.08 3.99 -51.93 -0.21 -0.13 16 12 C -0.51 -13.68 6.23 -34.44 -0.21 -13.89 16 13 H 0.08 2.43 8.00 -52.49 -0.42 2.01 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 16 Si 0.87 21.21 26.95 -169.99 -4.58 16.63 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.31 6.79 56.52 0.38 -5.92 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.72 6.59 -51.93 -0.34 0.38 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.11 2.73 5.92 -51.93 -0.31 2.42 16 26 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16 27 H 0.07 1.11 6.05 -51.93 -0.31 0.80 16 28 H 0.03 0.48 6.72 -51.92 -0.35 0.13 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.62 7.15 -51.93 -0.37 0.25 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.06 1.38 8.13 -51.93 -0.42 0.95 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -28.70 267.38 -6.71 -35.41 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.69 Total: -0.64 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 0.10 Total: -10.18 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.23 Total: -37.64 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.35 Total: -7.60 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.58 Total: 16.63 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.70 -6.71 -35.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.845 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds