Wall clock time and date at job start Mon Mar 30 2020 02:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47634 * 2 1 4 4 N 1.46896 * 109.47568 * 179.97438 * 3 2 1 5 5 C 1.44353 * 110.99943 * 70.70096 * 4 3 2 6 6 C 1.53835 * 112.11793 * 215.88981 * 5 4 3 7 7 O 1.44351 * 112.90974 * 318.44920 * 6 5 4 8 8 C 1.40311 * 117.09225 * 318.08646 * 7 6 5 9 9 C 1.54363 * 109.01712 * 92.98442 * 8 7 6 10 10 C 1.46588 * 111.46457 * 282.97882 * 9 8 7 11 11 H 1.09000 * 108.88875 * 300.14299 * 10 9 8 12 12 C 1.50701 * 108.89288 * 181.56253 * 10 9 8 13 13 H 1.07992 * 119.99801 * 295.30701 * 12 10 9 14 14 C 1.37874 * 119.99695 * 115.30147 * 12 10 9 15 15 N 1.31520 * 119.99800 * 173.57821 * 14 12 10 16 16 Si 1.86796 * 120.00535 * 353.58030 * 14 12 10 17 17 H 1.48502 * 109.46881 * 85.79332 * 16 14 12 18 18 H 1.48495 * 109.47605 * 205.79532 * 16 14 12 19 19 H 1.48502 * 109.46972 * 325.79717 * 16 14 12 20 20 H 1.08994 * 109.47010 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47042 * 300.00402 * 1 2 3 22 22 H 1.08997 * 109.47106 * 60.00114 * 1 2 3 23 23 H 1.09004 * 109.47484 * 239.99898 * 2 1 3 24 24 H 1.08997 * 109.47106 * 119.99886 * 2 1 3 25 25 H 1.09004 * 109.47235 * 59.99716 * 3 2 1 26 26 H 1.09007 * 109.46668 * 299.99924 * 3 2 1 27 27 H 1.08996 * 108.95479 * 336.57447 * 5 4 3 28 28 H 1.09012 * 108.95085 * 95.21190 * 5 4 3 29 29 H 1.08997 * 108.81323 * 79.37124 * 6 5 4 30 30 H 1.09001 * 108.81315 * 197.75169 * 6 5 4 31 31 H 1.09000 * 109.56590 * 333.09410 * 8 7 6 32 32 H 1.08997 * 109.56272 * 212.86273 * 8 7 6 33 33 H 1.08996 * 109.08695 * 43.48831 * 9 8 7 34 34 H 1.08999 * 109.08240 * 162.47013 * 9 8 7 35 35 H 0.96993 * 120.00635 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0269 0.9968 -1.2710 6 6 5.3123 0.1664 -1.1141 7 8 6.2171 0.7118 -0.1305 8 6 6.3888 2.1043 -0.1229 9 6 5.3954 2.7282 0.8805 10 6 4.0386 2.7828 0.3284 11 1 4.0507 3.3875 -0.5784 12 6 3.1274 3.4343 1.3365 13 1 2.9416 2.9543 2.2859 14 6 2.5312 4.6432 1.0468 15 7 1.6395 5.1506 1.8697 16 14 2.9897 5.5605 -0.5145 17 1 2.1616 5.0627 -1.6423 18 1 2.7461 7.0130 -0.3251 19 1 4.4258 5.3348 -0.8176 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6767 1.9563 -0.8901 27 1 3.2709 0.3887 -1.7677 28 1 4.2414 1.8677 -1.8907 29 1 5.0419 -0.8475 -0.8190 30 1 5.8249 0.1271 -2.0752 31 1 6.1980 2.5011 -1.1200 32 1 7.4090 2.3446 0.1765 33 1 5.3856 2.1296 1.7913 34 1 5.7221 3.7393 1.1235 35 1 1.2197 6.0009 1.6658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259972299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:33 Heat of formation + Delta-G solvation = -64.323792 kcal Electronic energy + Delta-G solvation = -15495.201131 eV Core-core repulsion = 13106.380254 eV Total energy + Delta-G solvation = -2388.820877 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.55735 -37.70966 -35.44887 -34.01892 -33.15219 -29.62847 -28.81611 -26.01861 -24.92665 -22.60654 -21.45088 -20.94251 -19.38080 -17.52055 -17.35365 -16.26657 -16.09699 -15.83338 -15.52199 -15.15468 -14.83322 -14.44338 -13.78270 -13.63043 -13.20798 -13.00721 -12.82993 -12.63279 -12.36145 -12.24160 -12.19920 -11.90730 -11.61357 -11.28753 -11.17764 -11.07628 -10.72718 -10.20200 -8.96297 -8.34357 -6.34313 1.23144 1.27025 1.36183 2.25662 2.82141 3.02554 3.46249 4.05652 4.09075 4.17738 4.20125 4.33725 4.42664 4.54109 4.55680 4.59492 4.66430 4.71052 4.81302 5.01247 5.02987 5.04089 5.13599 5.27881 5.31513 5.39329 5.51785 5.59088 5.75170 6.17852 6.38692 6.59746 6.65253 6.81142 7.28144 8.82242 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.015790 C = 0.010534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.427592 B = 1772.820050 C = 2657.336645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.068 3.932 4 N -0.534 5.534 5 C 0.013 3.987 6 C 0.075 3.925 7 O -0.398 6.398 8 C 0.073 3.927 9 C -0.125 4.125 10 C 0.179 3.821 11 H 0.000 1.000 12 C -0.501 4.501 13 H 0.034 0.966 14 C 0.022 3.978 15 N -0.939 5.939 16 Si 0.930 3.070 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.250 1.250 20 H 0.075 0.925 21 H 0.040 0.960 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.003 0.997 27 H 0.091 0.909 28 H 0.021 0.979 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 -8.324 -9.110 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.059 4.059 4 N -0.259 5.259 5 C -0.116 4.116 6 C -0.001 4.001 7 O -0.317 6.317 8 C -0.004 4.004 9 C -0.164 4.164 10 C 0.073 3.927 11 H 0.017 0.983 12 C -0.539 4.539 13 H 0.052 0.948 14 C -0.177 4.177 15 N -0.578 5.578 16 Si 0.755 3.245 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.174 1.174 20 H 0.094 0.906 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.022 0.978 27 H 0.109 0.891 28 H 0.039 0.961 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.586 -8.612 -8.593 13.001 hybrid contribution -0.710 1.738 -0.951 2.104 sum 3.876 -6.873 -9.544 12.384 Atomic orbital electron populations 1.21690 0.95061 1.02224 1.01270 1.21496 0.95858 0.95296 1.02042 1.22012 0.87310 0.96715 0.99896 1.61550 1.07558 1.27355 1.29389 1.22630 0.98707 0.99104 0.91203 1.23146 0.88056 0.97265 0.91674 1.87343 1.63769 1.21714 1.58896 1.22421 0.98957 0.81329 0.97729 1.21239 0.95364 1.00025 0.99775 1.18734 0.93853 0.86079 0.94009 0.98294 1.21006 1.26531 1.04565 1.01834 0.94790 1.25780 0.94148 0.98223 0.99510 1.70032 1.27953 1.20260 1.39597 0.85988 0.80116 0.78081 0.80349 1.19936 1.20922 1.17374 0.90577 0.94105 0.92964 0.91091 0.92305 0.91628 0.97831 0.89118 0.96083 0.88550 0.91121 0.93791 0.88268 0.93005 0.92077 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.91 71.98 0.71 -3.43 16 2 C -0.11 -3.54 5.96 30.59 0.18 -3.36 16 3 C 0.07 2.89 4.42 86.30 0.38 3.27 16 4 N -0.53 -22.42 4.31 -889.71 -3.83 -26.25 16 5 C 0.01 0.43 4.90 87.06 0.43 0.86 16 6 C 0.08 2.17 7.02 72.26 0.51 2.67 16 7 O -0.40 -13.82 10.29 -143.37 -1.48 -15.30 16 8 C 0.07 2.48 6.38 72.44 0.46 2.94 16 9 C -0.13 -5.32 4.92 29.07 0.14 -5.18 16 10 C 0.18 8.42 1.62 42.01 0.07 8.49 16 11 H 0.00 -0.02 3.99 -2.39 -0.01 -0.03 16 12 C -0.50 -28.13 6.23 25.60 0.16 -27.97 16 13 H 0.03 2.18 8.00 -2.91 -0.02 2.15 16 14 C 0.02 1.26 5.47 84.65 0.46 1.72 16 15 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 16 Si 0.93 43.79 26.95 68.60 1.85 45.64 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.25 -10.97 6.79 99.48 0.68 -10.29 16 20 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.97 6.59 -2.39 -0.02 1.95 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.07 3.37 5.92 -2.39 -0.01 3.36 16 26 H 0.00 0.15 8.06 -2.38 -0.02 0.13 16 27 H 0.09 2.61 6.05 -2.39 -0.01 2.59 16 28 H 0.02 0.73 6.72 -2.38 -0.02 0.71 16 29 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.42 7.15 -2.39 -0.02 1.40 16 32 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.58 8.13 -2.39 -0.02 2.56 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -63.97 267.38 1.36 -62.61 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.01 Total: 10.41 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.51 Total: -20.00 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -3.53 Total: -83.36 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -1.48 Total: -15.30 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.85 Total: 45.64 kcal Total: -63.97 1.36 -62.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.714 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds