Wall clock time and date at job start Mon Mar 30 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 N 1.46900 * 109.46984 * 175.58806 * 3 2 1 5 5 C 1.47802 * 110.99891 * 65.38860 * 4 3 2 6 6 C 1.46261 * 112.31420 * 155.84941 * 5 4 3 7 7 O 1.44520 * 111.31143 * 59.48484 * 6 5 4 8 8 C 1.39909 * 112.80736 * 280.45142 * 7 6 5 9 9 C 1.54574 * 113.22093 * 94.89579 * 8 7 6 10 10 C 1.44011 * 111.00205 * 303.41653 * 4 3 2 11 11 H 1.09004 * 108.87813 * 96.40233 * 10 4 3 12 12 C 1.50699 * 108.88155 * 337.95360 * 10 4 3 13 13 H 1.08001 * 119.99834 * 354.28251 * 12 10 4 14 14 C 1.37873 * 120.00280 * 174.28660 * 12 10 4 15 15 N 1.31520 * 119.99935 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00379 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46920 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47525 * 119.99946 * 16 14 12 19 19 H 1.48503 * 109.47053 * 239.99765 * 16 14 12 20 20 H 1.09000 * 109.47148 * 299.99886 * 1 2 3 21 21 H 1.09007 * 109.46762 * 60.00116 * 1 2 3 22 22 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47148 * 240.00114 * 2 1 3 24 24 H 1.08997 * 109.46731 * 120.00021 * 2 1 3 25 25 H 1.08993 * 109.47389 * 295.59030 * 3 2 1 26 26 H 1.09003 * 109.47235 * 55.59127 * 3 2 1 27 27 H 1.09007 * 108.91198 * 276.57525 * 5 4 3 28 28 H 1.08993 * 108.91509 * 35.11391 * 5 4 3 29 29 H 1.08999 * 109.10959 * 179.97438 * 6 5 4 30 30 H 1.08998 * 109.10795 * 299.01244 * 6 5 4 31 31 H 1.08999 * 108.73151 * 215.86524 * 8 7 6 32 32 H 1.08998 * 108.73339 * 333.93240 * 8 7 6 33 33 H 1.09005 * 109.18747 * 79.64904 * 9 8 7 34 34 H 1.08991 * 109.19227 * 198.96107 * 9 8 7 35 35 H 0.96998 * 120.00315 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5052 1.4438 0.1065 5 6 4.1238 0.8376 -1.0911 6 6 5.4941 1.3026 -1.3039 7 8 6.3376 0.9864 -0.1738 8 6 6.1770 1.8810 0.8899 9 6 5.1665 1.3902 1.9517 10 6 3.9378 0.7328 1.2818 11 1 4.1935 -0.2891 1.0017 12 6 2.8039 0.6945 2.2737 13 1 1.8925 1.2382 2.0731 14 6 2.9299 -0.0345 3.4371 15 7 4.0396 -0.6970 3.6810 16 14 1.5246 -0.0815 4.6668 17 1 0.3966 0.7411 4.1610 18 1 1.0725 -1.4842 4.8486 19 1 1.9880 0.4618 5.9689 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.7427 1.9330 -0.9268 26 1 1.6136 1.9786 0.8479 27 1 4.1327 -0.2461 -0.9740 28 1 3.5246 1.0918 -1.9653 29 1 5.8986 0.8247 -2.1962 30 1 5.4856 2.3825 -1.4518 31 1 7.1440 2.0314 1.3699 32 1 5.8328 2.8367 0.4946 33 1 5.6536 0.6618 2.6001 34 1 4.8360 2.2385 2.5509 35 1 4.1285 -1.2096 4.4997 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259972301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:35 Heat of formation + Delta-G solvation = -48.099029 kcal Electronic energy + Delta-G solvation = -15694.646540 eV Core-core repulsion = 13306.529222 eV Total energy + Delta-G solvation = -2388.117318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.70705 -38.09581 -35.01582 -33.68685 -32.74976 -29.73201 -28.35147 -26.14941 -24.54353 -23.07011 -22.12011 -20.43774 -18.32759 -17.49122 -17.08133 -16.88583 -16.02108 -15.51185 -15.21653 -15.11356 -14.41742 -14.17665 -13.78280 -13.26303 -13.08374 -12.95928 -12.85103 -12.44621 -12.27137 -12.19661 -11.98125 -11.78218 -11.50967 -11.40928 -11.00549 -10.68460 -10.45241 -10.17121 -8.88049 -8.08113 -6.12936 1.37869 1.41129 1.50681 2.42546 3.13812 3.20579 3.40126 4.24323 4.30136 4.34458 4.44311 4.52316 4.58227 4.64314 4.70912 4.75326 4.80334 4.88139 4.98999 5.01212 5.06251 5.13470 5.30010 5.37514 5.53058 5.64483 5.78842 5.81359 5.93575 6.13020 6.44662 6.53327 6.80566 7.02562 7.50984 8.99522 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.014266 C = 0.010105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.489515 B = 1962.171578 C = 2770.198614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.163 4.163 3 C 0.075 3.925 4 N -0.533 5.533 5 C 0.019 3.981 6 C 0.064 3.936 7 O -0.401 6.401 8 C 0.075 3.925 9 C -0.114 4.114 10 C 0.226 3.774 11 H -0.035 1.035 12 C -0.522 4.522 13 H 0.082 0.918 14 C 0.010 3.990 15 N -0.921 5.921 16 Si 0.945 3.055 17 H -0.260 1.260 18 H -0.287 1.287 19 H -0.286 1.286 20 H 0.044 0.956 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.014 0.986 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 4.519 -8.800 10.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.202 4.202 3 C -0.052 4.052 4 N -0.256 5.256 5 C -0.109 4.109 6 C -0.012 4.012 7 O -0.320 6.320 8 C -0.003 4.003 9 C -0.153 4.153 10 C 0.118 3.882 11 H -0.017 1.017 12 C -0.560 4.560 13 H 0.100 0.900 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.771 3.229 17 H -0.184 1.184 18 H -0.214 1.214 19 H -0.212 1.212 20 H 0.063 0.937 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.032 0.968 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.959 4.766 -8.633 10.054 hybrid contribution -0.894 -1.189 1.191 1.905 sum -2.853 3.577 -7.443 8.737 Atomic orbital electron populations 1.21588 0.94990 1.01196 1.01530 1.22360 0.96929 0.99271 1.01645 1.22106 0.87047 0.95431 1.00664 1.61862 1.07898 1.53582 1.02280 1.21736 0.97516 0.96738 0.94890 1.21880 0.89425 1.01125 0.88781 1.87654 1.62632 1.55622 1.26050 1.22242 0.98005 0.91855 0.88170 1.22462 0.96581 0.98912 0.97341 1.18697 0.92888 0.89118 0.87533 1.01720 1.22145 1.01526 1.28836 1.03517 0.89996 1.25702 0.97605 0.95703 0.99850 1.70133 1.27320 1.32657 1.26044 0.85690 0.80353 0.77534 0.79284 1.18370 1.21376 1.21194 0.93688 0.91463 0.93213 0.93915 0.91527 0.90818 0.91384 0.96798 0.88632 0.87060 0.91247 0.91222 0.92613 0.94001 0.94179 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.91 71.98 0.71 -3.50 16 2 C -0.16 -6.22 4.89 30.59 0.15 -6.07 16 3 C 0.08 2.81 4.73 86.30 0.41 3.22 16 4 N -0.53 -22.09 4.47 -889.39 -3.98 -26.06 16 5 C 0.02 0.68 4.26 84.05 0.36 1.04 16 6 C 0.06 2.04 6.38 69.91 0.45 2.48 16 7 O -0.40 -16.25 10.39 -139.88 -1.45 -17.71 16 8 C 0.07 3.02 6.20 72.52 0.45 3.47 16 9 C -0.11 -5.62 5.39 31.68 0.17 -5.45 16 10 C 0.23 11.40 1.14 45.26 0.05 11.45 16 11 H -0.03 -2.07 7.10 -2.38 -0.02 -2.08 16 12 C -0.52 -27.55 5.27 25.60 0.13 -27.42 16 13 H 0.08 4.17 4.57 -2.91 -0.01 4.15 16 14 C 0.01 0.55 5.31 84.65 0.45 1.00 16 15 N -0.92 -54.29 11.78 21.45 0.25 -54.04 16 16 Si 0.94 43.57 29.54 68.60 2.03 45.59 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.04 1.55 7.32 -2.39 -0.02 1.53 16 24 H 0.07 3.19 5.19 -2.39 -0.01 3.17 16 25 H 0.07 2.29 7.92 -2.39 -0.02 2.27 16 26 H 0.07 2.77 5.83 -2.39 -0.01 2.75 16 27 H 0.01 0.56 6.97 -2.38 -0.02 0.55 16 28 H 0.10 2.73 7.70 -2.39 -0.02 2.71 16 29 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.07 1.97 7.46 -2.39 -0.02 1.95 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.06 2.04 7.25 -2.39 -0.02 2.03 16 33 H 0.04 2.33 6.91 -2.38 -0.02 2.31 16 34 H 0.04 2.00 7.98 -2.39 -0.02 1.98 16 35 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -61.83 262.20 1.23 -60.60 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.05 Total: 11.39 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 3.33 Total: -19.78 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -3.72 Total: -80.10 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.45 Total: -17.71 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -61.83 1.23 -60.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.498 kcal (2) G-P(sol) polarization free energy of solvation -61.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds