Wall clock time and date at job start Mon Mar 30 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46739 * 2 1 4 4 N 1.46895 * 109.47273 * 119.99865 * 2 1 3 5 5 C 1.47479 * 110.99877 * 172.15145 * 4 2 1 6 6 C 1.53513 * 87.93283 * 221.29793 * 5 4 2 7 7 C 1.47486 * 110.99681 * 76.18256 * 4 2 1 8 8 H 1.08999 * 113.47788 * 23.87514 * 7 4 2 9 9 C 1.53005 * 113.47518 * 253.47014 * 7 4 2 10 10 O 1.42897 * 109.46960 * 294.99951 * 9 7 4 11 11 C 1.42900 * 113.99975 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47002 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00307 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99863 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99689 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99900 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47268 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47035 * 120.00198 * 16 14 12 19 19 H 1.48508 * 109.46856 * 239.99338 * 16 14 12 20 20 H 1.09005 * 109.46955 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47139 * 299.99959 * 1 2 3 22 22 H 1.09006 * 109.47053 * 60.00219 * 1 2 3 23 23 H 1.09008 * 109.47004 * 240.00680 * 2 1 3 24 24 H 1.09000 * 109.46882 * 185.69379 * 3 2 1 25 25 H 1.09007 * 109.47558 * 305.68971 * 3 2 1 26 26 H 1.08997 * 109.47256 * 65.69143 * 3 2 1 27 27 H 1.09001 * 113.47893 * 336.06172 * 5 4 2 28 28 H 1.08999 * 113.47848 * 106.53165 * 5 4 2 29 29 H 1.09004 * 114.17312 * 139.67225 * 6 5 4 30 30 H 1.08996 * 114.17482 * 272.38073 * 6 5 4 31 31 H 1.08996 * 109.46879 * 54.99915 * 9 7 4 32 32 H 1.08997 * 109.46817 * 175.00038 * 9 7 4 33 33 H 1.08998 * 109.47201 * 299.99969 * 11 10 9 34 34 H 1.08997 * 109.46949 * 60.00194 * 11 10 9 35 35 H 0.97000 * 119.99402 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.4818 -0.8770 1.1431 6 6 3.2695 -2.2884 1.7086 7 6 1.8858 -2.1543 1.0573 8 1 1.8586 -2.4891 0.0204 9 6 0.7552 -2.7476 1.9004 10 8 1.0537 -2.5743 3.2871 11 6 0.0553 -3.0962 4.1662 12 6 0.4710 -2.8593 5.5953 13 1 1.4043 -2.3606 5.8107 14 6 -0.3400 -3.2804 6.6279 15 7 -1.4764 -3.8882 6.3655 16 14 0.1755 -2.9875 8.3992 17 1 1.4862 -2.2900 8.4245 18 1 -0.8447 -2.1499 9.0796 19 1 0.2948 -4.2903 9.1019 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8901 24 1 3.1251 1.4442 -0.1020 25 1 1.5958 1.9850 -0.8347 26 1 1.7622 1.9261 0.9365 27 1 3.8816 -0.8712 0.1291 28 1 4.0290 -0.2173 1.8164 29 1 3.9038 -3.0506 1.2560 30 1 3.2477 -2.3344 2.7973 31 1 -0.1795 -2.2396 1.6637 32 1 0.6571 -3.8106 1.6800 33 1 -0.8938 -2.5950 3.9764 34 1 -0.0578 -4.1663 3.9929 35 1 -2.0471 -4.1840 7.0920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260032568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:01 Heat of formation + Delta-G solvation = -21.085992 kcal Electronic energy + Delta-G solvation = -14643.741973 eV Core-core repulsion = 12256.796028 eV Total energy + Delta-G solvation = -2386.945945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15956 -36.27374 -33.97661 -32.61011 -29.03308 -27.30048 -26.88690 -26.25018 -22.60212 -22.19727 -20.58574 -19.23245 -16.45197 -16.20816 -15.19403 -15.08440 -14.91671 -14.24099 -14.05528 -13.76591 -12.78953 -12.62598 -12.41763 -12.04122 -11.87587 -11.60110 -11.52108 -11.08638 -10.88941 -10.81131 -10.74445 -10.61999 -10.29603 -10.10996 -9.74580 -8.99974 -8.73351 -8.55701 -8.05853 -6.05114 -4.05767 3.32984 3.39242 3.46208 4.11540 4.40207 4.72994 4.91749 4.96698 5.05781 5.18463 5.31542 5.34762 5.48591 5.54233 5.68423 5.76688 5.84510 5.90517 5.98091 6.02223 6.14022 6.17729 6.21542 6.28940 6.43833 6.64846 6.72554 7.19798 7.42355 7.52075 7.86933 8.23882 8.69414 9.09544 9.58935 11.06714 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041255 B = 0.006530 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.546209 B = 4287.120760 C = 4366.112285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 C -0.142 4.142 4 N -0.447 5.447 5 C -0.004 4.004 6 C -0.132 4.132 7 C 0.027 3.973 8 H 0.077 0.923 9 C 0.081 3.919 10 O -0.381 6.381 11 C 0.195 3.805 12 C -0.508 4.508 13 H 0.067 0.933 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.906 3.094 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.055 0.945 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.003 0.997 34 H 0.002 0.998 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 5.548 -13.230 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.199 4.199 4 N -0.170 5.170 5 C -0.133 4.133 6 C -0.170 4.170 7 C -0.082 4.082 8 H 0.095 0.905 9 C 0.003 3.997 10 O -0.300 6.300 11 C 0.120 3.880 12 C -0.547 4.547 13 H 0.085 0.915 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.350 5.953 -12.538 15.263 hybrid contribution 0.058 -0.409 -0.042 0.415 sum 6.408 5.544 -12.580 15.168 Atomic orbital electron populations 1.21794 0.94165 1.02156 1.01892 1.22222 0.96597 0.95903 0.92255 1.21778 1.00451 0.95411 1.02297 1.69160 1.07092 1.07304 1.33452 1.23675 0.91565 0.98247 0.99770 1.23126 0.94786 0.95376 1.03711 1.23487 0.97016 0.89980 0.97756 0.90506 1.21952 0.95470 0.97045 0.85275 1.87862 1.47549 1.81878 1.12734 1.20163 0.86700 0.92674 0.88424 1.21102 1.06391 1.37680 0.89496 0.91512 1.24952 0.94842 0.95189 0.99652 1.69985 1.11664 1.39990 1.32369 0.86303 0.78719 0.77871 0.83737 1.19479 1.20904 1.20925 0.92611 0.91513 0.92786 0.94217 0.93053 0.92581 0.91580 0.92353 0.89971 0.91582 0.86756 0.94287 0.94509 0.97929 0.98026 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.21 37.16 0.34 -1.52 16 2 C 0.04 0.51 2.27 -67.72 -0.15 0.36 16 3 C -0.14 -1.62 9.13 37.16 0.34 -1.28 16 4 N -0.45 -7.07 5.92 -228.49 -1.35 -8.43 16 5 C 0.00 -0.05 6.79 -7.54 -0.05 -0.10 16 6 C -0.13 -2.02 7.83 -26.20 -0.21 -2.22 16 7 C 0.03 0.42 3.06 -71.42 -0.22 0.21 16 8 H 0.08 1.04 7.67 -51.93 -0.40 0.64 16 9 C 0.08 1.57 6.22 37.16 0.23 1.80 16 10 O -0.38 -9.36 8.77 -35.23 -0.31 -9.67 16 11 C 0.19 5.48 5.69 36.01 0.20 5.69 16 12 C -0.51 -15.27 9.43 -34.44 -0.32 -15.60 16 13 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 14 C 0.05 1.60 5.46 -17.81 -0.10 1.50 16 15 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 16 Si 0.91 22.25 29.54 -169.99 -5.02 17.22 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H 0.05 0.76 6.54 -51.93 -0.34 0.42 16 21 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.48 7.56 -51.92 -0.39 0.09 16 24 H 0.05 0.54 7.62 -51.93 -0.40 0.15 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.67 7.80 -51.93 -0.41 0.26 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 2.11 6.91 -51.93 -0.36 1.76 16 31 H 0.04 0.76 6.85 -51.93 -0.36 0.41 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -31.50 284.27 -7.59 -39.09 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -6.00 Total: -4.60 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.62 Total: -35.15 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.31 Total: -9.67 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.50 -7.59 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.005 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds