Wall clock time and date at job start Mon Mar 30 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46739 * 2 1 4 4 N 1.46895 * 109.47273 * 119.99865 * 2 1 3 5 5 C 1.47479 * 110.99877 * 172.15145 * 4 2 1 6 6 C 1.53513 * 87.93283 * 221.29793 * 5 4 2 7 7 C 1.47486 * 110.99681 * 76.18256 * 4 2 1 8 8 H 1.08999 * 113.47788 * 23.87514 * 7 4 2 9 9 C 1.53005 * 113.47518 * 253.47014 * 7 4 2 10 10 O 1.42897 * 109.46960 * 294.99951 * 9 7 4 11 11 C 1.42900 * 113.99975 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47002 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00307 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99863 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99689 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99900 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47268 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47035 * 120.00198 * 16 14 12 19 19 H 1.48508 * 109.46856 * 239.99338 * 16 14 12 20 20 H 1.09005 * 109.46955 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47139 * 299.99959 * 1 2 3 22 22 H 1.09006 * 109.47053 * 60.00219 * 1 2 3 23 23 H 1.09008 * 109.47004 * 240.00680 * 2 1 3 24 24 H 1.09000 * 109.46882 * 185.69379 * 3 2 1 25 25 H 1.09007 * 109.47558 * 305.68971 * 3 2 1 26 26 H 1.08997 * 109.47256 * 65.69143 * 3 2 1 27 27 H 1.09001 * 113.47893 * 336.06172 * 5 4 2 28 28 H 1.08999 * 113.47848 * 106.53165 * 5 4 2 29 29 H 1.09004 * 114.17312 * 139.67225 * 6 5 4 30 30 H 1.08996 * 114.17482 * 272.38073 * 6 5 4 31 31 H 1.08996 * 109.46879 * 54.99915 * 9 7 4 32 32 H 1.08997 * 109.46817 * 175.00038 * 9 7 4 33 33 H 1.08998 * 109.47201 * 299.99969 * 11 10 9 34 34 H 1.08997 * 109.46949 * 60.00194 * 11 10 9 35 35 H 0.97000 * 119.99402 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.4818 -0.8770 1.1431 6 6 3.2695 -2.2884 1.7086 7 6 1.8858 -2.1543 1.0573 8 1 1.8586 -2.4891 0.0204 9 6 0.7552 -2.7476 1.9004 10 8 1.0537 -2.5743 3.2871 11 6 0.0553 -3.0962 4.1662 12 6 0.4710 -2.8593 5.5953 13 1 1.4043 -2.3606 5.8107 14 6 -0.3400 -3.2804 6.6279 15 7 -1.4764 -3.8882 6.3655 16 14 0.1755 -2.9875 8.3992 17 1 1.4862 -2.2900 8.4245 18 1 -0.8447 -2.1499 9.0796 19 1 0.2948 -4.2903 9.1019 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8901 24 1 3.1251 1.4442 -0.1020 25 1 1.5958 1.9850 -0.8347 26 1 1.7622 1.9261 0.9365 27 1 3.8816 -0.8712 0.1291 28 1 4.0290 -0.2173 1.8164 29 1 3.9038 -3.0506 1.2560 30 1 3.2477 -2.3344 2.7973 31 1 -0.1795 -2.2396 1.6637 32 1 0.6571 -3.8106 1.6800 33 1 -0.8938 -2.5950 3.9764 34 1 -0.0578 -4.1663 3.9929 35 1 -2.0471 -4.1840 7.0920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260032568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:01 Heat of formation + Delta-G solvation = -43.457937 kcal Electronic energy + Delta-G solvation = -14644.712094 eV Core-core repulsion = 12256.796028 eV Total energy + Delta-G solvation = -2387.916065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34775 -38.16893 -35.14436 -34.76130 -30.66153 -28.88283 -28.18313 -27.60021 -24.50350 -23.84475 -21.63063 -20.46805 -18.66965 -17.57548 -16.92449 -16.67603 -16.33412 -16.05300 -15.32727 -15.22842 -14.50814 -13.75572 -13.67107 -13.43045 -13.22119 -13.05903 -12.86199 -12.74752 -12.70783 -12.57169 -12.10725 -11.88251 -11.76501 -11.49616 -11.29302 -11.06580 -10.83476 -10.15616 -9.66509 -8.31808 -6.43659 1.39348 1.41211 1.56102 2.35248 2.98047 3.01873 3.23522 3.67528 3.86810 3.97766 4.06617 4.31792 4.36444 4.43913 4.53823 4.56500 4.62154 4.77722 4.79834 4.87223 4.92601 4.95248 5.03990 5.09893 5.17807 5.23955 5.31869 5.47222 5.54744 5.57635 5.98133 6.32633 6.58276 6.87115 7.28665 8.81100 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041255 B = 0.006530 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.546209 B = 4287.120760 C = 4366.112285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 C -0.137 4.137 4 N -0.484 5.484 5 C 0.009 3.991 6 C -0.136 4.136 7 C 0.032 3.968 8 H 0.111 0.889 9 C 0.070 3.930 10 O -0.390 6.390 11 C 0.210 3.790 12 C -0.543 4.543 13 H 0.060 0.940 14 C 0.004 3.996 15 N -0.933 5.933 16 Si 0.984 3.016 17 H -0.265 1.265 18 H -0.272 1.272 19 H -0.269 1.269 20 H 0.044 0.956 21 H 0.040 0.960 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.044 0.956 33 H -0.022 1.022 34 H -0.016 1.016 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.891 6.063 -13.951 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.195 4.195 4 N -0.208 5.208 5 C -0.119 4.119 6 C -0.173 4.173 7 C -0.077 4.077 8 H 0.128 0.872 9 C -0.007 4.007 10 O -0.310 6.310 11 C 0.135 3.865 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.807 3.193 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.194 1.194 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.063 0.937 33 H -0.005 1.005 34 H 0.002 0.998 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.569 6.472 -13.285 16.603 hybrid contribution -0.361 -0.570 0.092 0.681 sum 7.208 5.902 -13.193 16.151 Atomic orbital electron populations 1.21797 0.94756 1.01442 1.01905 1.22317 0.96163 0.96735 0.91908 1.21748 1.01245 0.94374 1.02091 1.69116 1.08790 1.07258 1.35672 1.23657 0.90360 0.96611 1.01260 1.23028 0.95156 0.97712 1.01442 1.23530 0.95324 0.90366 0.98480 0.87153 1.22288 0.97301 0.98008 0.83122 1.87845 1.46408 1.81636 1.15099 1.19768 0.86438 0.91262 0.89043 1.21398 1.06775 1.38998 0.90884 0.92151 1.25984 0.94500 0.94147 1.04732 1.70090 1.12624 1.40114 1.34386 0.85126 0.78633 0.78427 0.77153 1.18855 1.19709 1.19449 0.93684 0.94043 0.90193 0.92106 0.91971 0.90532 0.93594 0.89118 0.90306 0.88873 0.90785 0.94935 0.93748 1.00466 0.99813 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.21 71.98 0.66 -2.89 16 2 C 0.04 0.89 2.27 44.92 0.10 0.99 16 3 C -0.14 -2.82 9.13 71.98 0.66 -2.16 16 4 N -0.48 -14.76 5.92 -876.81 -5.19 -19.95 16 5 C 0.01 0.24 6.79 83.58 0.57 0.80 16 6 C -0.14 -3.98 7.83 30.94 0.24 -3.73 16 7 C 0.03 0.97 3.06 42.19 0.13 1.10 16 8 H 0.11 2.62 7.67 -2.39 -0.02 2.60 16 9 C 0.07 2.79 6.22 71.98 0.45 3.23 16 10 O -0.39 -19.95 8.77 -148.98 -1.31 -21.25 16 11 C 0.21 12.36 5.69 71.24 0.41 12.77 16 12 C -0.54 -33.53 9.43 25.60 0.24 -33.29 16 13 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 14 C 0.00 0.26 5.46 84.65 0.46 0.73 16 15 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 16 Si 0.98 45.62 29.54 68.60 2.03 47.64 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H 0.04 1.20 6.54 -2.38 -0.02 1.18 16 21 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.06 1.22 7.56 -2.38 -0.02 1.20 16 24 H 0.06 1.13 7.62 -2.39 -0.02 1.12 16 25 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.70 7.80 -2.39 -0.02 1.68 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.80 6.91 -2.39 -0.02 2.78 16 31 H 0.03 1.32 6.85 -2.39 -0.02 1.30 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H -0.02 -1.40 8.14 -2.39 -0.02 -1.41 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -69.21 284.27 0.76 -68.45 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.03 Total: 4.88 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 3.92 Total: -22.45 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -4.90 Total: -77.27 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.31 Total: -21.25 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.21 0.76 -68.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.991 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds