Wall clock time and date at job start Mon Mar 30 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47509 * 2 1 4 4 N 1.46903 * 109.47075 * 119.99808 * 2 1 3 5 5 C 1.47963 * 110.99871 * 75.63626 * 4 2 1 6 6 C 1.53935 * 86.17651 * 137.58668 * 5 4 2 7 7 C 1.47951 * 111.00324 * 174.99940 * 4 2 1 8 8 H 1.09004 * 113.85763 * 336.74477 * 7 4 2 9 9 C 1.52999 * 113.76194 * 108.09850 * 7 4 2 10 10 O 1.42899 * 109.46889 * 61.06765 * 9 7 4 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46972 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99865 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00309 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00236 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47160 * 89.99730 * 16 14 12 18 18 H 1.48503 * 109.47061 * 209.99752 * 16 14 12 19 19 H 1.48500 * 109.46598 * 329.99398 * 16 14 12 20 20 H 1.09000 * 109.46775 * 300.00496 * 1 2 3 21 21 H 1.09001 * 109.46866 * 60.00079 * 1 2 3 22 22 H 1.08991 * 109.47518 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47094 * 239.99163 * 2 1 3 24 24 H 1.09001 * 109.46992 * 299.99844 * 3 2 1 25 25 H 1.08998 * 109.47391 * 59.99182 * 3 2 1 26 26 H 1.09001 * 109.47642 * 180.02562 * 3 2 1 27 27 H 1.09002 * 113.75772 * 23.26755 * 5 4 2 28 28 H 1.08996 * 113.85774 * 251.91398 * 5 4 2 29 29 H 1.09008 * 113.73109 * 221.92160 * 6 5 4 30 30 H 1.09000 * 113.82912 * 90.65427 * 6 5 4 31 31 H 1.08997 * 109.46848 * 301.06684 * 9 7 4 32 32 H 1.08997 * 109.47286 * 181.06782 * 9 7 4 33 33 H 1.09004 * 109.47054 * 299.99711 * 11 10 9 34 34 H 1.09000 * 109.47187 * 59.99767 * 11 10 9 35 35 H 0.96992 * 120.00510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.8733 -2.1584 1.0623 6 6 3.2776 -2.2534 1.6857 7 6 3.4937 -0.8174 1.1751 8 1 3.9239 -0.7671 0.1748 9 6 4.2062 0.0927 2.1776 10 8 3.7935 -0.2442 3.5035 11 6 4.4033 0.5517 4.5219 12 6 3.8981 0.1130 5.8722 13 1 3.1831 -0.6932 5.9454 14 6 4.3494 0.7401 7.0141 15 7 3.9081 0.3577 8.1925 16 14 5.5865 2.1340 6.8874 17 1 4.8654 3.4260 6.7617 18 1 6.4334 2.1565 8.1071 19 1 6.4443 1.9275 5.6929 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5140 -0.8899 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1301 1.4425 -0.0005 27 1 1.8278 -2.5004 0.0283 28 1 1.0865 -2.5832 1.6856 29 1 3.9214 -2.9910 1.2065 30 1 3.2722 -2.3364 2.7726 31 1 3.9506 1.1318 1.9703 32 1 5.2842 -0.0412 2.0875 33 1 5.4855 0.4276 4.4806 34 1 4.1515 1.6002 4.3631 35 1 4.2253 0.7991 8.9958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260032569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:05 Heat of formation + Delta-G solvation = -18.280582 kcal Electronic energy + Delta-G solvation = -14693.838757 eV Core-core repulsion = 12307.014463 eV Total energy + Delta-G solvation = -2386.824293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01927 -36.47351 -33.94726 -32.55284 -29.37478 -27.61164 -26.95423 -26.42383 -22.78227 -21.77849 -20.61176 -19.20158 -16.84546 -16.23742 -15.39654 -15.21293 -14.87908 -14.35557 -13.97580 -13.91675 -12.73399 -12.65933 -12.52904 -12.19314 -12.00535 -11.86074 -11.53947 -11.34935 -10.95794 -10.87139 -10.78423 -10.58852 -10.25790 -10.07675 -9.78949 -9.09727 -8.76018 -8.50259 -8.36206 -6.06283 -4.04351 3.28166 3.34744 3.36503 3.98736 4.40053 4.63965 4.84335 4.92099 5.02280 5.08820 5.25288 5.32135 5.44420 5.50314 5.65793 5.70923 5.82214 5.86724 5.91098 5.92628 6.03253 6.13038 6.16035 6.26214 6.32584 6.62762 6.66039 6.71367 7.07667 7.37433 7.66860 8.12422 8.75270 9.06658 9.53754 11.06921 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040531 B = 0.007021 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.665234 B = 3986.964266 C = 4134.530446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.040 3.960 3 C -0.146 4.146 4 N -0.453 5.453 5 C 0.001 3.999 6 C -0.134 4.134 7 C 0.031 3.969 8 H 0.080 0.920 9 C 0.078 3.922 10 O -0.365 6.365 11 C 0.169 3.831 12 C -0.514 4.514 13 H 0.083 0.917 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.267 1.267 20 H 0.065 0.935 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.000 1.000 34 H -0.004 1.004 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 -1.018 -17.613 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.203 4.203 4 N -0.177 5.177 5 C -0.128 4.128 6 C -0.172 4.172 7 C -0.078 4.078 8 H 0.097 0.903 9 C 0.000 4.000 10 O -0.283 6.283 11 C 0.093 3.907 12 C -0.552 4.552 13 H 0.101 0.899 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.192 1.192 20 H 0.084 0.916 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.287 -0.759 -16.845 17.016 hybrid contribution 1.180 0.735 -0.832 1.621 sum -1.106 -0.024 -17.677 17.712 Atomic orbital electron populations 1.21728 0.94303 1.01716 1.01919 1.22195 0.96387 0.95980 0.92306 1.21847 1.00955 0.95425 1.02079 1.68728 1.07717 1.07261 1.34005 1.23806 0.99221 0.90372 0.99412 1.23326 0.95157 0.94731 1.03980 1.23484 0.90261 0.96643 0.97457 0.90254 1.22004 0.95766 0.96734 0.85492 1.87939 1.68292 1.59755 1.12350 1.20568 0.92296 0.90177 0.87639 1.20896 1.26673 1.20047 0.87546 0.89938 1.24764 0.96306 0.96935 0.95018 1.69875 1.44082 1.42022 0.97611 0.86863 0.81933 0.83060 0.77960 1.20009 1.20855 1.19159 0.91599 0.92785 0.92936 0.94314 0.92679 0.91471 0.92759 0.92230 0.89472 0.91916 0.86928 0.94119 0.94229 0.98265 0.98619 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.32 37.16 0.35 -1.26 16 2 C 0.04 0.51 2.27 -67.71 -0.15 0.36 16 3 C -0.15 -1.79 8.81 37.16 0.33 -1.47 16 4 N -0.45 -7.03 5.76 -222.77 -1.28 -8.31 16 5 C 0.00 0.01 7.35 -2.77 -0.02 -0.01 16 6 C -0.13 -2.00 7.69 -25.80 -0.20 -2.20 16 7 C 0.03 0.46 2.80 -66.66 -0.19 0.28 16 8 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 9 C 0.08 1.43 6.15 37.16 0.23 1.65 16 10 O -0.36 -8.62 8.83 -35.23 -0.31 -8.94 16 11 C 0.17 4.39 4.76 36.01 0.17 4.56 16 12 C -0.51 -15.56 9.99 -34.44 -0.34 -15.90 16 13 H 0.08 2.73 8.06 -52.48 -0.42 2.31 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 16 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.58 7.73 -51.93 -0.40 0.18 16 23 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.67 6.55 -51.93 -0.34 0.33 16 27 H 0.06 0.67 7.70 -51.93 -0.40 0.27 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.11 2.06 6.94 -51.93 -0.36 1.70 16 31 H 0.04 0.73 7.06 -51.93 -0.37 0.36 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 34 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 35 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 281.02 15.07 4.23 4.23 Total: -1.00 -31.93 281.02 -7.17 -39.10 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.99 Total: -3.93 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.51 Total: -35.64 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.31 Total: -8.94 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.93 -7.17 -39.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.818 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds