Wall clock time and date at job start Mon Mar 30 2020 02:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47509 * 2 1 4 4 N 1.46903 * 109.47075 * 119.99808 * 2 1 3 5 5 C 1.47963 * 110.99871 * 75.63626 * 4 2 1 6 6 C 1.53935 * 86.17651 * 137.58668 * 5 4 2 7 7 C 1.47951 * 111.00324 * 174.99940 * 4 2 1 8 8 H 1.09004 * 113.85763 * 336.74477 * 7 4 2 9 9 C 1.52999 * 113.76194 * 108.09850 * 7 4 2 10 10 O 1.42899 * 109.46889 * 61.06765 * 9 7 4 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46972 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99865 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00309 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00236 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47160 * 89.99730 * 16 14 12 18 18 H 1.48503 * 109.47061 * 209.99752 * 16 14 12 19 19 H 1.48500 * 109.46598 * 329.99398 * 16 14 12 20 20 H 1.09000 * 109.46775 * 300.00496 * 1 2 3 21 21 H 1.09001 * 109.46866 * 60.00079 * 1 2 3 22 22 H 1.08991 * 109.47518 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47094 * 239.99163 * 2 1 3 24 24 H 1.09001 * 109.46992 * 299.99844 * 3 2 1 25 25 H 1.08998 * 109.47391 * 59.99182 * 3 2 1 26 26 H 1.09001 * 109.47642 * 180.02562 * 3 2 1 27 27 H 1.09002 * 113.75772 * 23.26755 * 5 4 2 28 28 H 1.08996 * 113.85774 * 251.91398 * 5 4 2 29 29 H 1.09008 * 113.73109 * 221.92160 * 6 5 4 30 30 H 1.09000 * 113.82912 * 90.65427 * 6 5 4 31 31 H 1.08997 * 109.46848 * 301.06684 * 9 7 4 32 32 H 1.08997 * 109.47286 * 181.06782 * 9 7 4 33 33 H 1.09004 * 109.47054 * 299.99711 * 11 10 9 34 34 H 1.09000 * 109.47187 * 59.99767 * 11 10 9 35 35 H 0.96992 * 120.00510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.8733 -2.1584 1.0623 6 6 3.2776 -2.2534 1.6857 7 6 3.4937 -0.8174 1.1751 8 1 3.9239 -0.7671 0.1748 9 6 4.2062 0.0927 2.1776 10 8 3.7935 -0.2442 3.5035 11 6 4.4033 0.5517 4.5219 12 6 3.8981 0.1130 5.8722 13 1 3.1831 -0.6932 5.9454 14 6 4.3494 0.7401 7.0141 15 7 3.9081 0.3577 8.1925 16 14 5.5865 2.1340 6.8874 17 1 4.8654 3.4260 6.7617 18 1 6.4334 2.1565 8.1071 19 1 6.4443 1.9275 5.6929 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5140 -0.8899 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1301 1.4425 -0.0005 27 1 1.8278 -2.5004 0.0283 28 1 1.0865 -2.5832 1.6856 29 1 3.9214 -2.9910 1.2065 30 1 3.2722 -2.3364 2.7726 31 1 3.9506 1.1318 1.9703 32 1 5.2842 -0.0412 2.0875 33 1 5.4855 0.4276 4.4806 34 1 4.1515 1.6002 4.3631 35 1 4.2253 0.7991 8.9958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260032569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:03 Heat of formation + Delta-G solvation = -41.759253 kcal Electronic energy + Delta-G solvation = -14694.856868 eV Core-core repulsion = 12307.014463 eV Total energy + Delta-G solvation = -2387.842405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15969 -38.22770 -35.06433 -34.72261 -31.02091 -29.28245 -28.10093 -27.56221 -24.08916 -23.88323 -21.61568 -20.39953 -19.03745 -17.57948 -16.94236 -16.70543 -16.31797 -16.04108 -15.30943 -15.22229 -14.65454 -13.94976 -13.67292 -13.52978 -13.36353 -13.08392 -12.89882 -12.67074 -12.63046 -12.56326 -11.95988 -11.83038 -11.70509 -11.47166 -11.39846 -11.14190 -10.90535 -10.25029 -9.55851 -8.36566 -6.43834 1.32140 1.35500 1.46406 2.29447 2.89422 2.95828 3.14085 3.71876 3.85063 3.98033 4.08808 4.32527 4.35189 4.45673 4.50110 4.56299 4.60606 4.67670 4.78856 4.79911 4.93214 4.95349 5.01302 5.04064 5.10340 5.25211 5.32235 5.43877 5.48977 5.59646 5.96527 6.34551 6.60400 6.82857 7.20880 8.80798 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040531 B = 0.007021 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.665234 B = 3986.964266 C = 4134.530446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.038 3.962 3 C -0.143 4.143 4 N -0.492 5.492 5 C 0.011 3.989 6 C -0.138 4.138 7 C 0.037 3.963 8 H 0.116 0.884 9 C 0.067 3.933 10 O -0.389 6.389 11 C 0.180 3.820 12 C -0.541 4.541 13 H 0.028 0.972 14 C 0.012 3.988 15 N -0.943 5.943 16 Si 0.955 3.045 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.245 1.245 20 H 0.042 0.958 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.011 0.989 34 H 0.003 0.997 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 0.093 -20.188 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.201 4.201 4 N -0.216 5.216 5 C -0.118 4.118 6 C -0.176 4.176 7 C -0.072 4.072 8 H 0.133 0.867 9 C -0.010 4.010 10 O -0.308 6.308 11 C 0.104 3.896 12 C -0.579 4.579 13 H 0.047 0.953 14 C -0.186 4.186 15 N -0.583 5.583 16 Si 0.777 3.223 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.169 1.169 20 H 0.061 0.939 21 H 0.095 0.905 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.963 0.336 -19.443 19.470 hybrid contribution 0.665 0.306 -0.041 0.733 sum -0.298 0.641 -19.484 19.497 Atomic orbital electron populations 1.21713 0.93838 1.01932 1.01892 1.22291 0.96803 0.95955 0.91974 1.21839 1.00945 0.95343 1.01964 1.68689 1.08043 1.08654 1.36264 1.23799 0.97784 0.89390 1.00787 1.23213 0.97069 0.95794 1.01518 1.23533 0.90244 0.95464 0.97977 0.86677 1.22367 0.97321 0.97899 0.83405 1.87922 1.68724 1.59719 1.14416 1.20259 0.92527 0.90428 0.86351 1.21152 1.26566 1.19411 0.90778 0.95343 1.25843 0.98567 1.00091 0.94074 1.70034 1.45691 1.43776 0.98770 0.85609 0.78936 0.78636 0.79154 1.18645 1.19630 1.16871 0.93886 0.90517 0.92621 0.92115 0.90300 0.94055 0.92709 0.89005 0.90615 0.89240 0.91400 0.93797 0.92529 0.97150 0.97920 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.32 71.98 0.67 -2.24 16 2 C 0.04 0.88 2.27 44.91 0.10 0.98 16 3 C -0.14 -3.23 8.81 71.98 0.63 -2.59 16 4 N -0.49 -14.65 5.76 -858.71 -4.95 -19.60 16 5 C 0.01 0.27 7.35 86.41 0.64 0.91 16 6 C -0.14 -4.00 7.69 31.24 0.24 -3.76 16 7 C 0.04 1.04 2.80 45.02 0.13 1.16 16 8 H 0.12 2.45 7.86 -2.38 -0.02 2.43 16 9 C 0.07 2.37 6.15 71.98 0.44 2.81 16 10 O -0.39 -18.70 8.83 -148.98 -1.32 -20.02 16 11 C 0.18 9.40 4.76 71.24 0.34 9.74 16 12 C -0.54 -34.06 9.99 25.60 0.26 -33.80 16 13 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 14 C 0.01 0.72 5.47 84.65 0.46 1.19 16 15 N -0.94 -60.67 13.96 21.45 0.30 -60.37 16 16 Si 0.96 44.50 27.47 68.60 1.88 46.38 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 20 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.05 1.13 7.73 -2.39 -0.02 1.11 16 23 H 0.06 1.15 7.68 -2.38 -0.02 1.13 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.20 6.55 -2.39 -0.02 1.19 16 27 H 0.09 1.75 7.70 -2.39 -0.02 1.73 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.07 2.59 6.94 -2.39 -0.02 2.58 16 31 H 0.04 1.51 7.06 -2.39 -0.02 1.49 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.01 0.53 7.20 -2.38 -0.02 0.52 16 34 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 35 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -71.96 281.02 0.81 -71.15 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.98 Total: 8.06 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 3.91 Total: -25.60 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -4.65 Total: -79.97 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.32 Total: -20.02 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -71.96 0.81 -71.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.391 kcal (2) G-P(sol) polarization free energy of solvation -71.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds