Wall clock time and date at job start Mon Mar 30 2020 02:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46886 * 2 1 4 4 N 1.46904 * 109.47420 * 119.99599 * 2 1 3 5 5 C 1.46846 * 110.99942 * 298.95752 * 4 2 1 6 6 C 1.53035 * 109.52744 * 174.16069 * 5 4 2 7 7 C 1.53123 * 109.27774 * 59.17321 * 6 5 4 8 8 C 1.53114 * 109.16198 * 302.35270 * 7 6 5 9 9 O 1.42904 * 109.50358 * 297.71229 * 8 7 6 10 10 C 1.50696 * 109.50126 * 177.59670 * 8 7 6 11 11 H 1.08003 * 119.99625 * 240.19388 * 10 8 7 12 12 C 1.37871 * 120.00478 * 60.19635 * 10 8 7 13 13 N 1.31518 * 120.00022 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00480 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47165 * 89.99642 * 14 12 10 16 16 H 1.48497 * 109.47609 * 209.99753 * 14 12 10 17 17 H 1.48506 * 109.46758 * 330.00015 * 14 12 10 18 18 C 1.46844 * 111.00328 * 174.74598 * 4 2 1 19 19 H 1.09005 * 109.47351 * 300.00072 * 1 2 3 20 20 H 1.09000 * 109.47415 * 60.00412 * 1 2 3 21 21 H 1.09005 * 109.46914 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47372 * 239.99914 * 2 1 3 23 23 H 1.09000 * 109.47216 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46939 * 299.99241 * 3 2 1 25 25 H 1.08995 * 109.47921 * 59.99687 * 3 2 1 26 26 H 1.09008 * 109.46456 * 294.17536 * 5 4 2 27 27 H 1.09003 * 109.46474 * 54.14041 * 5 4 2 28 28 H 1.08995 * 109.50534 * 179.12351 * 6 5 4 29 29 H 1.09011 * 109.49854 * 299.24031 * 6 5 4 30 30 H 1.09000 * 109.52219 * 182.44440 * 7 6 5 31 31 H 1.09001 * 109.57074 * 62.29217 * 7 6 5 32 32 H 0.96700 * 113.99850 * 299.80676 * 9 8 7 33 33 H 0.97000 * 120.00379 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46271 * 305.85568 * 18 4 2 35 35 H 1.09008 * 109.46154 * 65.83367 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5693 -0.0122 2.4205 6 6 1.9727 -0.8377 3.6444 7 6 3.4947 -1.0046 3.6623 8 6 3.9427 -1.6714 2.3589 9 8 3.3632 -2.9744 2.2659 10 6 5.4452 -1.7858 2.3428 11 1 6.0153 -1.3010 1.5641 12 6 6.0920 -2.5094 3.3220 13 7 5.3978 -3.0995 4.2705 14 14 7.9546 -2.6507 3.3025 15 1 8.5438 -1.5352 4.0859 16 1 8.3592 -3.9463 3.9047 17 1 8.4414 -2.5826 1.9011 18 6 3.4822 -0.8217 1.1723 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 2.0316 0.9733 2.4788 27 1 0.4850 0.0963 2.3970 28 1 1.6520 -0.3249 4.5511 29 1 1.4997 -1.8186 3.5936 30 1 3.7828 -1.6284 4.5084 31 1 3.9681 -0.0269 3.7528 32 1 3.6125 -3.5681 2.9873 33 1 5.8529 -3.6083 4.9596 34 1 3.7872 -1.3011 0.2422 35 1 3.9355 0.1676 1.2367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:32 Heat of formation + Delta-G solvation = -56.439129 kcal Electronic energy + Delta-G solvation = -15536.276960 eV Core-core repulsion = 13147.797988 eV Total energy + Delta-G solvation = -2388.478972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -38.84807 -35.82681 -32.67435 -31.96200 -30.01655 -28.68267 -26.93186 -25.04274 -23.35634 -21.55299 -19.63343 -18.21525 -16.80721 -15.42642 -14.95311 -14.59603 -14.15622 -13.77497 -13.37716 -13.25001 -12.80735 -12.58082 -11.78510 -11.70126 -11.57078 -11.25710 -11.20462 -10.96753 -10.90625 -10.69610 -10.40199 -10.15108 -10.08151 -9.84736 -9.54522 -8.91312 -8.49336 -7.84784 -7.44509 -6.10901 -4.22201 3.24952 3.32298 3.36115 4.32768 4.61396 5.13356 5.21205 5.40664 5.59687 5.71714 5.80214 5.86395 5.97383 6.05904 6.11669 6.18155 6.22652 6.36627 6.43004 6.51393 6.57667 6.65939 6.79684 6.83981 7.11185 7.27578 7.59433 7.72258 7.86140 7.93776 8.09028 8.29214 8.80319 9.46739 9.75078 10.91626 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047930 B = 0.009420 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.041761 B = 2971.684067 C = 3197.628487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 C -0.186 4.186 4 N -0.520 5.520 5 C 0.058 3.942 6 C -0.114 4.114 7 C -0.138 4.138 8 C 0.260 3.740 9 O -0.577 6.577 10 C -0.537 4.537 11 H 0.057 0.943 12 C 0.070 3.930 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.079 3.921 19 H 0.053 0.947 20 H 0.050 0.950 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.036 0.964 32 H 0.373 0.627 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 5.899 -3.644 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 C -0.245 4.245 4 N -0.243 5.243 5 C -0.070 4.070 6 C -0.152 4.152 7 C -0.176 4.176 8 C 0.219 3.781 9 O -0.384 6.384 10 C -0.576 4.576 11 H 0.075 0.925 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.048 4.048 19 H 0.072 0.928 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.222 0.778 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.726 5.567 -4.033 9.617 hybrid contribution 1.738 0.641 0.594 1.945 sum -4.989 6.208 -3.439 8.675 Atomic orbital electron populations 1.21845 0.95115 1.02131 1.00797 1.21701 0.95224 0.92002 0.94759 1.22491 1.01788 0.98763 1.01482 1.62146 1.12617 1.49184 1.00390 1.22095 0.98732 0.95071 0.91090 1.21589 0.99172 0.99843 0.94626 1.22227 0.91751 1.00223 1.03417 1.18528 0.89836 0.81157 0.88538 1.86195 1.74243 1.24906 1.53106 1.21757 0.92420 1.32343 1.11051 0.92484 1.24963 0.98698 0.94732 0.94706 1.69618 1.35561 1.34109 1.14440 0.86505 0.85198 0.77451 0.78276 1.20683 1.21063 1.19867 1.22112 0.84799 0.97486 1.00382 0.92832 0.93073 0.91964 0.90559 0.92439 0.92897 0.92629 0.95969 0.92061 0.93870 0.91461 0.88977 0.94557 0.77762 0.92419 0.91861 0.95188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.00 37.15 0.33 -1.59 16 2 C 0.07 1.16 2.96 -67.71 -0.20 0.96 16 3 C -0.19 -2.69 8.50 37.16 0.32 -2.37 16 4 N -0.52 -10.23 4.52 -226.69 -1.03 -11.26 16 5 C 0.06 1.07 4.63 -3.84 -0.02 1.06 16 6 C -0.11 -2.34 5.94 -26.65 -0.16 -2.50 16 7 C -0.14 -3.29 4.73 -26.61 -0.13 -3.41 16 8 C 0.26 6.57 0.68 -91.70 -0.06 6.51 16 9 O -0.58 -15.50 12.29 -35.23 -0.43 -15.93 16 10 C -0.54 -14.66 8.25 -34.44 -0.28 -14.95 16 11 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 12 C 0.07 1.89 5.22 -17.82 -0.09 1.79 16 13 N -0.90 -24.20 9.72 55.43 0.54 -23.66 16 14 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.08 1.78 3.94 -3.84 -0.02 1.76 16 19 H 0.05 0.71 6.30 -51.93 -0.33 0.38 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 23 H 0.06 0.89 6.66 -51.93 -0.35 0.54 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.80 6.52 -51.93 -0.34 0.46 16 26 H 0.02 0.41 6.62 -51.92 -0.34 0.06 16 27 H 0.06 1.01 6.04 -51.93 -0.31 0.70 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.46 7.80 -51.92 -0.40 1.05 16 30 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.37 10.22 7.14 45.56 0.33 10.54 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 35 H 0.03 0.66 6.74 -51.92 -0.35 0.31 16 LS Contribution 264.13 15.07 3.98 3.98 Total: -1.00 -27.50 264.13 -7.18 -34.68 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.91 Total: 9.01 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -0.31 Total: -12.74 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.49 Total: -34.92 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.43 Total: -15.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.50 -7.18 -34.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.761 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds