Wall clock time and date at job start Mon Mar 30 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46886 * 2 1 4 4 N 1.46904 * 109.47420 * 119.99599 * 2 1 3 5 5 C 1.46846 * 110.99942 * 298.95752 * 4 2 1 6 6 C 1.53035 * 109.52744 * 174.16069 * 5 4 2 7 7 C 1.53123 * 109.27774 * 59.17321 * 6 5 4 8 8 C 1.53114 * 109.16198 * 302.35270 * 7 6 5 9 9 O 1.42904 * 109.50358 * 297.71229 * 8 7 6 10 10 C 1.50696 * 109.50126 * 177.59670 * 8 7 6 11 11 H 1.08003 * 119.99625 * 240.19388 * 10 8 7 12 12 C 1.37871 * 120.00478 * 60.19635 * 10 8 7 13 13 N 1.31518 * 120.00022 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00480 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47165 * 89.99642 * 14 12 10 16 16 H 1.48497 * 109.47609 * 209.99753 * 14 12 10 17 17 H 1.48506 * 109.46758 * 330.00015 * 14 12 10 18 18 C 1.46844 * 111.00328 * 174.74598 * 4 2 1 19 19 H 1.09005 * 109.47351 * 300.00072 * 1 2 3 20 20 H 1.09000 * 109.47415 * 60.00412 * 1 2 3 21 21 H 1.09005 * 109.46914 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47372 * 239.99914 * 2 1 3 23 23 H 1.09000 * 109.47216 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46939 * 299.99241 * 3 2 1 25 25 H 1.08995 * 109.47921 * 59.99687 * 3 2 1 26 26 H 1.09008 * 109.46456 * 294.17536 * 5 4 2 27 27 H 1.09003 * 109.46474 * 54.14041 * 5 4 2 28 28 H 1.08995 * 109.50534 * 179.12351 * 6 5 4 29 29 H 1.09011 * 109.49854 * 299.24031 * 6 5 4 30 30 H 1.09000 * 109.52219 * 182.44440 * 7 6 5 31 31 H 1.09001 * 109.57074 * 62.29217 * 7 6 5 32 32 H 0.96700 * 113.99850 * 299.80676 * 9 8 7 33 33 H 0.97000 * 120.00379 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46271 * 305.85568 * 18 4 2 35 35 H 1.09008 * 109.46154 * 65.83367 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5693 -0.0122 2.4205 6 6 1.9727 -0.8377 3.6444 7 6 3.4947 -1.0046 3.6623 8 6 3.9427 -1.6714 2.3589 9 8 3.3632 -2.9744 2.2659 10 6 5.4452 -1.7858 2.3428 11 1 6.0153 -1.3010 1.5641 12 6 6.0920 -2.5094 3.3220 13 7 5.3978 -3.0995 4.2705 14 14 7.9546 -2.6507 3.3025 15 1 8.5438 -1.5352 4.0859 16 1 8.3592 -3.9463 3.9047 17 1 8.4414 -2.5826 1.9011 18 6 3.4822 -0.8217 1.1723 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 2.0316 0.9733 2.4788 27 1 0.4850 0.0963 2.3970 28 1 1.6520 -0.3249 4.5511 29 1 1.4997 -1.8186 3.5936 30 1 3.7828 -1.6284 4.5084 31 1 3.9681 -0.0269 3.7528 32 1 3.6125 -3.5681 2.9873 33 1 5.8529 -3.6083 4.9596 34 1 3.7872 -1.3011 0.2422 35 1 3.9355 0.1676 1.2367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:30 Heat of formation + Delta-G solvation = -75.657523 kcal Electronic energy + Delta-G solvation = -15537.110332 eV Core-core repulsion = 13147.797988 eV Total energy + Delta-G solvation = -2389.312344 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46560 -37.58449 -34.34025 -34.03869 -31.63126 -30.44243 -28.08573 -26.95576 -24.98016 -23.26367 -21.20990 -19.92145 -18.77283 -17.01377 -16.92353 -16.26380 -15.67743 -15.37892 -15.08958 -14.83514 -14.45264 -13.97682 -13.47493 -13.34759 -13.10429 -12.88532 -12.78108 -12.62352 -12.48451 -12.16723 -12.11566 -11.99942 -11.71684 -11.43316 -11.38835 -10.74745 -10.53730 -9.87737 -8.96054 -8.14708 -6.34499 1.39022 1.41239 1.50808 2.38579 3.05404 3.14830 3.99868 4.05673 4.17457 4.26198 4.38727 4.44712 4.55444 4.65494 4.71347 4.78891 4.86596 4.90661 4.94130 4.98081 5.09506 5.17711 5.28538 5.37432 5.42725 5.46336 5.57997 5.77510 6.07317 6.14334 6.38109 6.48786 6.73050 7.37312 7.61742 8.85449 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047930 B = 0.009420 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.041761 B = 2971.684067 C = 3197.628487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 C -0.179 4.179 4 N -0.535 5.535 5 C 0.062 3.938 6 C -0.109 4.109 7 C -0.130 4.130 8 C 0.246 3.754 9 O -0.585 6.585 10 C -0.567 4.567 11 H 0.048 0.952 12 C 0.030 3.970 13 N -0.910 5.910 14 Si 0.958 3.042 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.275 1.275 18 C 0.091 3.909 19 H 0.060 0.940 20 H 0.077 0.923 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.366 0.634 33 H 0.268 0.732 34 H 0.048 0.952 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 7.054 -4.031 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 C -0.238 4.238 4 N -0.259 5.259 5 C -0.066 4.066 6 C -0.147 4.147 7 C -0.169 4.169 8 C 0.206 3.794 9 O -0.392 6.392 10 C -0.605 4.605 11 H 0.066 0.934 12 C -0.170 4.170 13 N -0.550 5.550 14 Si 0.783 3.217 15 H -0.200 1.200 16 H -0.205 1.205 17 H -0.199 1.199 18 C -0.037 4.037 19 H 0.079 0.921 20 H 0.096 0.904 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.214 0.786 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.527 6.733 -4.428 11.027 hybrid contribution 1.965 0.268 0.700 2.103 sum -5.562 7.001 -3.728 9.688 Atomic orbital electron populations 1.21795 0.92771 1.02085 1.02483 1.21849 0.97005 0.92595 0.92782 1.22407 1.00646 0.97756 1.02972 1.62086 1.10529 1.50990 1.02324 1.22101 1.00355 0.94576 0.89559 1.21532 0.96264 0.99866 0.97059 1.22043 0.94367 0.98923 1.01551 1.18759 0.89184 0.80893 0.90535 1.86188 1.74415 1.25727 1.52887 1.22042 0.93869 1.33240 1.11353 0.93374 1.25652 1.02716 0.94329 0.94316 1.69716 1.36892 1.33918 1.14512 0.85574 0.80338 0.77638 0.78118 1.20034 1.20452 1.19942 1.21830 0.87044 0.96630 0.98220 0.92149 0.90370 0.92884 0.91218 0.94144 0.90244 0.92257 0.95316 0.89261 0.91392 0.93023 0.91601 0.95211 0.78574 0.92218 0.93388 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.00 71.98 0.65 -2.56 16 2 C 0.07 1.98 2.96 44.91 0.13 2.11 16 3 C -0.18 -4.71 8.50 71.98 0.61 -4.10 16 4 N -0.54 -20.46 4.52 -871.13 -3.94 -24.40 16 5 C 0.06 2.15 4.63 86.33 0.40 2.55 16 6 C -0.11 -4.35 5.94 30.65 0.18 -4.17 16 7 C -0.13 -6.27 4.73 30.67 0.15 -6.13 16 8 C 0.25 12.66 0.68 -11.49 -0.01 12.65 16 9 O -0.59 -32.12 12.29 -148.98 -1.83 -33.95 16 10 C -0.57 -31.52 8.25 25.60 0.21 -31.31 16 11 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 12 C 0.03 1.61 5.22 84.65 0.44 2.05 16 13 N -0.91 -49.73 9.72 21.45 0.21 -49.52 16 14 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C 0.09 4.08 3.94 86.32 0.34 4.42 16 19 H 0.06 1.36 6.30 -2.38 -0.02 1.35 16 20 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 21 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 23 H 0.04 1.19 6.66 -2.39 -0.02 1.17 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.51 6.52 -2.39 -0.02 1.50 16 26 H 0.03 0.98 6.62 -2.38 -0.02 0.96 16 27 H 0.09 2.64 6.04 -2.39 -0.01 2.63 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.05 2.21 7.80 -2.38 -0.02 2.19 16 30 H 0.07 3.49 6.16 -2.39 -0.01 3.48 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.37 20.65 7.14 -74.06 -0.53 20.12 16 33 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 34 H 0.05 2.25 8.07 -2.39 -0.02 2.23 16 35 H 0.03 1.35 6.74 -2.38 -0.02 1.33 16 Total: -1.00 -58.70 264.13 0.10 -58.60 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.54 Total: 28.59 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 3.10 Total: -24.47 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -3.73 Total: -73.92 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.83 Total: -33.95 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -58.70 0.10 -58.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.061 kcal (2) G-P(sol) polarization free energy of solvation -58.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds