Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99696 * 2 1 3 5 5 C 1.46846 * 111.00099 * 50.78982 * 4 2 1 6 6 C 1.53031 * 109.52529 * 185.83754 * 5 4 2 7 7 C 1.53120 * 109.27834 * 300.82506 * 6 5 4 8 8 C 1.53115 * 109.16327 * 57.65022 * 7 6 5 9 9 O 1.42902 * 109.50406 * 62.28965 * 8 7 6 10 10 C 1.50694 * 109.53788 * 182.38406 * 8 7 6 11 11 H 1.08007 * 120.00142 * 119.82689 * 10 8 7 12 12 C 1.37880 * 120.00383 * 299.82887 * 10 8 7 13 13 N 1.31512 * 119.99581 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00299 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47221 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46951 * 119.99635 * 14 12 10 17 17 H 1.48493 * 109.46876 * 239.99757 * 14 12 10 18 18 C 1.46847 * 110.99782 * 175.00052 * 4 2 1 19 19 H 1.09001 * 109.47375 * 300.00092 * 1 2 3 20 20 H 1.09002 * 109.47045 * 60.00167 * 1 2 3 21 21 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47280 * 240.00073 * 2 1 3 23 23 H 1.09001 * 109.47142 * 59.99766 * 3 2 1 24 24 H 1.09004 * 109.47006 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47097 * 299.99801 * 3 2 1 26 26 H 1.09000 * 109.46441 * 305.85960 * 5 4 2 27 27 H 1.09001 * 109.45916 * 65.81996 * 5 4 2 28 28 H 1.08990 * 109.50497 * 180.88142 * 6 5 4 29 29 H 1.09003 * 109.53405 * 60.78014 * 6 5 4 30 30 H 1.08997 * 109.52136 * 297.74853 * 7 6 5 31 31 H 1.08997 * 109.52346 * 177.55902 * 7 6 5 32 32 H 0.96704 * 114.00387 * 60.19382 * 9 8 7 33 33 H 0.97007 * 119.99907 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46534 * 294.17923 * 18 4 2 35 35 H 1.09002 * 109.46105 * 54.14972 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3779 -2.0049 1.3483 6 6 1.8002 -2.6328 2.6785 7 6 3.3238 -2.7827 2.7056 8 6 3.9677 -1.4088 2.5002 9 8 3.5966 -0.5426 3.5745 10 6 5.4672 -1.5549 2.4670 11 1 6.0197 -1.2553 1.5887 12 6 6.1340 -2.0712 3.5579 13 7 5.4613 -2.4357 4.6276 14 14 7.9927 -2.2530 3.5164 15 1 8.5077 -1.7751 2.2081 16 1 8.5933 -1.4472 4.6096 17 1 8.3544 -3.6817 3.6982 18 6 3.4826 -0.8164 1.1752 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.6766 1.9564 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 0.2948 -1.8836 1.3316 27 1 1.6833 -2.6536 0.5273 28 1 1.3362 -3.6136 2.7815 29 1 1.4829 -1.9919 3.5011 30 1 3.6379 -3.4551 1.9074 31 1 3.6327 -3.1895 3.6685 32 1 3.8728 -0.8566 4.4464 33 1 5.9305 -2.7985 5.3952 34 1 3.7782 -1.4706 0.3550 35 1 3.9282 0.1682 1.0329 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = -74.818213 kcal Electronic energy + Delta-G solvation = -15503.078110 eV Core-core repulsion = 13113.802161 eV Total energy + Delta-G solvation = -2389.275949 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35597 -37.49169 -34.49064 -34.05339 -31.62496 -30.71514 -28.28876 -26.63379 -24.92319 -22.86684 -21.13797 -20.33023 -18.83917 -17.20741 -16.95388 -16.27951 -15.72761 -15.44578 -14.97572 -14.60903 -14.44965 -13.75469 -13.58111 -13.34713 -13.07139 -12.96559 -12.82067 -12.54836 -12.46816 -12.27036 -12.07763 -12.03603 -11.72947 -11.44243 -11.28669 -10.75868 -10.53918 -9.86753 -9.01996 -8.15229 -6.34864 1.38009 1.41054 1.51549 2.38306 3.04682 3.09850 4.01779 4.06762 4.10939 4.31541 4.33233 4.47026 4.53097 4.65684 4.71036 4.82275 4.90055 4.92476 4.94046 5.02035 5.08493 5.16767 5.26729 5.39208 5.42614 5.46128 5.57605 5.76704 6.06841 6.13678 6.37067 6.47352 6.72715 7.36975 7.61746 8.85162 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045675 B = 0.009599 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.875223 B = 2916.338949 C = 3227.901082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 C -0.138 4.138 4 N -0.535 5.535 5 C 0.060 3.940 6 C -0.108 4.108 7 C -0.132 4.132 8 C 0.247 3.753 9 O -0.584 6.584 10 C -0.566 4.566 11 H 0.047 0.953 12 C 0.030 3.970 13 N -0.910 5.910 14 Si 0.958 3.042 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.088 3.912 19 H 0.057 0.943 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.031 0.969 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.366 0.634 33 H 0.268 0.732 34 H 0.021 0.979 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 1.551 -6.981 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.042 4.042 3 C -0.195 4.195 4 N -0.261 5.261 5 C -0.068 4.068 6 C -0.146 4.146 7 C -0.170 4.170 8 C 0.207 3.793 9 O -0.391 6.391 10 C -0.605 4.605 11 H 0.066 0.934 12 C -0.170 4.170 13 N -0.550 5.550 14 Si 0.784 3.216 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.040 4.040 19 H 0.076 0.924 20 H 0.097 0.903 21 H 0.080 0.920 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.214 0.786 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.050 2.118 -6.917 10.823 hybrid contribution 1.846 -1.085 0.019 2.141 sum -6.204 1.034 -6.898 9.335 Atomic orbital electron populations 1.21885 0.92635 1.02367 1.02697 1.21775 0.96938 0.95267 0.90189 1.21805 1.00247 0.95207 1.02258 1.61950 1.05168 1.20196 1.38751 1.22159 0.99647 0.88748 0.96231 1.21516 0.96048 0.99485 0.97534 1.22056 0.94444 0.99084 1.01419 1.18732 0.90457 0.86067 0.83998 1.86185 1.82218 1.52106 1.18569 1.22070 0.94222 1.42761 1.01408 0.93420 1.25653 1.02725 0.93671 0.94955 1.69722 1.36816 1.43325 1.05159 0.85520 0.80326 0.77782 0.78007 1.19804 1.20385 1.20279 1.21887 0.87338 0.98975 0.95808 0.92376 0.90289 0.92018 0.95069 0.92824 0.94282 0.90080 0.88721 0.96001 0.91328 0.92886 0.95290 0.91529 0.78572 0.92215 0.96054 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.65 71.98 0.62 -2.67 16 2 C 0.07 2.02 2.69 44.91 0.12 2.14 16 3 C -0.14 -4.00 9.10 71.98 0.66 -3.34 16 4 N -0.54 -20.65 4.41 -871.13 -3.84 -24.49 16 5 C 0.06 2.10 5.00 86.32 0.43 2.53 16 6 C -0.11 -4.30 5.94 30.64 0.18 -4.12 16 7 C -0.13 -6.35 4.73 30.67 0.15 -6.21 16 8 C 0.25 12.75 0.68 -11.49 -0.01 12.74 16 9 O -0.58 -31.95 12.29 -148.98 -1.83 -33.78 16 10 C -0.57 -31.56 8.25 25.60 0.21 -31.35 16 11 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 12 C 0.03 1.62 5.22 84.66 0.44 2.06 16 13 N -0.91 -49.69 9.72 21.45 0.21 -49.48 16 14 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 C 0.09 3.99 4.20 86.32 0.36 4.35 16 19 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.06 1.38 6.19 -2.39 -0.01 1.37 16 22 H 0.03 0.95 8.13 -2.39 -0.02 0.93 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 24 H 0.04 1.26 6.40 -2.38 -0.02 1.24 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 2.80 5.83 -2.39 -0.01 2.78 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 2.26 7.80 -2.39 -0.02 2.24 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 3.54 6.17 -2.39 -0.01 3.52 16 32 H 0.37 20.61 7.14 -74.05 -0.53 20.08 16 33 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 2.70 6.18 -2.39 -0.01 2.69 16 Total: -1.00 -58.92 266.77 0.26 -58.66 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.53 Total: 27.75 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.17 Total: -23.86 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -3.63 Total: -73.97 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.83 Total: -33.78 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -58.92 0.26 -58.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.157 kcal (2) G-P(sol) polarization free energy of solvation -58.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds