Wall clock time and date at job start Mon Mar 30 2020 02:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46784 * 2 1 4 4 N 1.46897 * 109.47450 * 120.00174 * 2 1 3 5 5 C 1.47845 * 110.99822 * 39.64547 * 4 2 1 6 6 C 1.54903 * 104.79589 * 146.36741 * 5 4 2 7 7 C 1.55402 * 101.74185 * 323.01737 * 6 5 4 8 8 C 1.47440 * 110.99988 * 160.48672 * 4 2 1 9 9 H 1.09006 * 109.88831 * 117.17332 * 8 4 2 10 10 C 1.52998 * 109.88953 * 356.14820 * 8 4 2 11 11 O 1.42901 * 109.47329 * 291.51551 * 10 8 4 12 12 C 1.34922 * 117.00309 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99876 * 359.97438 * 12 11 10 14 14 C 1.38639 * 120.00174 * 180.02562 * 12 11 10 15 15 N 1.31585 * 119.99870 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00185 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47517 * 89.99719 * 16 14 12 18 18 H 1.48498 * 109.47157 * 210.00016 * 16 14 12 19 19 H 1.48506 * 109.47258 * 329.99712 * 16 14 12 20 20 H 1.08994 * 109.47002 * 304.28678 * 1 2 3 21 21 H 1.08998 * 109.47484 * 64.29166 * 1 2 3 22 22 H 1.09005 * 109.47043 * 184.29291 * 1 2 3 23 23 H 1.09003 * 109.46407 * 240.00560 * 2 1 3 24 24 H 1.09004 * 109.47155 * 294.18416 * 3 2 1 25 25 H 1.08991 * 109.47439 * 54.18374 * 3 2 1 26 26 H 1.09002 * 109.46962 * 174.18806 * 3 2 1 27 27 H 1.09008 * 110.36800 * 265.19310 * 5 4 2 28 28 H 1.08993 * 110.37472 * 27.42203 * 5 4 2 29 29 H 1.08998 * 110.99225 * 81.01677 * 6 5 4 30 30 H 1.08999 * 110.99381 * 204.83563 * 6 5 4 31 31 H 1.09010 * 110.67578 * 277.17935 * 7 6 5 32 32 H 1.08998 * 110.84657 * 153.86326 * 7 6 5 33 33 H 1.08995 * 109.47445 * 171.51430 * 10 8 4 34 34 H 1.09000 * 109.47212 * 51.51461 * 10 8 4 35 35 H 0.96993 * 120.00096 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.1944 -1.8821 1.4984 6 6 2.1850 -2.9099 2.1000 7 6 3.4631 -2.6489 1.2554 8 6 3.4191 -1.1235 1.0263 9 1 4.0548 -0.6206 1.7551 10 6 3.8930 -0.7961 -0.3911 11 8 3.2028 -1.6258 -1.3278 12 6 3.5076 -1.4623 -2.6319 13 1 4.2440 -0.7292 -2.9265 14 6 2.8748 -2.2344 -3.5938 15 7 1.9772 -3.1272 -3.2349 16 14 3.2962 -2.0075 -5.3994 17 1 4.4146 -2.9137 -5.7645 18 1 2.1075 -2.3290 -6.2294 19 1 3.7016 -0.5992 -5.6399 20 1 -0.3633 0.5789 0.8490 21 1 -0.3634 0.4458 -0.9259 22 1 -0.3633 -1.0248 0.0769 23 1 1.8932 -0.5138 -0.8901 24 1 1.7641 1.9254 -0.9375 25 1 1.5941 1.9855 0.8332 26 1 3.1250 1.4443 0.1041 27 1 0.4189 -1.6334 2.2231 28 1 0.7474 -2.2733 0.5846 29 1 2.3680 -2.7047 3.1547 30 1 1.8243 -3.9287 1.9589 31 1 3.4129 -3.1828 0.3063 32 1 4.3585 -2.9297 1.8099 33 1 4.9652 -0.9770 -0.4667 34 1 3.6849 0.2510 -0.6111 35 1 1.5342 -3.6672 -3.9079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260353196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:21 Heat of formation + Delta-G solvation = -15.502872 kcal Electronic energy + Delta-G solvation = -15626.003734 eV Core-core repulsion = 13239.299891 eV Total energy + Delta-G solvation = -2386.703843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37282 -35.77925 -33.71596 -31.84357 -29.85824 -28.44103 -26.33200 -24.90301 -23.65278 -21.24076 -20.15336 -18.27481 -17.59071 -16.02648 -15.38815 -14.93450 -14.56893 -13.87808 -13.44767 -12.94058 -12.76384 -12.31257 -12.10458 -11.60311 -11.52461 -11.29312 -11.25810 -10.97807 -10.56857 -10.49186 -10.40136 -10.29171 -10.15954 -10.00421 -9.87621 -9.32175 -9.07424 -8.02695 -7.34857 -5.99362 -3.62542 3.28214 3.31893 3.34956 4.27534 4.64622 5.23046 5.30097 5.35343 5.59998 5.69412 5.76295 5.83186 5.93556 6.06898 6.16047 6.22821 6.28802 6.32701 6.40885 6.42209 6.49440 6.50353 6.56558 6.62924 6.73764 6.81845 6.92849 7.15606 7.32243 7.47813 7.76350 7.90621 8.39808 9.44677 10.10277 11.20629 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.010898 C = 0.010029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.201595 B = 2568.613708 C = 2791.201557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.023 3.977 3 C -0.137 4.137 4 N -0.517 5.517 5 C 0.046 3.954 6 C -0.127 4.127 7 C -0.134 4.134 8 C 0.077 3.923 9 H 0.078 0.922 10 C 0.035 3.965 11 O -0.280 6.280 12 C -0.364 4.364 13 H 0.061 0.939 14 C 0.027 3.973 15 N -0.886 5.886 16 Si 0.921 3.079 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.276 1.276 20 H 0.043 0.957 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.126 0.874 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.022 0.978 34 H 0.051 0.949 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 3.821 7.278 8.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.194 4.194 4 N -0.242 5.242 5 C -0.082 4.082 6 C -0.165 4.165 7 C -0.172 4.172 8 C -0.031 4.031 9 H 0.096 0.904 10 C -0.043 4.043 11 O -0.195 6.195 12 C -0.443 4.443 13 H 0.079 0.921 14 C -0.172 4.172 15 N -0.529 5.529 16 Si 0.748 3.252 17 H -0.208 1.208 18 H -0.209 1.209 19 H -0.201 1.201 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.143 0.857 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.430 3.944 7.667 8.633 hybrid contribution 0.476 -0.228 -1.619 1.703 sum 0.046 3.716 6.048 7.099 Atomic orbital electron populations 1.21933 0.96028 1.01584 1.00486 1.22660 0.94407 0.95220 0.96094 1.21948 1.00778 0.96389 1.00289 1.63853 1.01380 1.22974 1.36015 1.22961 0.95902 0.89858 0.99451 1.22672 0.96277 0.98843 0.98723 1.22804 0.96764 0.96342 1.01301 1.22456 0.90710 0.95003 0.94965 0.90428 1.22941 0.95045 0.96181 0.90123 1.85592 1.60760 1.58484 1.14706 1.20786 1.22306 1.20201 0.81052 0.92119 1.24899 0.97159 0.96763 0.98337 1.70003 1.26720 1.23293 1.32845 0.86026 0.77717 0.78174 0.83240 1.20793 1.20944 1.20073 0.93754 0.92961 0.92414 0.85684 0.93145 0.93636 0.92474 0.91761 0.92284 0.92030 0.91570 0.88812 0.92375 0.95947 0.93117 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.74 37.16 0.32 -2.26 16 2 C 0.02 0.46 2.20 -67.71 -0.15 0.32 16 3 C -0.14 -2.39 8.67 37.16 0.32 -2.07 16 4 N -0.52 -9.82 5.02 -215.44 -1.08 -10.90 16 5 C 0.05 0.84 5.29 -2.30 -0.01 0.82 16 6 C -0.13 -2.11 7.08 -24.45 -0.17 -2.29 16 7 C -0.13 -2.50 6.38 -24.77 -0.16 -2.66 16 8 C 0.08 1.47 3.62 -66.73 -0.24 1.23 16 9 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 10 C 0.03 0.76 4.85 37.16 0.18 0.94 16 11 O -0.28 -7.49 6.01 -16.49 -0.10 -7.59 16 12 C -0.36 -10.31 9.77 30.88 0.30 -10.01 16 13 H 0.06 1.65 7.77 -52.49 -0.41 1.24 16 14 C 0.03 0.77 5.49 -17.51 -0.10 0.67 16 15 N -0.89 -26.77 13.67 55.48 0.76 -26.01 16 16 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 1.07 5.85 -51.93 -0.30 0.77 16 23 H 0.13 3.08 4.01 -52.24 -0.21 2.87 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.00 5.77 -51.93 -0.30 0.70 16 27 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 28 H 0.06 1.23 6.42 -51.93 -0.33 0.90 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 2.12 6.82 -51.92 -0.35 1.77 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 1.08 4.01 -51.93 -0.21 0.87 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 268.04 15.07 4.04 4.04 Total: -1.00 -29.85 268.04 -6.59 -36.43 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.48 Total: 2.58 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 0.30 Total: -15.30 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.32 Total: -36.91 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.10 Total: -7.59 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.85 -6.59 -36.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.929 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds