Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46784 * 2 1 4 4 N 1.46897 * 109.47450 * 120.00174 * 2 1 3 5 5 C 1.47845 * 110.99822 * 39.64547 * 4 2 1 6 6 C 1.54903 * 104.79589 * 146.36741 * 5 4 2 7 7 C 1.55402 * 101.74185 * 323.01737 * 6 5 4 8 8 C 1.47440 * 110.99988 * 160.48672 * 4 2 1 9 9 H 1.09006 * 109.88831 * 117.17332 * 8 4 2 10 10 C 1.52998 * 109.88953 * 356.14820 * 8 4 2 11 11 O 1.42901 * 109.47329 * 291.51551 * 10 8 4 12 12 C 1.34922 * 117.00309 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99876 * 359.97438 * 12 11 10 14 14 C 1.38639 * 120.00174 * 180.02562 * 12 11 10 15 15 N 1.31585 * 119.99870 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00185 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47517 * 89.99719 * 16 14 12 18 18 H 1.48498 * 109.47157 * 210.00016 * 16 14 12 19 19 H 1.48506 * 109.47258 * 329.99712 * 16 14 12 20 20 H 1.08994 * 109.47002 * 304.28678 * 1 2 3 21 21 H 1.08998 * 109.47484 * 64.29166 * 1 2 3 22 22 H 1.09005 * 109.47043 * 184.29291 * 1 2 3 23 23 H 1.09003 * 109.46407 * 240.00560 * 2 1 3 24 24 H 1.09004 * 109.47155 * 294.18416 * 3 2 1 25 25 H 1.08991 * 109.47439 * 54.18374 * 3 2 1 26 26 H 1.09002 * 109.46962 * 174.18806 * 3 2 1 27 27 H 1.09008 * 110.36800 * 265.19310 * 5 4 2 28 28 H 1.08993 * 110.37472 * 27.42203 * 5 4 2 29 29 H 1.08998 * 110.99225 * 81.01677 * 6 5 4 30 30 H 1.08999 * 110.99381 * 204.83563 * 6 5 4 31 31 H 1.09010 * 110.67578 * 277.17935 * 7 6 5 32 32 H 1.08998 * 110.84657 * 153.86326 * 7 6 5 33 33 H 1.08995 * 109.47445 * 171.51430 * 10 8 4 34 34 H 1.09000 * 109.47212 * 51.51461 * 10 8 4 35 35 H 0.96993 * 120.00096 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.1944 -1.8821 1.4984 6 6 2.1850 -2.9099 2.1000 7 6 3.4631 -2.6489 1.2554 8 6 3.4191 -1.1235 1.0263 9 1 4.0548 -0.6206 1.7551 10 6 3.8930 -0.7961 -0.3911 11 8 3.2028 -1.6258 -1.3278 12 6 3.5076 -1.4623 -2.6319 13 1 4.2440 -0.7292 -2.9265 14 6 2.8748 -2.2344 -3.5938 15 7 1.9772 -3.1272 -3.2349 16 14 3.2962 -2.0075 -5.3994 17 1 4.4146 -2.9137 -5.7645 18 1 2.1075 -2.3290 -6.2294 19 1 3.7016 -0.5992 -5.6399 20 1 -0.3633 0.5789 0.8490 21 1 -0.3634 0.4458 -0.9259 22 1 -0.3633 -1.0248 0.0769 23 1 1.8932 -0.5138 -0.8901 24 1 1.7641 1.9254 -0.9375 25 1 1.5941 1.9855 0.8332 26 1 3.1250 1.4443 0.1041 27 1 0.4189 -1.6334 2.2231 28 1 0.7474 -2.2733 0.5846 29 1 2.3680 -2.7047 3.1547 30 1 1.8243 -3.9287 1.9589 31 1 3.4129 -3.1828 0.3063 32 1 4.3585 -2.9297 1.8099 33 1 4.9652 -0.9770 -0.4667 34 1 3.6849 0.2510 -0.6111 35 1 1.5342 -3.6672 -3.9079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260353196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -35.519353 kcal Electronic energy + Delta-G solvation = -15626.871713 eV Core-core repulsion = 13239.299891 eV Total energy + Delta-G solvation = -2387.571822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95252 -37.67879 -35.19894 -33.94001 -31.51817 -29.90285 -27.81304 -26.87637 -25.46625 -22.73829 -21.65092 -19.94502 -19.57688 -17.73221 -17.11873 -16.65548 -16.25323 -15.67395 -14.96879 -14.72161 -14.28405 -13.92443 -13.86520 -13.20966 -13.05447 -12.98464 -12.81180 -12.79043 -12.18508 -12.04782 -12.01446 -11.92214 -11.74831 -11.58222 -11.40524 -11.16343 -10.94945 -10.06432 -8.97596 -8.15930 -5.83060 1.38033 1.42626 1.51610 2.31556 3.11481 3.20046 3.63353 3.87439 4.08786 4.11624 4.30533 4.33871 4.43997 4.54146 4.62853 4.73550 4.79034 4.81241 4.86776 4.99163 5.03540 5.04047 5.08453 5.13506 5.23152 5.26267 5.30606 5.43111 5.59730 5.71165 6.20866 6.25386 6.33659 7.27633 8.05922 9.06848 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.010898 C = 0.010029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.201595 B = 2568.613708 C = 2791.201557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.020 3.980 3 C -0.129 4.129 4 N -0.507 5.507 5 C 0.044 3.956 6 C -0.118 4.118 7 C -0.134 4.134 8 C 0.076 3.924 9 H 0.107 0.893 10 C 0.030 3.970 11 O -0.304 6.304 12 C -0.375 4.375 13 H 0.065 0.935 14 C -0.033 4.033 15 N -0.931 5.931 16 Si 0.994 3.006 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.262 1.262 20 H 0.068 0.932 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.021 0.979 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.021 0.979 34 H 0.057 0.943 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 4.921 8.287 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.186 4.186 4 N -0.232 5.232 5 C -0.084 4.084 6 C -0.155 4.155 7 C -0.172 4.172 8 C -0.032 4.032 9 H 0.125 0.875 10 C -0.047 4.047 11 O -0.220 6.220 12 C -0.454 4.454 13 H 0.083 0.917 14 C -0.227 4.227 15 N -0.576 5.576 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.186 1.186 20 H 0.087 0.913 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.039 0.961 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.001 5.060 8.693 10.058 hybrid contribution 0.366 -0.547 -1.859 1.972 sum 0.368 4.512 6.834 8.198 Atomic orbital electron populations 1.21870 0.94911 1.01267 1.01433 1.22534 0.95509 0.96245 0.94517 1.21856 1.00716 0.94849 1.01213 1.64000 1.01318 1.22960 1.34936 1.23017 0.96758 0.90119 0.98476 1.22677 0.94386 0.98611 0.99874 1.22728 0.99214 0.95569 0.99681 1.22603 0.91308 0.95595 0.93684 0.87489 1.23172 0.94690 0.95966 0.90874 1.85614 1.61876 1.59864 1.14621 1.21204 1.21991 1.19984 0.82222 0.91711 1.25986 0.97030 0.96440 1.03217 1.70175 1.28291 1.24655 1.34456 0.84921 0.77583 0.78817 0.76988 1.19947 1.20623 1.18585 0.91295 0.93178 0.93649 0.90382 0.93103 0.91538 0.92562 0.89288 0.96064 0.88824 0.91271 0.93751 0.89699 0.96060 0.92554 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.74 71.98 0.63 -4.28 16 2 C 0.02 0.78 2.20 44.92 0.10 0.88 16 3 C -0.13 -4.32 8.67 71.98 0.62 -3.69 16 4 N -0.51 -18.54 5.02 -835.54 -4.20 -22.74 16 5 C 0.04 1.56 5.29 86.77 0.46 2.02 16 6 C -0.12 -3.70 7.08 32.07 0.23 -3.47 16 7 C -0.13 -4.89 6.38 31.87 0.20 -4.68 16 8 C 0.08 2.82 3.62 45.26 0.16 2.99 16 9 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 10 C 0.03 1.32 4.85 71.98 0.35 1.67 16 11 O -0.30 -16.82 6.01 -81.91 -0.49 -17.31 16 12 C -0.38 -21.72 9.77 67.92 0.66 -21.05 16 13 H 0.07 3.57 7.77 -2.91 -0.02 3.54 16 14 C -0.03 -1.91 5.49 84.83 0.47 -1.44 16 15 N -0.93 -58.18 13.67 21.61 0.30 -57.89 16 16 Si 0.99 45.13 29.55 68.60 2.03 47.15 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.04 1.71 5.85 -2.38 -0.01 1.69 16 23 H 0.08 3.96 4.01 -7.36 -0.03 3.93 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.87 5.77 -2.39 -0.01 1.86 16 27 H 0.09 2.69 8.14 -2.38 -0.02 2.68 16 28 H 0.02 0.91 6.42 -2.39 -0.02 0.89 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 2.07 6.82 -2.38 -0.02 2.05 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 2.40 4.01 -2.39 -0.01 2.39 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -65.82 268.04 2.55 -63.26 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 1.03 Total: 18.58 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 3.88 Total: -31.06 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -3.90 Total: -80.63 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.49 Total: -17.31 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.82 2.55 -63.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.745 kcal (2) G-P(sol) polarization free energy of solvation -65.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds