Wall clock time and date at job start Mon Mar 30 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 N 1.46895 * 109.47228 * 119.99958 * 2 1 3 5 5 C 1.47447 * 110.99921 * 59.15592 * 4 2 1 6 6 C 1.54326 * 107.23119 * 123.25887 * 5 4 2 7 7 C 1.55144 * 103.01770 * 22.28560 * 6 5 4 8 8 C 1.47846 * 111.00328 * 180.02562 * 4 2 1 9 9 H 1.08999 * 110.37000 * 332.57413 * 8 4 2 10 10 C 1.53003 * 110.37401 * 94.80394 * 8 4 2 11 11 O 1.42900 * 109.46786 * 65.00647 * 10 8 4 12 12 C 1.34924 * 116.99778 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99986 * 359.97438 * 12 11 10 14 14 C 1.38633 * 120.00265 * 179.97438 * 12 11 10 15 15 N 1.31588 * 119.99667 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00461 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47485 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.46497 * 299.99635 * 16 14 12 19 19 H 1.48500 * 109.47264 * 59.99454 * 16 14 12 20 20 H 1.08993 * 109.46868 * 300.00146 * 1 2 3 21 21 H 1.08998 * 109.47020 * 60.00227 * 1 2 3 22 22 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47427 * 239.99989 * 2 1 3 24 24 H 1.08990 * 109.47033 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46910 * 300.00240 * 3 2 1 26 26 H 1.09002 * 109.46914 * 59.99675 * 3 2 1 27 27 H 1.09004 * 109.88840 * 242.66306 * 5 4 2 28 28 H 1.08997 * 109.88732 * 3.69215 * 5 4 2 29 29 H 1.09002 * 110.70038 * 140.66503 * 6 5 4 30 30 H 1.08997 * 110.70198 * 263.72360 * 6 5 4 31 31 H 1.09004 * 110.98532 * 206.25271 * 7 6 5 32 32 H 1.08993 * 110.99341 * 82.44049 * 7 6 5 33 33 H 1.09002 * 109.47255 * 305.00123 * 10 8 4 34 34 H 1.08999 * 109.46752 * 184.99888 * 10 8 4 35 35 H 0.97001 * 119.99805 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5304 -2.0827 1.2436 6 6 2.7681 -3.0002 1.3336 7 6 3.8598 -2.0591 1.9075 8 6 3.4976 -0.7117 1.2339 9 1 3.9013 -0.6707 0.2223 10 6 4.0263 0.4590 2.0651 11 8 3.6244 0.2962 3.4268 12 6 4.0127 1.2502 4.2983 13 1 4.6009 2.0884 3.9547 14 6 3.6568 1.1546 5.6347 15 7 2.9398 0.1336 6.0532 16 14 4.1938 2.4757 6.8412 17 1 3.6881 2.1429 8.1972 18 1 5.6768 2.5471 6.8692 19 1 3.6429 3.7876 6.4163 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 0.8984 -2.2256 2.1201 28 1 0.9653 -2.3059 0.3387 29 1 2.5818 -3.8330 2.0117 30 1 3.0500 -3.3648 0.3458 31 1 4.8553 -2.3892 1.6103 32 1 3.7819 -1.9865 2.9922 33 1 3.6213 1.3932 1.6759 34 1 5.1145 0.4830 2.0079 35 1 2.6600 -0.5519 5.4264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260353199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:27 Heat of formation + Delta-G solvation = -37.761566 kcal Electronic energy + Delta-G solvation = -15225.412269 eV Core-core repulsion = 12837.743217 eV Total energy + Delta-G solvation = -2387.669052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.20393 -35.90633 -34.06539 -31.69828 -29.82427 -28.79606 -26.64736 -24.71833 -23.46404 -21.23667 -20.11707 -19.30185 -17.78642 -15.95395 -15.51000 -14.54530 -14.38634 -13.95018 -13.59208 -13.28535 -13.00118 -12.88788 -12.67216 -11.99587 -11.82968 -11.53598 -11.03195 -10.87398 -10.79261 -10.64259 -10.50313 -10.49887 -10.18752 -10.02659 -9.81525 -9.25396 -8.96088 -7.76890 -7.75178 -6.12542 -3.40917 3.47538 3.52773 3.70221 4.25496 4.56236 4.97364 5.05190 5.19154 5.30645 5.34940 5.52762 5.56728 5.60494 5.73473 5.82519 5.85161 5.95140 6.00907 6.09227 6.10309 6.16786 6.29853 6.38393 6.44926 6.55318 6.59039 6.60922 6.78651 6.97896 7.49747 7.64402 7.84370 9.02726 9.63492 10.32075 11.36334 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034150 B = 0.009060 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.707670 B = 3089.884557 C = 3383.800033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 C -0.148 4.148 4 N -0.504 5.504 5 C 0.047 3.953 6 C -0.142 4.142 7 C -0.120 4.120 8 C 0.079 3.921 9 H 0.050 0.950 10 C 0.090 3.910 11 O -0.300 6.300 12 C -0.443 4.443 13 H 0.046 0.954 14 C -0.009 4.009 15 N -0.917 5.917 16 Si 1.087 2.913 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 H 0.066 0.934 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.030 0.970 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.017 0.983 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -2.513 -12.413 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.205 4.205 4 N -0.229 5.229 5 C -0.081 4.081 6 C -0.180 4.180 7 C -0.158 4.158 8 C -0.029 4.029 9 H 0.068 0.932 10 C 0.012 3.988 11 O -0.215 6.215 12 C -0.522 4.522 13 H 0.064 0.936 14 C -0.209 4.209 15 N -0.556 5.556 16 Si 0.916 3.084 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.979 -1.914 -10.348 10.707 hybrid contribution 0.588 -0.612 -2.625 2.759 sum -1.390 -2.527 -12.973 13.289 Atomic orbital electron populations 1.21889 0.94668 1.01632 1.01973 1.21746 0.95532 0.95423 0.90777 1.22016 1.01266 0.95433 1.01806 1.63526 1.08125 1.14246 1.37019 1.22777 0.96893 0.87565 1.00868 1.22771 0.96396 0.98596 1.00276 1.22656 0.96983 0.92882 1.03229 1.22607 0.87366 0.96430 0.96451 0.93249 1.22107 0.95021 0.95132 0.86528 1.85373 1.75788 1.47166 1.13219 1.21656 1.35694 1.03460 0.91413 0.93616 1.25904 0.97687 1.02458 0.94833 1.70541 1.35321 1.11369 1.38414 0.83214 0.75485 0.73818 0.75926 1.20477 1.21815 1.21782 0.91508 0.92790 0.92869 0.95241 0.92326 0.93058 0.91182 0.90635 0.93381 0.91089 0.92474 0.91918 0.88470 0.94856 0.96515 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.05 37.16 0.34 -1.63 16 2 C 0.07 1.14 2.27 -67.71 -0.15 0.99 16 3 C -0.15 -2.28 7.93 37.16 0.29 -1.99 16 4 N -0.50 -9.32 4.67 -215.44 -1.01 -10.33 16 5 C 0.05 0.76 6.15 -2.83 -0.02 0.74 16 6 C -0.14 -2.15 6.94 -24.90 -0.17 -2.33 16 7 C -0.12 -2.19 6.43 -24.58 -0.16 -2.34 16 8 C 0.08 1.51 2.24 -66.17 -0.15 1.36 16 9 H 0.05 0.83 7.60 -51.93 -0.39 0.44 16 10 C 0.09 2.07 5.54 37.16 0.21 2.28 16 11 O -0.30 -8.64 7.92 -16.49 -0.13 -8.77 16 12 C -0.44 -13.52 9.89 30.88 0.31 -13.21 16 13 H 0.05 1.35 7.77 -52.48 -0.41 0.95 16 14 C -0.01 -0.27 5.49 -17.51 -0.10 -0.37 16 15 N -0.92 -29.88 13.70 55.48 0.76 -29.12 16 16 Si 1.09 26.45 29.92 -169.99 -5.09 21.36 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.68 6.45 -51.93 -0.33 0.34 16 23 H 0.03 0.43 8.09 -51.93 -0.42 0.01 16 24 H 0.06 0.93 5.67 -51.93 -0.29 0.63 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.05 0.67 6.28 -51.93 -0.33 0.34 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 2.18 7.05 -51.93 -0.37 1.81 16 33 H 0.03 0.76 5.24 -51.93 -0.27 0.49 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.28 9.22 7.97 -40.82 -0.33 8.90 16 LS Contribution 274.71 15.07 4.14 4.14 Total: -1.00 -33.40 274.71 -6.66 -40.06 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.73 Total: -0.83 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 0.40 Total: -16.52 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.25 Total: -39.45 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.13 Total: -8.77 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -5.09 Total: 21.36 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.40 -6.66 -40.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.301 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds